Wall clock time and date at job start Mon Mar 30 2020 03:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47054 * 2 1 4 4 C 1.53003 * 109.46540 * 119.99469 * 2 1 3 5 5 H 1.09001 * 109.45379 * 51.59537 * 4 2 1 6 6 N 1.46853 * 109.45871 * 171.56401 * 4 2 1 7 7 C 1.46906 * 110.99997 * 305.85497 * 6 4 2 8 8 C 1.46845 * 111.19388 * 181.76062 * 6 4 2 9 9 C 1.53032 * 109.52508 * 298.25466 * 8 6 4 10 10 C 1.53125 * 109.27947 * 59.18318 * 9 8 6 11 11 C 1.53038 * 109.46631 * 291.61405 * 4 2 1 12 12 N 1.46896 * 109.50402 * 300.78835 * 11 4 2 13 13 C 1.50707 * 109.49980 * 60.86465 * 11 4 2 14 14 H 1.08001 * 119.99682 * 5.38153 * 13 11 4 15 15 C 1.37873 * 119.99889 * 185.37592 * 13 11 4 16 16 N 1.31518 * 119.99896 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00016 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47023 * 89.99915 * 17 15 13 19 19 H 1.48494 * 109.46864 * 210.00053 * 17 15 13 20 20 H 1.48496 * 109.46711 * 330.00151 * 17 15 13 21 21 H 1.08993 * 109.47322 * 196.84208 * 1 2 3 22 22 H 1.08997 * 109.47507 * 316.84872 * 1 2 3 23 23 H 1.09010 * 109.46874 * 76.84386 * 1 2 3 24 24 H 1.08997 * 109.47237 * 239.99166 * 2 1 3 25 25 H 1.09009 * 109.47088 * 169.29860 * 3 2 1 26 26 H 1.09007 * 109.47108 * 289.29339 * 3 2 1 27 27 H 1.08994 * 109.47727 * 49.29706 * 3 2 1 28 28 H 1.09000 * 109.47031 * 66.81376 * 7 6 4 29 29 H 1.08992 * 109.46920 * 186.81486 * 7 6 4 30 30 H 1.09000 * 109.46681 * 306.81627 * 7 6 4 31 31 H 1.09000 * 109.46957 * 58.27340 * 8 6 4 32 32 H 1.09010 * 109.46087 * 178.24146 * 8 6 4 33 33 H 1.09001 * 109.50637 * 299.24068 * 9 8 6 34 34 H 1.09004 * 109.50669 * 179.12357 * 9 8 6 35 35 H 1.08995 * 109.52523 * 182.44486 * 10 9 8 36 36 H 1.08994 * 109.57291 * 62.28067 * 10 9 8 37 37 H 1.00895 * 110.99850 * 179.97438 * 12 11 4 38 38 H 1.00900 * 111.00473 * 303.95340 * 12 11 4 39 39 H 0.97000 * 119.99728 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.5588 -1.6962 1.3274 6 7 3.4943 -0.8995 1.1520 7 6 3.8591 -1.5758 -0.1001 8 6 4.0190 -1.6264 2.3150 9 6 3.7469 -0.8206 3.5872 10 6 2.2383 -0.6040 3.7355 11 6 1.7087 0.1117 2.4898 12 7 2.3405 1.4330 2.3765 13 6 0.2148 0.2762 2.6012 14 1 -0.4381 -0.2397 1.9127 15 6 -0.3184 1.0853 3.5820 16 7 0.4767 1.7139 4.4201 17 14 -2.1702 1.2887 3.7204 18 1 -2.7158 0.2489 4.6295 19 1 -2.4808 2.6348 4.2650 20 1 -2.7858 1.1441 2.3769 21 1 -0.3633 -0.9835 0.2977 22 1 -0.3634 0.7497 0.7028 23 1 -0.3633 0.2339 -1.0008 24 1 1.8933 -0.5139 -0.8899 25 1 3.1132 1.4484 0.1908 26 1 1.8409 1.8982 -0.9700 27 1 1.5293 2.0085 0.7790 28 1 3.6325 -0.9245 -0.9442 29 1 4.9249 -1.8035 -0.0927 30 1 3.2904 -2.5011 -0.1922 31 1 3.5287 -2.5972 2.3882 32 1 5.0933 -1.7702 2.1990 33 1 4.2484 0.1449 3.5207 34 1 4.1227 -1.3677 4.4519 35 1 2.0429 0.0065 4.6170 36 1 1.7398 -1.5674 3.8417 37 1 2.1359 2.0021 3.1841 38 1 3.3361 1.3470 2.2371 39 1 0.1015 2.2834 5.1099 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260803363.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:34 Heat of formation + Delta-G solvation = 30.007836 kcal Electronic energy + Delta-G solvation = -17977.488828 eV Core-core repulsion = 15534.939520 eV Total energy + Delta-G solvation = -2442.549307 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.27395 -34.63624 -33.96133 -31.58423 -29.74433 -27.67085 -26.13260 -25.85444 -24.68394 -22.08929 -21.11491 -19.27361 -17.67128 -16.40839 -15.14281 -14.67672 -14.48349 -14.01310 -13.86387 -13.10030 -12.95655 -12.42785 -12.19477 -12.16380 -11.76663 -11.48233 -11.36964 -11.14357 -10.94990 -10.77193 -10.52965 -10.36488 -10.09831 -9.91849 -9.78083 -9.63123 -9.37609 -8.77513 -8.60991 -8.34900 -7.56835 -6.35743 -5.98058 -3.98349 3.31021 3.39150 3.41937 4.42076 4.65261 5.28277 5.57984 5.67063 5.74223 5.88174 6.01265 6.02600 6.10131 6.24990 6.26731 6.34690 6.51737 6.59477 6.64936 6.70490 6.75329 6.78772 6.88959 7.17931 7.21311 7.26609 7.37150 7.42933 7.63089 7.78343 7.79726 7.86725 8.02357 8.20929 8.43910 8.83088 9.29043 9.49608 9.68753 11.07947 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029762 B = 0.012643 C = 0.010385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.583565 B = 2214.217762 C = 2695.635462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.064 4.064 3 C -0.129 4.129 4 C 0.105 3.895 5 H 0.020 0.980 6 N -0.534 5.534 7 C 0.026 3.974 8 C 0.061 3.939 9 C -0.120 4.120 10 C -0.142 4.142 11 C 0.259 3.741 12 N -0.823 5.823 13 C -0.504 4.504 14 H 0.081 0.919 15 C 0.070 3.930 16 N -0.896 5.896 17 Si 0.887 3.113 18 H -0.285 1.285 19 H -0.288 1.288 20 H -0.273 1.273 21 H 0.036 0.964 22 H 0.104 0.896 23 H 0.019 0.981 24 H 0.033 0.967 25 H 0.047 0.953 26 H -0.004 1.004 27 H 0.118 0.882 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.014 0.986 31 H 0.020 0.980 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.033 0.967 37 H 0.351 0.649 38 H 0.304 0.696 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.577 -3.782 -4.297 7.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 C -0.186 4.186 4 C -0.003 4.003 5 H 0.038 0.962 6 N -0.258 5.258 7 C -0.123 4.123 8 C -0.067 4.067 9 C -0.158 4.158 10 C -0.183 4.183 11 C 0.167 3.833 12 N -0.358 5.358 13 C -0.542 4.542 14 H 0.098 0.902 15 C -0.131 4.131 16 N -0.536 5.536 17 Si 0.716 3.284 18 H -0.212 1.212 19 H -0.214 1.214 20 H -0.198 1.198 21 H 0.055 0.945 22 H 0.123 0.877 23 H 0.038 0.962 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.015 0.985 27 H 0.136 0.864 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.032 0.968 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.051 0.949 37 H 0.171 0.829 38 H 0.115 0.885 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.316 -3.081 -4.772 7.134 hybrid contribution -0.745 -1.281 1.017 1.797 sum 3.571 -4.363 -3.756 6.774 Atomic orbital electron populations 1.22474 0.95917 1.02564 0.99801 1.20836 0.95240 0.97821 0.94404 1.22231 1.01871 0.95567 0.98949 1.21908 0.83716 0.96602 0.98082 0.96197 1.61919 1.14916 1.48218 1.00751 1.22344 0.99327 0.96623 0.93975 1.22031 0.98087 0.94849 0.91750 1.21681 0.99893 0.99394 0.94817 1.22412 0.91170 1.00345 1.04333 1.18205 0.93209 0.85771 0.86130 1.59886 1.12397 1.15801 1.47682 1.21676 0.91058 1.27207 1.14305 0.90153 1.24874 0.97321 0.95639 0.95221 1.69551 1.34120 1.31232 1.18742 0.86673 0.86299 0.77190 0.78251 1.21166 1.21428 1.19829 0.94456 0.87723 0.96163 0.94873 0.93378 0.98500 0.86433 0.91281 0.92793 0.96767 0.96207 0.92448 0.92117 0.93634 0.89935 0.94856 0.82916 0.88465 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 7.49 37.16 0.28 -2.78 16 2 C -0.06 -1.28 2.38 -90.62 -0.22 -1.50 16 3 C -0.13 -2.62 7.59 37.16 0.28 -2.34 16 4 C 0.10 2.18 1.19 -67.72 -0.08 2.10 16 5 H 0.02 0.45 7.98 -51.93 -0.41 0.04 16 6 N -0.53 -9.85 3.50 -234.92 -0.82 -10.68 16 7 C 0.03 0.41 8.89 60.07 0.53 0.94 16 8 C 0.06 1.08 5.46 -3.84 -0.02 1.06 16 9 C -0.12 -2.27 5.76 -26.65 -0.15 -2.42 16 10 C -0.14 -3.21 4.76 -26.61 -0.13 -3.34 16 11 C 0.26 5.89 0.25 -132.67 -0.03 5.86 16 12 N -0.82 -18.47 4.53 -0.13 0.00 -18.48 16 13 C -0.50 -12.58 5.72 -34.44 -0.20 -12.77 16 14 H 0.08 2.00 4.23 -52.49 -0.22 1.78 16 15 C 0.07 1.79 5.24 -17.82 -0.09 1.70 16 16 N -0.90 -23.37 9.62 55.43 0.53 -22.84 16 17 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 H 0.04 0.75 7.17 -51.93 -0.37 0.38 16 22 H 0.10 2.38 5.10 -51.93 -0.26 2.12 16 23 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 24 H 0.03 0.62 6.00 -51.93 -0.31 0.31 16 25 H 0.05 0.97 6.71 -51.92 -0.35 0.62 16 26 H 0.00 -0.08 8.14 -51.92 -0.42 -0.50 16 27 H 0.12 2.69 5.49 -51.93 -0.29 2.41 16 28 H 0.07 1.09 6.45 -51.93 -0.34 0.75 16 29 H 0.05 0.75 7.97 -51.93 -0.41 0.33 16 30 H 0.01 0.22 8.11 -51.93 -0.42 -0.20 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.89 8.00 -51.92 -0.42 0.48 16 33 H 0.06 1.17 6.90 -51.93 -0.36 0.81 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 2.07 6.59 -51.93 -0.34 1.72 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.35 8.61 6.50 -39.29 -0.26 8.35 16 38 H 0.30 6.54 6.05 -39.29 -0.24 6.30 16 39 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 271.55 15.07 4.09 4.09 Total: -1.00 -24.50 271.55 -7.29 -31.80 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -6.25 Total: 14.12 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 0.17 Total: -13.49 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.29 Total: -51.99 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -24.50 -7.29 -31.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260803363.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.804 kcal (2) G-P(sol) polarization free energy of solvation -24.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds