Wall clock time and date at job start Mon Mar 30 2020 02:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47294 * 2 1 4 4 H 1.07999 * 120.00320 * 119.99505 * 3 2 1 5 5 C 1.37880 * 119.99495 * 299.99647 * 3 2 1 6 6 N 1.31513 * 120.00316 * 0.02562 * 5 3 2 7 7 Si 1.86803 * 119.99903 * 180.02562 * 5 3 2 8 8 H 1.48506 * 109.46861 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47218 * 119.99798 * 7 5 3 10 10 H 1.48498 * 109.47221 * 240.00130 * 7 5 3 11 11 C 1.52993 * 109.47465 * 239.99679 * 2 1 3 12 12 O 1.42905 * 109.47462 * 185.19776 * 11 2 1 13 13 C 1.53001 * 109.47145 * 119.99355 * 2 1 3 14 14 C 1.54242 * 108.89293 * 59.94399 * 13 2 1 15 15 C 1.50475 * 108.52526 * 159.26424 * 14 13 2 16 16 C 1.54070 * 112.50055 * 94.15376 * 15 14 13 17 17 C 1.54074 * 112.81180 * 318.28417 * 16 15 14 18 18 C 1.50469 * 112.49666 * 318.28374 * 17 16 15 19 19 C 1.45539 * 108.89794 * 297.06529 * 13 2 1 20 20 H 1.09000 * 109.47259 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46936 * 300.00635 * 1 2 3 22 22 H 1.09000 * 109.47203 * 60.00250 * 1 2 3 23 23 H 0.96998 * 120.00159 * 180.02562 * 6 5 3 24 24 H 1.09002 * 109.47342 * 65.19056 * 11 2 1 25 25 H 1.09002 * 109.46865 * 305.19700 * 11 2 1 26 26 H 0.96699 * 113.99679 * 180.02562 * 12 11 2 27 27 H 1.09002 * 108.87740 * 178.45380 * 13 2 1 28 28 H 1.09003 * 109.63267 * 278.97620 * 14 13 2 29 29 H 1.08996 * 109.63049 * 39.55426 * 14 13 2 30 30 H 1.08995 * 108.87772 * 333.37459 * 15 14 13 31 31 H 1.09003 * 108.87696 * 214.92831 * 15 14 13 32 32 H 1.08997 * 108.81816 * 197.42594 * 16 15 14 33 33 H 1.09004 * 108.73012 * 79.08107 * 16 15 14 34 34 H 1.09002 * 108.87251 * 197.51197 * 17 16 15 35 35 H 1.08999 * 108.79939 * 79.00661 * 17 16 15 36 36 H 1.09006 * 109.62631 * 334.44655 * 18 17 16 37 37 H 1.09004 * 109.63171 * 213.86934 * 18 17 16 38 38 H 1.09005 * 108.89377 * 303.43711 * 19 13 2 39 39 H 1.09001 * 108.89937 * 62.02530 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 1 2.6532 1.7741 0.8100 5 6 1.6993 2.2697 -1.0342 6 7 0.9428 1.8397 -2.0203 7 14 2.3225 4.0307 -1.0347 8 1 3.1474 4.2641 0.1780 9 1 3.1474 4.2636 -2.2474 10 1 1.1679 4.9645 -1.0345 11 6 2.0400 -0.7213 -1.2491 12 8 3.4639 -0.8279 -1.1897 13 6 2.0400 -0.7211 1.2493 14 6 1.5174 -2.1722 1.2367 15 6 2.3925 -3.0034 2.1354 16 6 1.8303 -3.1164 3.5655 17 6 1.2645 -1.7835 4.0920 18 6 2.1344 -0.6083 3.7367 19 6 1.6064 0.0143 2.4281 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7088 2.4368 -2.7480 24 1 1.7546 -0.1566 -2.1368 25 1 1.6027 -1.7186 -1.2968 26 1 3.8569 -1.2753 -1.9515 27 1 3.1296 -0.7396 1.2257 28 1 0.4907 -2.1950 1.6023 29 1 1.5561 -2.5666 0.2213 30 1 3.3828 -2.5503 2.1806 31 1 2.4834 -4.0038 1.7122 32 1 2.6272 -3.4474 4.2314 33 1 1.0356 -3.8624 3.5712 34 1 1.1764 -1.8419 5.1768 35 1 0.2731 -1.6300 3.6657 36 1 3.1619 -0.9432 3.5944 37 1 2.0949 0.1315 4.5363 38 1 1.9656 1.0409 2.3555 39 1 0.5168 0.0233 2.4576 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260729873.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:05 Heat of formation + Delta-G solvation = -74.678101 kcal Electronic energy + Delta-G solvation = -17390.993939 eV Core-core repulsion = 14911.612358 eV Total energy + Delta-G solvation = -2479.381581 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.05920 -35.99590 -33.90909 -31.90100 -31.53799 -28.91162 -25.47602 -24.83406 -23.87589 -23.38962 -20.34877 -18.91571 -17.92737 -16.01638 -15.81139 -15.43503 -14.52325 -14.11108 -13.80966 -13.49210 -13.20722 -12.46436 -12.40110 -12.01736 -11.87150 -11.61876 -11.23512 -10.95421 -10.87919 -10.64738 -10.41616 -10.36939 -10.18256 -10.11516 -9.88512 -9.80190 -9.56655 -9.08566 -8.85659 -8.50917 -8.39065 -8.10628 -5.87339 -3.93291 3.34118 3.42202 3.46894 4.50623 5.15660 5.26258 5.31034 5.38995 5.67725 5.73903 5.82355 5.86108 5.99295 6.11766 6.14729 6.16856 6.32482 6.53956 6.61432 6.62027 6.69926 6.73646 6.82372 6.86808 6.96590 7.00510 7.12541 7.22809 7.32575 7.40962 7.45186 7.62745 7.81635 8.00788 8.27014 8.56536 8.93280 9.04561 9.69564 11.13510 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.033391 B = 0.009537 C = 0.008549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.345315 B = 2935.140067 C = 3274.415538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.076 3.924 3 C -0.478 4.478 4 H 0.057 0.943 5 C 0.058 3.942 6 N -0.897 5.897 7 Si 0.888 3.112 8 H -0.275 1.275 9 H -0.287 1.287 10 H -0.287 1.287 11 C 0.082 3.918 12 O -0.566 6.566 13 C -0.065 4.065 14 C -0.113 4.113 15 C -0.115 4.115 16 C -0.112 4.112 17 C -0.115 4.115 18 C -0.121 4.121 19 C -0.106 4.106 20 H 0.010 0.990 21 H 0.034 0.966 22 H 0.080 0.920 23 H 0.256 0.744 24 H 0.075 0.925 25 H -0.002 1.002 26 H 0.347 0.653 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.554 -7.330 6.238 9.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.075 3.925 3 C -0.516 4.516 4 H 0.075 0.925 5 C -0.140 4.140 6 N -0.538 5.538 7 Si 0.717 3.283 8 H -0.199 1.199 9 H -0.213 1.213 10 H -0.214 1.214 11 C 0.005 3.995 12 O -0.368 6.368 13 C -0.083 4.083 14 C -0.150 4.150 15 C -0.152 4.152 16 C -0.150 4.150 17 C -0.152 4.152 18 C -0.158 4.158 19 C -0.144 4.144 20 H 0.029 0.971 21 H 0.053 0.947 22 H 0.099 0.901 23 H 0.066 0.934 24 H 0.093 0.907 25 H 0.016 0.984 26 H 0.189 0.811 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.366 -6.926 6.666 9.620 hybrid contribution 0.353 0.643 -0.672 0.995 sum 0.719 -6.283 5.994 8.713 Atomic orbital electron populations 1.21825 0.97738 0.97171 1.02409 1.18162 0.91747 0.93809 0.88743 1.21144 1.29390 0.94801 1.06263 0.92506 1.24894 0.95274 0.98215 0.95654 1.69771 1.37939 1.35160 1.10913 0.86596 0.78475 0.85406 0.77842 1.19943 1.21328 1.21379 1.22550 0.78556 0.95014 1.03366 1.86553 1.22582 1.81755 1.45904 1.19923 0.99965 0.92407 0.96000 1.21474 0.98422 0.96657 0.98481 1.21343 1.00154 0.99255 0.94465 1.21891 0.99519 0.96998 0.96608 1.21328 0.99987 0.94880 0.99009 1.21401 0.99498 0.96544 0.98373 1.20593 1.00317 1.00571 0.92881 0.97096 0.94728 0.90104 0.93374 0.90711 0.98369 0.81104 0.92151 0.92851 0.92280 0.92274 0.93657 0.93235 0.93161 0.93543 0.92194 0.92323 0.93141 0.91127 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 7.62 37.16 0.28 -2.85 16 2 C 0.08 1.80 0.13 -155.66 -0.02 1.78 16 3 C -0.48 -12.79 6.97 -34.44 -0.24 -13.03 16 4 H 0.06 1.56 6.42 -52.49 -0.34 1.22 16 5 C 0.06 1.59 5.13 -17.82 -0.09 1.50 16 6 N -0.90 -24.71 9.33 55.43 0.52 -24.19 16 7 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 8 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 C 0.08 1.94 5.33 37.15 0.20 2.14 16 12 O -0.57 -12.80 12.48 -35.23 -0.44 -13.24 16 13 C -0.06 -1.34 0.92 -93.49 -0.09 -1.43 16 14 C -0.11 -2.06 3.87 -27.34 -0.11 -2.16 16 15 C -0.11 -1.80 5.31 -27.43 -0.15 -1.95 16 16 C -0.11 -1.56 5.85 -25.61 -0.15 -1.71 16 17 C -0.11 -1.66 5.32 -27.43 -0.15 -1.80 16 18 C -0.12 -1.95 5.61 -27.35 -0.15 -2.10 16 19 C -0.11 -2.07 4.07 -29.60 -0.12 -2.19 16 20 H 0.01 0.22 6.89 -51.93 -0.36 -0.14 16 21 H 0.03 0.78 6.49 -51.93 -0.34 0.45 16 22 H 0.08 2.09 6.07 -51.93 -0.32 1.77 16 23 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 24 H 0.07 1.96 5.95 -51.93 -0.31 1.65 16 25 H 0.00 -0.04 6.27 -51.93 -0.33 -0.36 16 26 H 0.35 6.13 9.12 45.56 0.42 6.55 16 27 H 0.06 1.38 6.79 -51.93 -0.35 1.03 16 28 H 0.05 0.95 6.46 -51.93 -0.34 0.62 16 29 H 0.06 1.12 5.71 -51.93 -0.30 0.83 16 30 H 0.06 0.98 6.63 -51.93 -0.34 0.64 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.91 6.62 -51.93 -0.34 0.56 16 36 H 0.06 0.96 6.98 -51.93 -0.36 0.60 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.52 6.03 -51.93 -0.31 1.21 16 39 H 0.05 1.05 5.68 -51.93 -0.30 0.75 16 LS Contribution 275.95 15.07 4.16 4.16 Total: -1.00 -27.91 275.95 -7.02 -34.93 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.46 Total: 5.64 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -0.78 Total: -23.80 kcal Atomic # 7 Polarization: -24.71 SS G_CDS: 0.52 Total: -24.19 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.44 Total: -13.24 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.91 -7.02 -34.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260729873.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.749 kcal (2) G-P(sol) polarization free energy of solvation -27.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds