Wall clock time and date at job start Mon Mar 30 2020 02:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46863 * 2 1 4 4 H 1.09001 * 109.47016 * 305.44390 * 3 2 1 5 5 C 1.53003 * 109.46933 * 185.44997 * 3 2 1 6 6 C 1.50697 * 109.47305 * 64.99645 * 5 3 2 7 7 H 1.08003 * 120.00013 * 359.73019 * 6 5 3 8 8 C 1.37878 * 120.00060 * 179.97438 * 6 5 3 9 9 N 1.31507 * 120.00064 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99895 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47022 * 89.99263 * 10 8 6 12 12 H 1.48500 * 109.47125 * 209.99346 * 10 8 6 13 13 H 1.48505 * 109.47211 * 329.99767 * 10 8 6 14 14 C 1.52993 * 109.47152 * 65.44819 * 3 2 1 15 15 H 1.09004 * 108.96555 * 306.98718 * 14 3 2 16 16 C 1.54206 * 108.97946 * 188.26926 * 14 3 2 17 17 C 1.50616 * 109.06870 * 161.82497 * 16 14 3 18 18 C 1.53823 * 112.46913 * 90.32818 * 17 16 14 19 19 O 1.43990 * 113.40682 * 317.88674 * 18 17 16 20 20 C 1.40318 * 116.58667 * 317.89238 * 19 18 17 21 21 C 1.46286 * 108.97874 * 65.79157 * 14 3 2 22 22 H 1.09003 * 109.46625 * 174.04298 * 1 2 3 23 23 H 1.08996 * 109.47416 * 294.04249 * 1 2 3 24 24 H 1.09004 * 109.46979 * 54.04853 * 1 2 3 25 25 H 1.08997 * 109.47588 * 239.99914 * 2 1 3 26 26 H 1.09001 * 109.47431 * 119.99729 * 2 1 3 27 27 H 1.09004 * 109.46797 * 304.99669 * 5 3 2 28 28 H 1.09002 * 109.46854 * 185.00006 * 5 3 2 29 29 H 0.97002 * 120.00137 * 180.02562 * 9 8 6 30 30 H 1.08998 * 109.53820 * 281.70136 * 16 14 3 31 31 H 1.09001 * 109.53705 * 41.94705 * 16 14 3 32 32 H 1.09010 * 108.88131 * 329.55956 * 17 16 14 33 33 H 1.08995 * 108.88693 * 211.10225 * 17 16 14 34 34 H 1.09001 * 108.69447 * 196.87303 * 18 17 16 35 35 H 1.08999 * 108.69666 * 78.90150 * 18 17 16 36 36 H 1.08996 * 109.59842 * 335.27325 * 20 19 18 37 37 H 1.09003 * 109.72583 * 214.88654 * 20 19 18 38 38 H 1.09004 * 108.93441 * 302.75919 * 21 14 3 39 39 H 1.09002 * 108.93710 * 61.36246 * 21 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5992 1.9838 -0.8372 5 6 3.5638 1.4448 -0.1370 6 6 3.9480 0.8860 -1.4828 7 1 3.1821 0.5577 -2.1698 8 6 5.2776 0.7893 -1.8350 9 7 5.6129 0.3012 -3.0093 10 14 6.6026 1.3501 -0.6437 11 1 7.0052 0.2117 0.2206 12 1 7.7814 1.8337 -1.4064 13 1 6.0744 2.4508 0.2018 14 6 1.6449 2.1232 1.3120 15 1 0.5713 2.0077 1.4617 16 6 1.9774 3.6260 1.2174 17 6 1.2086 4.3678 2.2791 18 6 1.9904 4.4829 3.5988 19 8 2.6739 3.2701 3.9664 20 6 1.9677 2.0713 3.7842 21 6 2.3517 1.4743 2.4162 22 1 -0.3633 -1.0222 -0.1067 23 1 -0.3634 0.4187 0.9385 24 1 -0.3633 0.6034 -0.8319 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 4.0002 0.8295 0.6499 28 1 3.9351 2.4657 -0.0480 29 1 6.5482 0.2328 -3.2569 30 1 3.0463 3.7732 1.3715 31 1 1.6946 4.0007 0.2337 32 1 0.2722 3.8428 2.4684 33 1 0.9815 5.3698 1.9151 34 1 1.2945 4.7469 4.3952 35 1 2.7250 5.2822 3.5012 36 1 0.8964 2.2708 3.8084 37 1 2.2265 1.3680 4.5758 38 1 2.1110 0.4112 2.4141 39 1 3.4250 1.5926 2.2674 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260641675.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:53 Heat of formation + Delta-G solvation = -96.797891 kcal Electronic energy + Delta-G solvation = -16910.316635 eV Core-core repulsion = 14429.975867 eV Total energy + Delta-G solvation = -2480.340767 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.86815 -38.22309 -34.96138 -34.20858 -32.82941 -31.43287 -28.29131 -26.98173 -25.28654 -23.56060 -22.66482 -21.34170 -19.60731 -19.02797 -17.42009 -17.14870 -16.50455 -15.92271 -15.72563 -15.07093 -14.77127 -14.56309 -14.41358 -14.22359 -13.93542 -13.52123 -13.04452 -12.93491 -12.84255 -12.40827 -12.37152 -12.15287 -11.84388 -11.73723 -11.59081 -11.51294 -11.21909 -10.95562 -10.74249 -10.73152 -10.67322 -10.24063 -8.27628 -6.28018 1.31861 1.33551 1.45991 2.35160 3.02376 3.08037 3.76549 3.90725 3.96552 4.09303 4.21067 4.33084 4.43417 4.43915 4.56010 4.63698 4.68864 4.74020 4.85866 4.90553 4.95440 5.04041 5.12831 5.17191 5.18403 5.23225 5.32582 5.34694 5.38314 5.44322 5.53109 5.60900 5.71068 5.79472 5.85124 6.35444 6.57225 6.79910 7.35273 8.89283 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024286 B = 0.009391 C = 0.007729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.659105 B = 2980.809906 C = 3621.645542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.065 4.065 4 H 0.045 0.955 5 C -0.001 4.001 6 C -0.516 4.516 7 H 0.034 0.966 8 C 0.004 3.996 9 N -0.953 5.953 10 Si 0.941 3.059 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.253 1.253 14 C -0.072 4.072 15 H 0.083 0.917 16 C -0.114 4.114 17 C -0.146 4.146 18 C 0.059 3.941 19 O -0.410 6.410 20 C 0.072 3.928 21 C -0.150 4.150 22 H 0.056 0.944 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.034 0.966 26 H 0.060 0.940 27 H 0.013 0.987 28 H 0.010 0.990 29 H 0.264 0.736 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.143 6.414 15.055 19.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C -0.084 4.084 4 H 0.063 0.937 5 C -0.038 4.038 6 C -0.554 4.554 7 H 0.053 0.947 8 C -0.192 4.192 9 N -0.595 5.595 10 Si 0.765 3.235 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.176 1.176 14 C -0.090 4.090 15 H 0.101 0.899 16 C -0.151 4.151 17 C -0.183 4.183 18 C -0.017 4.017 19 O -0.330 6.330 20 C -0.005 4.005 21 C -0.188 4.188 22 H 0.075 0.925 23 H 0.089 0.911 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.031 0.969 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.833 6.387 15.022 19.590 hybrid contribution 0.915 -0.112 -0.611 1.106 sum -9.918 6.275 14.411 18.585 Atomic orbital electron populations 1.21763 0.94543 1.01539 1.01985 1.21513 0.96328 0.96505 1.00855 1.21079 0.95193 0.95714 0.96420 0.93653 1.19577 0.94708 0.95393 0.94110 1.21551 0.92178 1.40045 1.01601 0.94727 1.25923 1.01343 0.95230 0.96740 1.70064 1.18081 1.48524 1.22844 0.85789 0.78503 0.79821 0.79348 1.19392 1.21036 1.17649 1.20219 1.00345 0.94350 0.94088 0.89877 1.21349 0.99946 0.95056 0.98781 1.21896 0.99401 1.02136 0.94904 1.23074 0.96925 0.86050 0.95637 1.87417 1.45226 1.14890 1.85420 1.22388 0.96597 0.85760 0.95749 1.21317 1.00847 1.00837 0.95782 0.92500 0.91093 0.93483 0.94728 0.92106 0.96881 0.97189 0.92761 0.93710 0.92329 0.90590 0.89446 0.91356 0.89752 0.91321 0.89054 0.90651 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.53 71.98 0.69 -3.21 16 2 C -0.11 -4.16 5.14 30.60 0.16 -4.00 16 3 C -0.07 -2.53 1.51 -10.79 -0.02 -2.54 16 4 H 0.04 1.86 7.96 -2.39 -0.02 1.84 16 5 C 0.00 -0.03 2.67 29.85 0.08 0.05 16 6 C -0.52 -30.33 8.89 25.60 0.23 -30.10 16 7 H 0.03 2.23 7.32 -2.91 -0.02 2.21 16 8 C 0.00 0.22 5.47 84.66 0.46 0.68 16 9 N -0.95 -61.43 13.96 21.45 0.30 -61.14 16 10 Si 0.94 46.56 27.47 68.60 1.88 48.45 16 11 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 13 H -0.25 -11.92 6.54 99.48 0.65 -11.27 16 14 C -0.07 -2.14 1.46 -12.46 -0.02 -2.16 16 15 H 0.08 2.08 5.82 -2.39 -0.01 2.07 16 16 C -0.11 -3.30 4.34 30.23 0.13 -3.17 16 17 C -0.15 -3.03 5.32 30.10 0.16 -2.87 16 18 C 0.06 1.24 6.67 72.26 0.48 1.72 16 19 O -0.41 -11.14 10.17 -143.43 -1.46 -12.59 16 20 C 0.07 1.69 6.38 72.36 0.46 2.15 16 21 C -0.15 -4.41 4.11 28.91 0.12 -4.29 16 22 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.07 1.61 6.71 -2.39 -0.02 1.60 16 24 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.03 1.51 6.80 -2.39 -0.02 1.50 16 26 H 0.06 2.09 6.23 -2.39 -0.01 2.07 16 27 H 0.01 0.62 6.09 -2.39 -0.01 0.61 16 28 H 0.01 0.48 5.95 -2.39 -0.01 0.47 16 29 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 30 H 0.04 1.52 7.13 -2.39 -0.02 1.50 16 31 H 0.06 1.75 7.89 -2.39 -0.02 1.73 16 32 H 0.08 1.37 6.83 -2.38 -0.02 1.36 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.07 1.31 6.98 -2.39 -0.02 1.29 16 37 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.08 2.11 6.13 -2.38 -0.01 2.10 16 39 H 0.05 1.68 6.30 -2.39 -0.02 1.66 16 Total: -1.00 -68.08 285.15 4.61 -63.47 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.95 Total: 9.56 kcal Atomic # 6 Polarization: -50.68 SS G_CDS: 2.93 Total: -47.74 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.30 Total: -61.14 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -1.46 Total: -12.59 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.88 Total: 48.45 kcal Total: -68.08 4.61 -63.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260641675.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.328 kcal (2) G-P(sol) polarization free energy of solvation -68.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds