Wall clock time and date at job start Mon Mar 30 2020 03:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47542 * 2 1 4 4 C 1.53007 * 109.47085 * 119.99759 * 2 1 3 5 5 H 1.09001 * 109.46171 * 171.97739 * 4 2 1 6 6 N 1.46847 * 109.46394 * 52.00993 * 4 2 1 7 7 C 1.46896 * 110.99901 * 54.14101 * 6 4 2 8 8 C 1.46844 * 111.20116 * 178.24263 * 6 4 2 9 9 C 1.53041 * 109.52009 * 61.74002 * 8 6 4 10 10 C 1.53124 * 109.27968 * 300.81910 * 9 8 6 11 11 C 1.53041 * 109.46261 * 291.95270 * 4 2 1 12 12 N 1.46889 * 109.50472 * 299.13877 * 11 4 2 13 13 C 1.50705 * 109.49842 * 59.25756 * 11 4 2 14 14 H 1.08001 * 120.00301 * 26.89241 * 13 11 4 15 15 C 1.37879 * 119.99582 * 206.89563 * 13 11 4 16 16 N 1.31523 * 120.00111 * 359.97438 * 15 13 11 17 17 Si 1.86795 * 120.00134 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46784 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47424 * 119.99618 * 17 15 13 20 20 H 1.48502 * 109.47415 * 240.00300 * 17 15 13 21 21 H 1.08992 * 109.46970 * 71.44572 * 1 2 3 22 22 H 1.08999 * 109.47136 * 191.45143 * 1 2 3 23 23 H 1.09002 * 109.46815 * 311.45150 * 1 2 3 24 24 H 1.09002 * 109.47417 * 239.99594 * 2 1 3 25 25 H 1.08998 * 109.47152 * 51.07532 * 3 2 1 26 26 H 1.08994 * 109.47625 * 171.07820 * 3 2 1 27 27 H 1.09004 * 109.47107 * 291.07862 * 3 2 1 28 28 H 1.09003 * 109.47115 * 60.59888 * 7 6 4 29 29 H 1.09003 * 109.46954 * 180.59931 * 7 6 4 30 30 H 1.08997 * 109.47403 * 300.59599 * 7 6 4 31 31 H 1.09004 * 109.45955 * 301.72618 * 8 6 4 32 32 H 1.08993 * 109.46306 * 181.75306 * 8 6 4 33 33 H 1.08998 * 109.49959 * 180.88244 * 9 8 6 34 34 H 1.08995 * 109.50529 * 60.76727 * 9 8 6 35 35 H 1.09000 * 109.52469 * 297.75360 * 10 9 8 36 36 H 1.08999 * 109.57294 * 177.59388 * 10 9 8 37 37 H 1.00900 * 111.00733 * 179.97438 * 12 11 4 38 38 H 1.00906 * 111.00267 * 303.95452 * 12 11 4 39 39 H 0.96997 * 119.99645 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1205 -0.8470 1.1804 6 7 1.3996 -2.0389 1.3493 7 6 1.5881 -2.8109 0.1139 8 6 1.8939 -2.7825 2.5151 9 6 1.5508 -2.0152 3.7941 10 6 2.1957 -0.6274 3.7395 11 6 1.7014 0.1076 2.4905 12 7 2.3593 1.4177 2.3999 13 6 0.2089 0.2980 2.5764 14 1 -0.4548 -0.4305 2.1345 15 6 -0.3093 1.4023 3.2192 16 7 0.4990 2.2892 3.7577 17 14 -2.1592 1.6388 3.3251 18 1 -2.8423 0.5092 2.6449 19 1 -2.5720 1.6811 4.7509 20 1 -2.5339 2.9142 2.6631 21 1 -0.3633 0.3270 -0.9742 22 1 -0.3633 -1.0072 0.2040 23 1 -0.3633 0.6803 0.7703 24 1 1.8934 -0.5139 -0.8899 25 1 1.5525 2.0002 0.7995 26 1 3.1183 1.4466 0.1594 27 1 1.8128 1.9082 -0.9589 28 1 2.6533 -2.9621 -0.0612 29 1 1.0950 -3.7782 0.2111 30 1 1.1559 -2.2655 -0.7250 31 1 2.9752 -2.8985 2.4401 32 1 1.4244 -3.7657 2.5445 33 1 1.9316 -2.5596 4.6582 34 1 0.4690 -1.9109 3.8768 35 1 3.2799 -0.7310 3.6960 36 1 1.9192 -0.0611 4.6288 37 1 2.1505 1.9841 3.2084 38 1 3.3557 1.3144 2.2781 39 1 0.1344 3.0658 4.2102 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260803370.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:36 Heat of formation + Delta-G solvation = 22.516240 kcal Electronic energy + Delta-G solvation = -18106.259783 eV Core-core repulsion = 15663.385616 eV Total energy + Delta-G solvation = -2442.874167 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.85338 -36.29597 -35.50586 -33.37417 -31.54791 -29.10252 -27.84989 -27.18386 -26.44624 -23.67621 -22.35999 -21.11780 -19.83295 -17.70741 -16.91960 -16.53635 -15.87345 -15.60345 -15.41717 -15.13838 -14.30372 -14.05757 -13.83165 -13.44281 -13.30282 -13.04556 -12.88134 -12.71331 -12.63573 -12.48522 -12.27007 -11.98585 -11.75708 -11.59180 -11.44921 -11.19146 -10.99978 -10.68746 -10.60719 -10.14605 -8.90800 -8.19856 -7.74863 -5.79655 1.46721 1.53316 1.60956 2.57821 3.22790 3.40887 4.17158 4.22247 4.33570 4.36395 4.59002 4.61786 4.66808 4.75014 4.78004 4.89355 4.97216 5.00981 5.08500 5.12004 5.20304 5.21820 5.28037 5.39928 5.57013 5.62782 5.64309 5.71614 5.92988 6.09618 6.21132 6.32423 6.46505 6.51856 6.70917 6.92470 7.57365 7.64633 7.99770 9.17860 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024620 B = 0.013873 C = 0.012724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.991502 B = 2017.878916 C = 2200.092500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.058 4.058 3 C -0.130 4.130 4 C 0.116 3.884 5 H -0.003 1.003 6 N -0.536 5.536 7 C 0.025 3.975 8 C 0.066 3.934 9 C -0.100 4.100 10 C -0.133 4.133 11 C 0.239 3.761 12 N -0.828 5.828 13 C -0.441 4.441 14 H 0.072 0.928 15 C 0.017 3.983 16 N -0.913 5.913 17 Si 0.934 3.066 18 H -0.270 1.270 19 H -0.294 1.294 20 H -0.292 1.292 21 H 0.021 0.979 22 H 0.052 0.948 23 H 0.080 0.920 24 H 0.042 0.958 25 H 0.100 0.900 26 H 0.031 0.969 27 H 0.014 0.986 28 H 0.017 0.983 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.019 0.981 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.020 0.980 36 H 0.028 0.972 37 H 0.363 0.637 38 H 0.282 0.718 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.613 -7.278 -3.877 8.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.077 4.077 3 C -0.188 4.188 4 C 0.007 3.993 5 H 0.015 0.985 6 N -0.260 5.260 7 C -0.123 4.123 8 C -0.062 4.062 9 C -0.138 4.138 10 C -0.173 4.173 11 C 0.146 3.854 12 N -0.374 5.374 13 C -0.480 4.480 14 H 0.090 0.910 15 C -0.178 4.178 16 N -0.559 5.559 17 Si 0.763 3.237 18 H -0.195 1.195 19 H -0.221 1.221 20 H -0.219 1.219 21 H 0.040 0.960 22 H 0.071 0.929 23 H 0.099 0.901 24 H 0.060 0.940 25 H 0.118 0.882 26 H 0.050 0.950 27 H 0.033 0.967 28 H 0.036 0.964 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.038 0.962 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.047 0.953 37 H 0.197 0.803 38 H 0.092 0.908 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.604 -6.877 -4.296 8.266 hybrid contribution 0.647 -0.026 1.037 1.223 sum 2.251 -6.904 -3.259 7.959 Atomic orbital electron populations 1.22280 0.95398 1.02601 0.99580 1.20754 0.96588 0.96087 0.94285 1.22126 0.99946 0.96697 0.99987 1.21566 0.91682 0.88599 0.97459 0.98544 1.61769 1.58474 1.02860 1.02898 1.22426 0.98784 0.98395 0.92693 1.22005 0.96448 0.96977 0.90721 1.21370 1.01177 0.95084 0.96171 1.22370 0.96009 0.97278 1.01658 1.18481 0.93680 0.85778 0.87438 1.60294 1.08842 1.16132 1.52140 1.21341 0.91534 1.05099 1.30044 0.91000 1.25356 0.99597 0.96583 0.96265 1.68783 1.33518 1.13123 1.40434 0.85871 0.83598 0.77525 0.76720 1.19491 1.22076 1.21891 0.96045 0.92884 0.90149 0.93996 0.88203 0.94951 0.96659 0.96436 0.90518 0.91296 0.96241 0.89842 0.92120 0.92285 0.96102 0.95294 0.80250 0.90824 0.93525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.79 7.16 71.98 0.52 -5.28 16 2 C -0.06 -2.30 2.18 -10.79 -0.02 -2.32 16 3 C -0.13 -5.30 7.63 71.98 0.55 -4.75 16 4 C 0.12 4.67 1.44 44.94 0.06 4.73 16 5 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 6 N -0.54 -19.45 3.02 -897.16 -2.71 -22.16 16 7 C 0.03 0.74 8.69 127.69 1.11 1.85 16 8 C 0.07 2.22 5.46 86.33 0.47 2.69 16 9 C -0.10 -3.75 5.84 30.65 0.18 -3.57 16 10 C -0.13 -5.75 5.07 30.67 0.16 -5.59 16 11 C 0.24 10.73 0.42 2.84 0.00 10.73 16 12 N -0.83 -38.05 4.32 -154.33 -0.67 -38.72 16 13 C -0.44 -21.62 3.30 25.60 0.08 -21.54 16 14 H 0.07 3.63 5.52 -2.91 -0.02 3.62 16 15 C 0.02 0.88 5.26 84.65 0.44 1.32 16 16 N -0.91 -48.21 10.06 21.45 0.22 -48.00 16 17 Si 0.93 42.76 29.47 68.60 2.02 44.78 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 21 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 22 H 0.05 2.14 5.91 -2.39 -0.01 2.12 16 23 H 0.08 3.79 4.64 -2.39 -0.01 3.78 16 24 H 0.04 1.51 6.81 -2.39 -0.02 1.50 16 25 H 0.10 4.77 5.45 -2.39 -0.01 4.76 16 26 H 0.03 1.26 7.41 -2.39 -0.02 1.24 16 27 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.08 1.95 8.10 -2.39 -0.02 1.93 16 30 H 0.07 2.06 5.73 -2.39 -0.01 2.05 16 31 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.08 2.40 8.09 -2.39 -0.02 2.38 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.06 2.46 7.35 -2.39 -0.02 2.44 16 35 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.36 18.27 5.48 -96.98 -0.53 17.74 16 38 H 0.28 12.09 8.45 -89.69 -0.76 11.33 16 39 H 0.25 13.18 8.31 -92.71 -0.77 12.41 16 Total: -1.00 -51.46 273.02 2.16 -49.29 By element: Atomic # 1 Polarization: 36.77 SS G_CDS: -0.25 Total: 36.52 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: 3.55 Total: -21.72 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -3.16 Total: -108.87 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.02 Total: 44.78 kcal Total: -51.46 2.16 -49.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260803370.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.811 kcal (2) G-P(sol) polarization free energy of solvation -51.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds