Wall clock time and date at job start Mon Mar 30 2020 03:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46850 * 110.99556 * 2 1 4 4 C 1.53042 * 109.52330 * 185.83938 * 3 2 1 5 5 C 1.53121 * 109.27739 * 300.82452 * 4 3 2 6 6 C 1.50695 * 109.52354 * 297.74667 * 5 4 3 7 7 H 1.08002 * 119.99846 * 24.10260 * 6 5 4 8 8 C 1.37874 * 119.99851 * 204.09487 * 6 5 4 9 9 N 1.31510 * 120.00051 * 4.67542 * 8 6 5 10 10 Si 1.86803 * 119.99748 * 184.66728 * 8 6 5 11 11 H 1.48501 * 109.47403 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47144 * 120.00496 * 10 8 6 13 13 H 1.48508 * 109.47002 * 240.00170 * 10 8 6 14 14 C 1.53002 * 109.57167 * 177.58990 * 5 4 3 15 15 N 1.46895 * 109.47168 * 66.84437 * 14 5 4 16 16 C 1.53121 * 109.15787 * 57.65442 * 5 4 3 17 17 C 1.53006 * 109.49758 * 182.40129 * 16 5 4 18 18 C 1.53000 * 109.53549 * 62.30598 * 16 5 4 19 19 C 1.46844 * 111.00418 * 124.21196 * 2 1 3 20 20 H 1.08993 * 109.47054 * 295.78112 * 1 2 3 21 21 H 1.09008 * 109.46397 * 175.78640 * 1 2 3 22 22 H 1.09002 * 109.47325 * 55.78919 * 1 2 3 23 23 H 1.08999 * 109.46760 * 305.86063 * 3 2 1 24 24 H 1.08998 * 109.45800 * 65.82688 * 3 2 1 25 25 H 1.08999 * 109.50366 * 180.88311 * 4 3 2 26 26 H 1.09001 * 109.53030 * 60.78660 * 4 3 2 27 27 H 0.97008 * 120.00020 * 179.97438 * 9 8 6 28 28 H 1.08999 * 109.47106 * 186.84807 * 14 5 4 29 29 H 1.09001 * 109.47002 * 306.84368 * 14 5 4 30 30 H 1.00901 * 110.99765 * 174.91587 * 15 14 5 31 31 H 1.00903 * 111.00388 * 298.87071 * 15 14 5 32 32 H 1.08998 * 109.46833 * 179.80249 * 17 16 5 33 33 H 1.08999 * 109.47035 * 299.80053 * 17 16 5 34 34 H 1.09002 * 109.47106 * 59.80908 * 17 16 5 35 35 H 1.08994 * 109.47314 * 300.17033 * 18 16 5 36 36 H 1.08993 * 109.47279 * 60.17690 * 18 16 5 37 37 H 1.08999 * 109.46654 * 180.17434 * 18 16 5 38 38 H 1.08997 * 109.46241 * 294.18372 * 19 2 1 39 39 H 1.09002 * 109.46120 * 54.15688 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3344 -0.1468 5 6 4.1188 0.5371 1.0143 6 6 3.8007 1.2262 2.3162 7 1 2.9446 1.8809 2.3855 8 6 4.6025 1.0206 3.4189 9 7 5.6956 0.2974 3.3114 10 14 4.1360 1.7694 5.0654 11 1 2.8702 2.5325 4.9215 12 1 3.9506 0.6881 6.0663 13 1 5.2163 2.6826 5.5177 14 6 5.6363 0.4451 0.8420 15 7 6.2281 1.7811 0.9928 16 6 3.5182 -0.8714 1.0206 17 6 4.0683 -1.6558 2.2136 18 6 3.8877 -1.5910 -0.2780 19 6 1.9954 -0.7708 1.1337 20 1 -0.3633 0.4469 0.9253 21 1 -0.3632 -1.0250 -0.0755 22 1 -0.3634 0.5778 -0.8499 23 1 1.5633 1.9259 -0.8329 24 1 1.7324 1.8608 0.9376 25 1 3.9098 2.3514 -0.1310 26 1 3.7819 0.8574 -1.0907 27 1 6.2599 0.1531 4.0871 28 1 6.0482 -0.2223 1.5990 29 1 5.8664 0.0556 -0.1497 30 1 7.2357 1.7354 0.9658 31 1 5.8759 2.4141 0.2903 32 1 3.6377 -2.6571 2.2197 33 1 5.1529 -1.7271 2.1326 34 1 3.8059 -1.1420 3.1384 35 1 3.4969 -1.0311 -1.1276 36 1 4.9724 -1.6624 -0.3579 37 1 3.4570 -2.5923 -0.2737 38 1 1.7325 -0.2710 2.0659 39 1 1.5637 -1.7716 1.1240 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260900567.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:10 Heat of formation + Delta-G solvation = 19.465987 kcal Electronic energy + Delta-G solvation = -17994.115887 eV Core-core repulsion = 15551.109451 eV Total energy + Delta-G solvation = -2443.006436 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.22145 -35.23575 -32.60187 -31.62094 -30.48228 -26.63698 -26.39502 -25.69096 -23.92644 -23.10884 -20.30057 -19.98911 -17.57582 -15.31723 -15.09467 -14.69920 -14.41452 -14.04187 -13.75664 -13.48094 -12.86658 -12.51960 -12.35175 -11.95057 -11.70404 -11.35182 -11.17429 -11.04820 -10.81140 -10.66823 -10.53617 -10.43042 -10.34069 -9.90783 -9.74909 -9.58159 -8.98326 -8.61255 -8.38416 -8.02808 -7.45445 -6.93723 -5.52905 -3.76777 3.38753 3.47913 3.50603 4.58409 4.74194 5.48292 5.67777 5.79175 5.89537 6.03626 6.14783 6.20507 6.22851 6.29814 6.35592 6.48880 6.49925 6.68985 6.75934 6.82891 6.88770 6.92410 7.05880 7.07882 7.15657 7.37464 7.41637 7.55090 7.69872 7.80939 7.88430 7.99472 8.08243 8.44171 8.57562 8.83322 9.01731 9.21610 9.87364 11.26761 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025255 B = 0.013433 C = 0.011888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.405535 B = 2083.898581 C = 2354.730561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.542 5.542 3 C 0.065 3.935 4 C -0.103 4.103 5 C 0.083 3.917 6 C -0.482 4.482 7 H 0.045 0.955 8 C 0.089 3.911 9 N -0.865 5.865 10 Si 0.878 3.122 11 H -0.281 1.281 12 H -0.290 1.290 13 H -0.288 1.288 14 C 0.073 3.927 15 N -0.808 5.808 16 C -0.043 4.043 17 C -0.113 4.113 18 C -0.132 4.132 19 C 0.078 3.922 20 H 0.017 0.983 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.046 0.954 24 H 0.039 0.961 25 H 0.052 0.948 26 H 0.039 0.961 27 H 0.247 0.753 28 H 0.137 0.863 29 H -0.043 1.043 30 H 0.309 0.691 31 H 0.305 0.695 32 H 0.004 0.996 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.041 0.959 37 H 0.028 0.972 38 H 0.041 0.959 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.866 -1.559 -5.110 6.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.266 5.266 3 C -0.062 4.062 4 C -0.141 4.141 5 C 0.082 3.918 6 C -0.520 4.520 7 H 0.063 0.937 8 C -0.112 4.112 9 N -0.505 5.505 10 Si 0.707 3.293 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.214 1.214 14 C -0.057 4.057 15 N -0.334 5.334 16 C -0.044 4.044 17 C -0.170 4.170 18 C -0.190 4.190 19 C -0.049 4.049 20 H 0.036 0.964 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.154 0.846 29 H -0.026 1.026 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.023 0.977 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.059 0.941 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.919 -1.845 -4.688 6.383 hybrid contribution -0.229 0.748 0.675 1.034 sum -4.148 -1.097 -4.012 5.875 Atomic orbital electron populations 1.22281 0.89414 1.00955 0.99503 1.61979 1.05638 1.14447 1.44566 1.21998 0.96865 0.88321 0.99062 1.21695 0.93286 1.00063 0.99058 1.18188 0.91503 0.89547 0.92544 1.20746 1.10568 1.26774 0.93919 0.93700 1.24619 0.94305 0.94538 0.97723 1.69776 1.13034 1.40326 1.27355 0.86798 0.78092 0.78951 0.85446 1.20583 1.21689 1.21433 1.22528 0.96581 0.91161 0.95399 1.58450 1.07917 1.11805 1.55187 1.20622 0.92389 0.97867 0.93529 1.21771 1.00997 0.95057 0.99198 1.21876 0.99596 0.98416 0.99070 1.22031 0.96347 0.95417 0.91147 0.96409 0.92343 0.92476 0.93515 0.94317 0.92933 0.94231 0.94126 0.84607 1.02570 0.88112 0.88463 0.97663 0.91778 0.91315 0.92714 0.93963 0.95256 0.94059 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.59 60.07 0.58 1.00 16 2 N -0.54 -10.21 4.20 -242.96 -1.02 -11.23 16 3 C 0.07 1.27 5.26 -3.83 -0.02 1.25 16 4 C -0.10 -2.14 4.26 -26.65 -0.11 -2.26 16 5 C 0.08 1.87 0.11 -155.54 -0.02 1.85 16 6 C -0.48 -12.17 5.67 -34.44 -0.20 -12.36 16 7 H 0.04 1.20 6.25 -52.49 -0.33 0.87 16 8 C 0.09 2.28 3.46 -17.82 -0.06 2.22 16 9 N -0.87 -22.17 7.50 55.43 0.42 -21.75 16 10 Si 0.88 21.09 29.54 -169.99 -5.02 16.07 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 C 0.07 1.68 4.12 -3.83 -0.02 1.66 16 15 N -0.81 -17.76 8.28 -10.37 -0.09 -17.85 16 16 C -0.04 -0.91 0.32 -154.43 -0.05 -0.96 16 17 C -0.11 -2.50 6.87 37.16 0.26 -2.24 16 18 C -0.13 -2.60 7.62 37.16 0.28 -2.32 16 19 C 0.08 1.59 3.98 -3.84 -0.02 1.57 16 20 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 21 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 22 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 23 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 24 H 0.04 0.83 6.44 -51.93 -0.33 0.49 16 25 H 0.05 1.10 6.97 -51.93 -0.36 0.74 16 26 H 0.04 0.81 6.58 -51.93 -0.34 0.46 16 27 H 0.25 6.32 8.31 -40.82 -0.34 5.98 16 28 H 0.14 3.43 3.74 -51.93 -0.19 3.23 16 29 H -0.04 -0.98 6.78 -51.93 -0.35 -1.33 16 30 H 0.31 6.29 9.08 -39.29 -0.36 5.93 16 31 H 0.30 6.26 7.58 -39.29 -0.30 5.97 16 32 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.06 1.49 5.92 -51.93 -0.31 1.18 16 34 H 0.07 1.68 5.73 -51.93 -0.30 1.38 16 35 H 0.05 1.08 6.01 -51.93 -0.31 0.77 16 36 H 0.04 0.83 6.56 -51.93 -0.34 0.49 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.04 0.92 7.31 -51.93 -0.38 0.54 16 39 H 0.05 0.89 8.12 -51.93 -0.42 0.47 16 LS Contribution 272.24 15.07 4.10 4.10 Total: -1.00 -25.67 272.24 -7.27 -32.95 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.29 Total: 8.28 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 0.63 Total: -10.58 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.69 Total: -50.82 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -25.67 -7.27 -32.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260900567.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.414 kcal (2) G-P(sol) polarization free energy of solvation -25.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds