Wall clock time and date at job start Mon Mar 30 2020 02:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42901 * 109.47144 * 2 1 4 4 C 1.42893 * 113.99930 * 181.14973 * 3 2 1 5 5 C 1.52998 * 109.47568 * 53.90052 * 4 3 2 6 6 C 1.50706 * 109.47021 * 293.90262 * 4 3 2 7 7 H 1.08001 * 119.99936 * 146.49607 * 6 4 3 8 8 C 1.37880 * 119.99798 * 326.48805 * 6 4 3 9 9 N 1.31517 * 119.99858 * 194.09806 * 8 6 4 10 10 Si 1.86792 * 119.99983 * 14.09655 * 8 6 4 11 11 H 1.48506 * 109.47025 * 84.22966 * 10 8 6 12 12 H 1.48498 * 109.47055 * 204.22928 * 10 8 6 13 13 H 1.48497 * 109.47504 * 324.23285 * 10 8 6 14 14 C 1.53004 * 109.47457 * 173.90181 * 4 3 2 15 15 C 1.52997 * 109.46874 * 306.42864 * 14 4 3 16 16 C 1.52997 * 109.47115 * 179.97438 * 15 14 4 17 17 C 1.52998 * 109.47129 * 299.99927 * 16 15 14 18 18 C 1.53001 * 109.47394 * 59.99920 * 17 16 15 19 19 C 1.53004 * 109.46807 * 300.00006 * 18 17 16 20 20 H 1.08999 * 109.47019 * 63.39990 * 1 2 3 21 21 H 1.08992 * 109.47451 * 183.40452 * 1 2 3 22 22 H 1.09006 * 109.46962 * 303.40814 * 1 2 3 23 23 H 1.08997 * 109.46935 * 239.99768 * 2 1 3 24 24 H 1.08994 * 109.46664 * 119.99985 * 2 1 3 25 25 H 1.08998 * 109.47887 * 180.02562 * 5 4 3 26 26 H 1.09007 * 109.47124 * 300.00148 * 5 4 3 27 27 H 1.08997 * 109.46799 * 59.99895 * 5 4 3 28 28 H 0.96992 * 119.99713 * 180.02562 * 9 8 6 29 29 H 1.08994 * 109.47521 * 186.42397 * 14 4 3 30 30 H 1.08994 * 109.47427 * 59.99476 * 15 14 4 31 31 H 1.09003 * 109.46895 * 299.99945 * 15 14 4 32 32 H 1.09002 * 109.47203 * 179.97438 * 16 15 14 33 33 H 1.09000 * 109.47170 * 59.99967 * 16 15 14 34 34 H 1.09000 * 109.47368 * 180.02562 * 17 16 15 35 35 H 1.09000 * 109.47127 * 300.00066 * 17 16 15 36 36 H 1.09000 * 109.46864 * 59.99985 * 18 17 16 37 37 H 1.09000 * 109.47071 * 180.02562 * 18 17 16 38 38 H 1.08994 * 109.47521 * 300.00102 * 19 18 17 39 39 H 1.08998 * 109.47056 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4306 1.4602 -0.0262 5 6 3.9840 0.6611 -1.2077 6 6 4.0013 0.9173 1.2587 7 1 4.9591 0.4183 1.2558 8 6 3.3006 1.0578 2.4378 9 7 3.9000 0.8428 3.5885 10 14 1.5000 1.5534 2.4009 11 1 0.6589 0.3476 2.1916 12 1 1.1361 2.1930 3.6907 13 1 1.2735 2.5136 1.2910 14 6 3.8230 2.9313 -0.1770 15 6 3.1138 3.5259 -1.3954 16 6 3.5056 4.9972 -1.5459 17 6 3.0922 5.7662 -0.2895 18 6 3.8014 5.1716 0.9289 19 6 3.4095 3.7003 1.0794 20 1 -0.3633 0.4601 -0.9189 21 1 -0.3634 -1.0258 0.0610 22 1 -0.3633 0.5659 0.8579 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 5.0705 0.7468 -1.2275 26 1 3.7045 -0.3871 -1.1003 27 1 3.5713 1.0537 -2.1370 28 1 3.4070 0.9413 4.4180 29 1 4.9019 3.0077 -0.3115 30 1 2.0349 3.4495 -1.2609 31 1 3.4080 2.9777 -2.2904 32 1 3.0007 5.4207 -2.4141 33 1 4.5846 5.0739 -1.6803 34 1 3.3709 6.8144 -0.3969 35 1 2.0133 5.6894 -0.1551 36 1 4.8803 5.2483 0.7945 37 1 3.5065 5.7192 1.8240 38 1 2.3305 3.6235 1.2137 39 1 3.9150 3.2766 1.9471 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260811696.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:34 Heat of formation + Delta-G solvation = -66.801830 kcal Electronic energy + Delta-G solvation = -17773.583878 eV Core-core repulsion = 15294.543837 eV Total energy + Delta-G solvation = -2479.040040 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.69571 -38.25043 -34.84594 -33.61915 -31.57270 -31.33196 -29.87697 -27.47428 -24.42872 -23.09290 -22.99053 -21.15308 -20.39666 -19.04430 -17.90473 -16.84643 -16.15384 -15.58514 -15.49004 -15.01214 -14.80861 -14.67945 -14.21027 -14.12580 -13.45353 -13.11869 -13.09899 -12.96762 -12.82992 -12.48862 -12.22996 -12.19071 -11.88712 -11.80919 -11.65595 -11.49508 -11.22189 -10.95027 -10.59160 -10.47542 -10.29759 -9.40045 -8.27232 -6.34106 1.45889 1.54814 1.78577 2.52260 2.98616 3.26077 3.96715 4.06927 4.09744 4.24264 4.41772 4.47775 4.53295 4.64122 4.66362 4.68320 4.72438 4.79838 4.82219 4.87826 4.94939 4.99675 5.04688 5.11459 5.25445 5.26933 5.33528 5.38433 5.42937 5.45380 5.55643 5.62041 5.70078 5.82073 5.92037 6.04468 6.66469 6.78234 7.41674 8.84995 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024214 B = 0.014189 C = 0.012226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.085310 B = 1972.853850 C = 2289.705971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.033 3.967 3 O -0.374 6.374 4 C 0.201 3.799 5 C -0.156 4.156 6 C -0.544 4.544 7 H 0.030 0.970 8 C 0.033 3.967 9 N -0.944 5.944 10 Si 0.952 3.048 11 H -0.260 1.260 12 H -0.364 1.364 13 H -0.200 1.200 14 C -0.053 4.053 15 C -0.107 4.107 16 C -0.113 4.113 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.128 4.128 20 H 0.077 0.923 21 H 0.084 0.916 22 H 0.047 0.953 23 H 0.063 0.937 24 H 0.028 0.972 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.258 0.742 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.233 5.881 -11.469 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.043 4.043 3 O -0.296 6.296 4 C 0.163 3.837 5 C -0.213 4.213 6 C -0.581 4.581 7 H 0.048 0.952 8 C -0.165 4.165 9 N -0.583 5.583 10 Si 0.789 3.211 11 H -0.187 1.187 12 H -0.300 1.300 13 H -0.126 1.126 14 C -0.072 4.072 15 C -0.145 4.145 16 C -0.151 4.151 17 C -0.150 4.150 18 C -0.155 4.155 19 C -0.165 4.165 20 H 0.096 0.904 21 H 0.103 0.897 22 H 0.066 0.934 23 H 0.081 0.919 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.327 5.995 -11.339 13.888 hybrid contribution 0.021 -0.629 1.126 1.290 sum -5.306 5.366 -10.212 12.698 Atomic orbital electron populations 1.22067 0.93107 1.03163 1.02727 1.22533 0.95511 0.85791 1.00426 1.88050 1.23748 1.25447 1.92324 1.19604 0.78034 0.93624 0.92469 1.22264 1.00724 1.00023 0.98313 1.21472 1.05398 1.38250 0.92997 0.95195 1.25815 1.03251 0.93128 0.94329 1.70182 1.38311 1.51482 0.98362 0.86637 0.80476 0.81032 0.72950 1.18670 1.29966 1.12609 1.21007 0.98445 0.92999 0.94753 1.21563 1.00182 0.95903 0.96835 1.21530 1.01247 0.94661 0.97639 1.21507 0.99813 0.99378 0.94306 1.21562 1.00304 0.95112 0.98548 1.21906 1.00970 0.95194 0.98391 0.90376 0.89738 0.93384 0.91873 0.95398 0.93145 0.93407 0.91342 0.93337 0.92327 0.92538 0.91548 0.90473 0.91958 0.90483 0.92689 0.92336 0.92744 0.92395 0.94292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 9.50 71.98 0.68 -4.24 16 2 C 0.03 1.31 4.52 71.98 0.33 1.64 16 3 O -0.37 -16.03 4.59 -148.98 -0.68 -16.71 16 4 C 0.20 8.94 0.38 -11.54 0.00 8.94 16 5 C -0.16 -5.95 7.81 71.98 0.56 -5.38 16 6 C -0.54 -30.48 7.31 25.60 0.19 -30.29 16 7 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 8 C 0.03 1.93 3.79 84.66 0.32 2.25 16 9 N -0.94 -60.34 13.96 21.45 0.30 -60.04 16 10 Si 0.95 47.90 19.45 68.60 1.33 49.24 16 11 H -0.26 -12.08 4.58 99.48 0.46 -11.63 16 12 H -0.36 -19.75 7.11 99.48 0.71 -19.04 16 13 H -0.20 -9.32 3.78 99.48 0.38 -8.94 16 14 C -0.05 -2.14 1.61 -10.79 -0.02 -2.16 16 15 C -0.11 -3.44 4.77 30.59 0.15 -3.29 16 16 C -0.11 -2.97 5.92 30.59 0.18 -2.79 16 17 C -0.11 -3.09 5.92 30.59 0.18 -2.90 16 18 C -0.12 -3.99 5.92 30.60 0.18 -3.81 16 19 C -0.13 -5.49 3.48 30.60 0.11 -5.38 16 20 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 21 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 22 H 0.05 1.67 5.22 -2.38 -0.01 1.66 16 23 H 0.06 2.21 6.26 -2.39 -0.01 2.20 16 24 H 0.03 1.28 5.59 -2.39 -0.01 1.27 16 25 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.05 1.81 6.45 -2.38 -0.02 1.80 16 27 H 0.07 2.20 6.61 -2.39 -0.02 2.19 16 28 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 29 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.06 1.92 7.53 -2.39 -0.02 1.90 16 31 H 0.07 1.93 6.61 -2.39 -0.02 1.92 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 2.60 4.38 -2.39 -0.01 2.59 16 39 H 0.04 2.01 5.88 -2.39 -0.01 2.00 16 Total: -1.00 -65.59 266.75 4.22 -61.37 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.42 Total: 13.58 kcal Atomic # 6 Polarization: -50.28 SS G_CDS: 2.85 Total: -47.43 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.30 Total: -60.04 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.68 Total: -16.71 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 1.33 Total: 49.24 kcal Total: -65.59 4.22 -61.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260811696.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.436 kcal (2) G-P(sol) polarization free energy of solvation -65.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds