Wall clock time and date at job start Mon Mar 30 2020 02:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42901 * 109.47144 * 2 1 4 4 C 1.42893 * 113.99930 * 181.14973 * 3 2 1 5 5 C 1.52998 * 109.47568 * 53.90052 * 4 3 2 6 6 C 1.50706 * 109.47021 * 293.90262 * 4 3 2 7 7 H 1.08001 * 119.99936 * 146.49607 * 6 4 3 8 8 C 1.37880 * 119.99798 * 326.48805 * 6 4 3 9 9 N 1.31517 * 119.99858 * 194.09806 * 8 6 4 10 10 Si 1.86792 * 119.99983 * 14.09655 * 8 6 4 11 11 H 1.48506 * 109.47025 * 84.22966 * 10 8 6 12 12 H 1.48498 * 109.47055 * 204.22928 * 10 8 6 13 13 H 1.48497 * 109.47504 * 324.23285 * 10 8 6 14 14 C 1.53004 * 109.47457 * 173.90181 * 4 3 2 15 15 C 1.52997 * 109.46874 * 306.42864 * 14 4 3 16 16 C 1.52997 * 109.47115 * 179.97438 * 15 14 4 17 17 C 1.52998 * 109.47129 * 299.99927 * 16 15 14 18 18 C 1.53001 * 109.47394 * 59.99920 * 17 16 15 19 19 C 1.53004 * 109.46807 * 300.00006 * 18 17 16 20 20 H 1.08999 * 109.47019 * 63.39990 * 1 2 3 21 21 H 1.08992 * 109.47451 * 183.40452 * 1 2 3 22 22 H 1.09006 * 109.46962 * 303.40814 * 1 2 3 23 23 H 1.08997 * 109.46935 * 239.99768 * 2 1 3 24 24 H 1.08994 * 109.46664 * 119.99985 * 2 1 3 25 25 H 1.08998 * 109.47887 * 180.02562 * 5 4 3 26 26 H 1.09007 * 109.47124 * 300.00148 * 5 4 3 27 27 H 1.08997 * 109.46799 * 59.99895 * 5 4 3 28 28 H 0.96992 * 119.99713 * 180.02562 * 9 8 6 29 29 H 1.08994 * 109.47521 * 186.42397 * 14 4 3 30 30 H 1.08994 * 109.47427 * 59.99476 * 15 14 4 31 31 H 1.09003 * 109.46895 * 299.99945 * 15 14 4 32 32 H 1.09002 * 109.47203 * 179.97438 * 16 15 14 33 33 H 1.09000 * 109.47170 * 59.99967 * 16 15 14 34 34 H 1.09000 * 109.47368 * 180.02562 * 17 16 15 35 35 H 1.09000 * 109.47127 * 300.00066 * 17 16 15 36 36 H 1.09000 * 109.46864 * 59.99985 * 18 17 16 37 37 H 1.09000 * 109.47071 * 180.02562 * 18 17 16 38 38 H 1.08994 * 109.47521 * 300.00102 * 19 18 17 39 39 H 1.08998 * 109.47056 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4306 1.4602 -0.0262 5 6 3.9840 0.6611 -1.2077 6 6 4.0013 0.9173 1.2587 7 1 4.9591 0.4183 1.2558 8 6 3.3006 1.0578 2.4378 9 7 3.9000 0.8428 3.5885 10 14 1.5000 1.5534 2.4009 11 1 0.6589 0.3476 2.1916 12 1 1.1361 2.1930 3.6907 13 1 1.2735 2.5136 1.2910 14 6 3.8230 2.9313 -0.1770 15 6 3.1138 3.5259 -1.3954 16 6 3.5056 4.9972 -1.5459 17 6 3.0922 5.7662 -0.2895 18 6 3.8014 5.1716 0.9289 19 6 3.4095 3.7003 1.0794 20 1 -0.3633 0.4601 -0.9189 21 1 -0.3634 -1.0258 0.0610 22 1 -0.3633 0.5659 0.8579 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 5.0705 0.7468 -1.2275 26 1 3.7045 -0.3871 -1.1003 27 1 3.5713 1.0537 -2.1370 28 1 3.4070 0.9413 4.4180 29 1 4.9019 3.0077 -0.3115 30 1 2.0349 3.4495 -1.2609 31 1 3.4080 2.9777 -2.2904 32 1 3.0007 5.4207 -2.4141 33 1 4.5846 5.0739 -1.6803 34 1 3.3709 6.8144 -0.3969 35 1 2.0133 5.6894 -0.1551 36 1 4.8803 5.2483 0.7945 37 1 3.5065 5.7192 1.8240 38 1 2.3305 3.6235 1.2137 39 1 3.9150 3.2766 1.9471 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260811696.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:35 Heat of formation + Delta-G solvation = -48.426491 kcal Electronic energy + Delta-G solvation = -17772.787063 eV Core-core repulsion = 15294.543837 eV Total energy + Delta-G solvation = -2478.243226 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.00874 -36.71105 -32.97029 -31.75113 -30.08855 -29.78502 -28.30181 -25.46054 -22.84428 -21.61242 -21.44765 -19.59563 -18.71951 -17.01138 -16.07626 -15.26808 -14.39654 -13.92692 -13.75942 -13.52317 -13.36364 -12.77588 -12.68558 -12.36030 -11.93049 -11.62358 -11.52031 -11.42047 -11.19968 -10.92867 -10.62445 -10.49623 -10.38414 -10.03323 -9.98737 -9.85394 -9.57438 -9.22750 -9.01023 -8.49533 -8.36949 -7.54574 -6.03934 -4.09926 3.49578 3.63568 3.83314 4.63986 4.82024 5.20112 5.33363 5.41366 5.49333 5.73427 5.90827 5.93237 5.96949 6.09437 6.14159 6.17522 6.18585 6.25592 6.28568 6.31496 6.42488 6.46927 6.56738 6.59830 6.65561 6.72744 6.76537 6.78848 6.93368 6.95389 7.10800 7.34948 7.47201 7.51799 7.77767 8.14308 8.66133 8.95474 9.60975 11.04516 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024214 B = 0.014189 C = 0.012226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.085310 B = 1972.853850 C = 2289.705971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.042 3.958 3 O -0.372 6.372 4 C 0.205 3.795 5 C -0.162 4.162 6 C -0.550 4.550 7 H 0.072 0.928 8 C 0.076 3.924 9 N -0.893 5.893 10 Si 0.907 3.093 11 H -0.281 1.281 12 H -0.338 1.338 13 H -0.222 1.222 14 C -0.052 4.052 15 C -0.115 4.115 16 C -0.117 4.117 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.130 4.130 20 H 0.053 0.947 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.042 0.958 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.262 0.738 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.694 4.559 -8.424 10.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.034 4.034 3 O -0.293 6.293 4 C 0.167 3.833 5 C -0.219 4.219 6 C -0.587 4.587 7 H 0.090 0.910 8 C -0.127 4.127 9 N -0.529 5.529 10 Si 0.745 3.255 11 H -0.209 1.209 12 H -0.271 1.271 13 H -0.149 1.149 14 C -0.071 4.071 15 C -0.153 4.153 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.167 4.167 20 H 0.072 0.928 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.786 4.686 -8.249 10.215 hybrid contribution -0.570 -0.153 0.172 0.615 sum -4.356 4.533 -8.077 10.235 Atomic orbital electron populations 1.22072 0.95817 1.01393 1.02139 1.22346 0.93269 0.86802 1.00987 1.88116 1.24434 1.24232 1.92560 1.19597 0.77732 0.92057 0.93895 1.22363 1.00754 1.00469 0.98323 1.21201 1.07210 1.39701 0.90621 0.90950 1.25136 0.99760 0.93049 0.94791 1.70049 1.36810 1.48426 0.97626 0.87303 0.84253 0.80155 0.73763 1.20889 1.27148 1.14887 1.21053 0.98402 0.94280 0.93372 1.21654 1.01309 0.93959 0.98377 1.21534 1.00409 0.96666 0.96811 1.21517 1.00298 0.97900 0.95658 1.21580 0.99649 0.97748 0.96670 1.22040 1.02573 0.92393 0.99692 0.92832 0.92256 0.91934 0.93965 0.92053 0.93016 0.93202 0.94327 0.92902 0.91703 0.91720 0.93014 0.93277 0.92694 0.93318 0.92511 0.92754 0.93144 0.91095 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.50 37.16 0.35 -2.44 16 2 C 0.04 0.87 4.52 37.16 0.17 1.04 16 3 O -0.37 -8.32 4.59 -35.23 -0.16 -8.48 16 4 C 0.20 4.64 0.38 -91.77 -0.03 4.60 16 5 C -0.16 -3.23 7.81 37.16 0.29 -2.94 16 6 C -0.55 -14.89 7.31 -34.44 -0.25 -15.14 16 7 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 8 C 0.08 2.14 3.79 -17.82 -0.07 2.07 16 9 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 10 Si 0.91 22.77 19.45 -169.99 -3.31 19.46 16 11 H -0.28 -6.70 4.58 56.52 0.26 -6.44 16 12 H -0.34 -9.01 7.11 56.52 0.40 -8.60 16 13 H -0.22 -5.32 3.78 56.52 0.21 -5.11 16 14 C -0.05 -1.08 1.61 -90.62 -0.15 -1.23 16 15 C -0.12 -2.06 4.77 -26.73 -0.13 -2.19 16 16 C -0.12 -1.79 5.92 -26.73 -0.16 -1.95 16 17 C -0.12 -1.81 5.92 -26.73 -0.16 -1.97 16 18 C -0.12 -2.11 5.92 -26.73 -0.16 -2.27 16 19 C -0.13 -2.81 3.48 -26.73 -0.09 -2.90 16 20 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 21 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.06 1.19 5.22 -51.93 -0.27 0.92 16 23 H 0.04 0.80 6.26 -51.93 -0.33 0.48 16 24 H 0.06 1.43 5.59 -51.93 -0.29 1.14 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.05 0.99 6.45 -51.92 -0.34 0.65 16 27 H 0.04 0.69 6.61 -51.93 -0.34 0.35 16 28 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.06 1.23 7.53 -51.93 -0.39 0.84 16 31 H 0.05 0.87 6.61 -51.93 -0.34 0.53 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.62 4.38 -51.93 -0.23 1.39 16 39 H 0.08 2.13 5.88 -51.93 -0.31 1.83 16 LS Contribution 266.75 15.07 4.02 4.02 Total: -1.00 -28.90 266.75 -6.01 -34.91 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.95 Total: 1.67 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: -0.38 Total: -25.32 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.77 Total: -26.26 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.16 Total: -8.48 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -3.31 Total: 19.46 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.90 -6.01 -34.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260811696.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.515 kcal (2) G-P(sol) polarization free energy of solvation -28.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds