Wall clock time and date at job start Mon Mar 30 2020 02:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99791 * 2 1 4 4 C 1.53002 * 109.46825 * 180.02562 * 3 2 1 5 5 C 1.50693 * 109.47406 * 59.99870 * 3 2 1 6 6 H 1.08001 * 120.00258 * 240.00381 * 5 3 2 7 7 C 1.37881 * 120.00094 * 59.99672 * 5 3 2 8 8 N 1.31517 * 120.00068 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99967 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47339 * 60.00421 * 9 7 5 11 11 H 1.48500 * 109.47140 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47320 * 299.99847 * 9 7 5 13 13 C 1.53004 * 109.47124 * 299.99719 * 3 2 1 14 14 C 1.45543 * 108.81860 * 178.56132 * 13 3 2 15 15 C 1.54241 * 112.40629 * 182.63926 * 14 13 3 16 16 C 1.50478 * 108.51773 * 280.01298 * 15 14 13 17 17 C 1.54065 * 112.49971 * 94.15337 * 16 15 14 18 18 C 1.54072 * 112.81614 * 318.28140 * 17 16 15 19 19 C 1.50472 * 112.49352 * 318.28475 * 18 17 16 20 20 H 1.09004 * 109.47120 * 60.00076 * 1 2 3 21 21 H 1.09003 * 109.46917 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47122 * 300.00209 * 1 2 3 23 23 H 1.09003 * 109.46867 * 179.97438 * 4 3 2 24 24 H 1.09002 * 109.46609 * 299.99480 * 4 3 2 25 25 H 1.08992 * 109.47416 * 59.99903 * 4 3 2 26 26 H 0.96993 * 120.00422 * 179.97438 * 8 7 5 27 27 H 1.09002 * 108.87332 * 60.00206 * 13 3 2 28 28 H 1.08996 * 108.89556 * 303.39367 * 14 13 3 29 29 H 1.09003 * 108.89364 * 61.87983 * 14 13 3 30 30 H 1.08993 * 109.63127 * 160.30234 * 15 14 13 31 31 H 1.09003 * 109.62441 * 39.71846 * 15 14 13 32 32 H 1.09000 * 108.87985 * 333.37364 * 16 15 14 33 33 H 1.09002 * 108.79446 * 214.87269 * 16 15 14 34 34 H 1.08997 * 108.81773 * 197.41952 * 17 16 15 35 35 H 1.09000 * 108.72938 * 79.08069 * 17 16 15 36 36 H 1.09001 * 108.87401 * 197.51020 * 18 17 16 37 37 H 1.08995 * 108.87587 * 79.06131 * 18 17 16 38 38 H 1.09005 * 109.63053 * 334.43756 * 19 18 17 39 39 H 1.09003 * 109.62465 * 213.86321 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 1.5656 2.0533 1.2304 6 1 1.0159 2.9777 1.1313 7 6 1.8604 1.5575 2.4827 8 7 2.5301 0.4321 2.6035 9 14 1.3085 2.4842 4.0078 10 1 -0.1719 2.6008 4.0076 11 1 1.7473 1.7477 5.2204 12 1 1.9120 3.8410 4.0081 13 6 1.5588 2.0647 -1.2493 14 6 2.1307 3.4027 -1.2178 15 6 1.6741 4.2655 -2.4120 16 6 2.4971 3.8907 -3.6147 17 6 1.8105 2.8251 -4.4902 18 6 1.1417 1.7115 -3.6616 19 6 1.9896 1.2706 -2.4994 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 3.9788 2.1804 -0.0011 24 1 3.8574 0.6436 0.8892 25 1 3.8568 0.6439 -0.8908 26 1 2.7378 0.0834 3.4844 27 1 0.4718 2.1451 -1.2395 28 1 1.8297 3.8935 -0.2923 29 1 3.2176 3.3225 -1.2353 30 1 1.8235 5.3200 -2.1802 31 1 0.6200 4.0785 -2.6170 32 1 3.4587 3.5038 -3.2774 33 1 2.6680 4.7840 -4.2155 34 1 2.5558 2.3756 -5.1463 35 1 1.0514 3.3115 -5.1028 36 1 0.9562 0.8539 -4.3083 37 1 0.1877 2.0783 -3.2830 38 1 3.0393 1.4693 -2.7157 39 1 1.8445 0.2046 -2.3240 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260654766.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:56 Heat of formation + Delta-G solvation = -67.531412 kcal Electronic energy + Delta-G solvation = -17474.175308 eV Core-core repulsion = 14995.103630 eV Total energy + Delta-G solvation = -2479.071678 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.14281 -36.22609 -32.86878 -31.94238 -31.47159 -28.52027 -25.72589 -24.68439 -23.96560 -23.89865 -20.97730 -18.96392 -18.26159 -16.37542 -15.51874 -14.75436 -14.52430 -14.20468 -13.72306 -13.44398 -13.29648 -12.80749 -12.46004 -12.13255 -11.85558 -11.68033 -11.26719 -11.05251 -10.92877 -10.69728 -10.45498 -10.32724 -10.23340 -10.16424 -10.01750 -9.87200 -9.59368 -9.54882 -9.19530 -8.50704 -8.42167 -7.65011 -5.89965 -4.08296 3.30653 3.36311 3.38459 4.42687 5.08836 5.19215 5.26024 5.27123 5.63532 5.68168 5.77331 5.77797 5.93743 6.07562 6.08276 6.10682 6.26942 6.49563 6.53048 6.57459 6.61407 6.67552 6.70360 6.76425 6.89799 6.93378 7.01951 7.06851 7.10170 7.21263 7.27492 7.40503 7.62192 7.83761 8.16272 8.37602 8.88012 9.18279 9.64139 11.09061 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.034692 B = 0.009533 C = 0.008600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.900121 B = 2936.393379 C = 3255.169986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.376 6.376 3 C 0.240 3.760 4 C -0.125 4.125 5 C -0.549 4.549 6 H 0.055 0.945 7 C 0.081 3.919 8 N -0.857 5.857 9 Si 0.881 3.119 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 C -0.101 4.101 14 C -0.105 4.105 15 C -0.120 4.120 16 C -0.115 4.115 17 C -0.112 4.112 18 C -0.115 4.115 19 C -0.109 4.109 20 H 0.013 0.987 21 H 0.047 0.953 22 H 0.040 0.960 23 H 0.040 0.960 24 H 0.085 0.915 25 H 0.016 0.984 26 H 0.258 0.742 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.278 3.859 -9.401 10.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.295 6.295 3 C 0.202 3.798 4 C -0.182 4.182 5 C -0.587 4.587 6 H 0.073 0.927 7 C -0.124 4.124 8 N -0.494 5.494 9 Si 0.708 3.292 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.120 4.120 14 C -0.142 4.142 15 C -0.157 4.157 16 C -0.153 4.153 17 C -0.150 4.150 18 C -0.153 4.153 19 C -0.147 4.147 20 H 0.031 0.969 21 H 0.065 0.935 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.104 0.896 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.071 3.552 -9.269 9.984 hybrid contribution -0.591 0.773 0.910 1.333 sum -1.662 4.325 -8.359 9.557 Atomic orbital electron populations 1.22165 0.85096 0.98504 0.98704 1.87847 1.16505 1.30754 1.94376 1.19044 0.90684 0.80382 0.89706 1.21677 0.96024 0.99466 1.01018 1.21485 1.37525 1.08658 0.91016 0.92656 1.24973 0.94354 0.94447 0.98652 1.69980 1.37604 1.18821 1.22966 0.86864 0.79159 0.80144 0.82987 1.20361 1.21310 1.20265 1.20573 0.99610 0.95450 0.96351 1.20538 1.00536 0.95672 0.97464 1.21391 0.99713 0.98877 0.95726 1.21332 0.99722 0.97471 0.96752 1.21885 0.99127 0.96319 0.97682 1.21360 0.99523 0.97010 0.97411 1.21342 0.98848 1.00454 0.94039 0.96860 0.93463 0.94193 0.94103 0.89633 0.96524 0.93147 0.92843 0.91043 0.92497 0.92989 0.92410 0.92098 0.93461 0.93001 0.93234 0.93402 0.92630 0.92579 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.18 10.30 101.05 1.04 2.22 16 2 O -0.38 -9.60 8.72 -35.23 -0.31 -9.90 16 3 C 0.24 5.79 0.17 -91.77 -0.02 5.77 16 4 C -0.12 -3.00 7.98 37.16 0.30 -2.70 16 5 C -0.55 -14.44 5.94 -34.44 -0.20 -14.64 16 6 H 0.06 1.45 6.52 -52.49 -0.34 1.11 16 7 C 0.08 2.19 5.24 -17.82 -0.09 2.10 16 8 N -0.86 -24.26 10.87 55.43 0.60 -23.65 16 9 Si 0.88 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C -0.10 -2.05 0.72 -93.49 -0.07 -2.11 16 14 C -0.10 -1.97 4.05 -29.60 -0.12 -2.09 16 15 C -0.12 -1.85 5.61 -27.34 -0.15 -2.00 16 16 C -0.12 -1.61 5.31 -27.43 -0.15 -1.76 16 17 C -0.11 -1.51 5.85 -25.62 -0.15 -1.66 16 18 C -0.12 -1.76 5.31 -27.43 -0.15 -1.91 16 19 C -0.11 -1.98 3.97 -27.35 -0.11 -2.09 16 20 H 0.01 0.27 6.41 -51.93 -0.33 -0.06 16 21 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.04 0.96 7.15 -51.93 -0.37 0.59 16 23 H 0.04 0.93 6.45 -51.93 -0.33 0.59 16 24 H 0.08 2.31 6.07 -51.93 -0.32 1.99 16 25 H 0.02 0.36 6.93 -51.93 -0.36 0.00 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.05 1.13 5.83 -51.93 -0.30 0.82 16 28 H 0.07 1.48 6.12 -51.93 -0.32 1.16 16 29 H 0.06 1.08 5.64 -51.93 -0.29 0.79 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.89 6.98 -51.93 -0.36 0.53 16 32 H 0.06 0.89 6.63 -51.93 -0.34 0.55 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.87 6.63 -51.93 -0.34 0.53 16 38 H 0.06 1.01 6.46 -51.93 -0.34 0.67 16 39 H 0.07 1.31 7.14 -51.93 -0.37 0.94 16 LS Contribution 279.03 15.07 4.20 4.20 Total: -1.00 -27.67 279.03 -6.79 -34.46 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.40 Total: -0.16 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 0.13 Total: -20.87 kcal Atomic # 7 Polarization: -24.26 SS G_CDS: 0.60 Total: -23.65 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.31 Total: -9.90 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.67 -6.79 -34.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260654766.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.072 kcal (2) G-P(sol) polarization free energy of solvation -27.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds