Wall clock time and date at job start Mon Mar 30 2020 03:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46850 * 110.99556 * 2 1 4 4 C 1.53042 * 109.52330 * 185.83938 * 3 2 1 5 5 C 1.53121 * 109.27739 * 300.82452 * 4 3 2 6 6 C 1.50695 * 109.52354 * 297.74667 * 5 4 3 7 7 H 1.08002 * 119.99846 * 24.10260 * 6 5 4 8 8 C 1.37874 * 119.99851 * 204.09487 * 6 5 4 9 9 N 1.31510 * 120.00051 * 4.67542 * 8 6 5 10 10 Si 1.86803 * 119.99748 * 184.66728 * 8 6 5 11 11 H 1.48501 * 109.47403 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47144 * 120.00496 * 10 8 6 13 13 H 1.48508 * 109.47002 * 240.00170 * 10 8 6 14 14 C 1.53002 * 109.57167 * 177.58990 * 5 4 3 15 15 N 1.46895 * 109.47168 * 66.84437 * 14 5 4 16 16 C 1.53121 * 109.15787 * 57.65442 * 5 4 3 17 17 C 1.53006 * 109.49758 * 182.40129 * 16 5 4 18 18 C 1.53000 * 109.53549 * 62.30598 * 16 5 4 19 19 C 1.46844 * 111.00418 * 124.21196 * 2 1 3 20 20 H 1.08993 * 109.47054 * 295.78112 * 1 2 3 21 21 H 1.09008 * 109.46397 * 175.78640 * 1 2 3 22 22 H 1.09002 * 109.47325 * 55.78919 * 1 2 3 23 23 H 1.08999 * 109.46760 * 305.86063 * 3 2 1 24 24 H 1.08998 * 109.45800 * 65.82688 * 3 2 1 25 25 H 1.08999 * 109.50366 * 180.88311 * 4 3 2 26 26 H 1.09001 * 109.53030 * 60.78660 * 4 3 2 27 27 H 0.97008 * 120.00020 * 179.97438 * 9 8 6 28 28 H 1.08999 * 109.47106 * 186.84807 * 14 5 4 29 29 H 1.09001 * 109.47002 * 306.84368 * 14 5 4 30 30 H 1.00901 * 110.99765 * 174.91587 * 15 14 5 31 31 H 1.00903 * 111.00388 * 298.87071 * 15 14 5 32 32 H 1.08998 * 109.46833 * 179.80249 * 17 16 5 33 33 H 1.08999 * 109.47035 * 299.80053 * 17 16 5 34 34 H 1.09002 * 109.47106 * 59.80908 * 17 16 5 35 35 H 1.08994 * 109.47314 * 300.17033 * 18 16 5 36 36 H 1.08993 * 109.47279 * 60.17690 * 18 16 5 37 37 H 1.08999 * 109.46654 * 180.17434 * 18 16 5 38 38 H 1.08997 * 109.46241 * 294.18372 * 19 2 1 39 39 H 1.09002 * 109.46120 * 54.15688 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3344 -0.1468 5 6 4.1188 0.5371 1.0143 6 6 3.8007 1.2262 2.3162 7 1 2.9446 1.8809 2.3855 8 6 4.6025 1.0206 3.4189 9 7 5.6956 0.2974 3.3114 10 14 4.1360 1.7694 5.0654 11 1 2.8702 2.5325 4.9215 12 1 3.9506 0.6881 6.0663 13 1 5.2163 2.6826 5.5177 14 6 5.6363 0.4451 0.8420 15 7 6.2281 1.7811 0.9928 16 6 3.5182 -0.8714 1.0206 17 6 4.0683 -1.6558 2.2136 18 6 3.8877 -1.5910 -0.2780 19 6 1.9954 -0.7708 1.1337 20 1 -0.3633 0.4469 0.9253 21 1 -0.3632 -1.0250 -0.0755 22 1 -0.3634 0.5778 -0.8499 23 1 1.5633 1.9259 -0.8329 24 1 1.7324 1.8608 0.9376 25 1 3.9098 2.3514 -0.1310 26 1 3.7819 0.8574 -1.0907 27 1 6.2599 0.1531 4.0871 28 1 6.0482 -0.2223 1.5990 29 1 5.8664 0.0556 -0.1497 30 1 7.2357 1.7354 0.9658 31 1 5.8759 2.4141 0.2903 32 1 3.6377 -2.6571 2.2197 33 1 5.1529 -1.7271 2.1326 34 1 3.8059 -1.1420 3.1384 35 1 3.4969 -1.0311 -1.1276 36 1 4.9724 -1.6624 -0.3579 37 1 3.4570 -2.5923 -0.2737 38 1 1.7325 -0.2710 2.0659 39 1 1.5637 -1.7716 1.1240 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260900567.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:10 Heat of formation + Delta-G solvation = 2.631535 kcal Electronic energy + Delta-G solvation = -17994.845883 eV Core-core repulsion = 15551.109451 eV Total energy + Delta-G solvation = -2443.736433 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.89007 -36.85483 -34.30192 -33.53273 -32.13625 -28.39187 -27.87685 -27.40962 -25.78128 -24.67944 -21.93134 -21.68618 -19.40659 -17.12404 -16.76020 -16.60504 -15.97402 -15.64441 -15.49545 -15.11335 -14.64342 -14.19641 -13.92402 -13.59031 -13.25090 -13.09350 -12.82925 -12.75625 -12.55251 -12.40075 -12.29178 -12.17769 -11.98360 -11.70445 -11.52394 -11.39775 -10.73313 -10.34347 -10.18161 -9.96697 -9.00742 -8.70049 -7.48790 -5.75926 1.42716 1.49646 1.53717 2.60892 3.26628 3.52463 4.21938 4.30868 4.36160 4.48560 4.59386 4.68867 4.73909 4.74819 4.87029 4.91773 5.00960 5.03749 5.09060 5.14604 5.21494 5.26704 5.36520 5.39707 5.49050 5.63276 5.68840 5.83545 5.91385 6.02496 6.11389 6.38743 6.44683 6.57720 6.69367 7.02408 7.28786 7.32665 7.87652 9.25935 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025255 B = 0.013433 C = 0.011888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.405535 B = 2083.898581 C = 2354.730561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.542 5.542 3 C 0.070 3.930 4 C -0.099 4.099 5 C 0.079 3.921 6 C -0.482 4.482 7 H 0.025 0.975 8 C 0.061 3.939 9 N -0.868 5.868 10 Si 0.912 3.088 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.294 1.294 14 C 0.080 3.920 15 N -0.819 5.819 16 C -0.047 4.047 17 C -0.102 4.102 18 C -0.121 4.121 19 C 0.084 3.916 20 H 0.012 0.988 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.014 0.986 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.242 0.758 28 H 0.116 0.884 29 H -0.039 1.039 30 H 0.318 0.682 31 H 0.314 0.686 32 H 0.023 0.977 33 H 0.049 0.951 34 H 0.040 0.960 35 H 0.056 0.944 36 H 0.036 0.964 37 H 0.044 0.956 38 H 0.013 0.987 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.732 -2.037 -6.427 8.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.266 5.266 3 C -0.058 4.058 4 C -0.137 4.137 5 C 0.079 3.921 6 C -0.520 4.520 7 H 0.043 0.957 8 C -0.138 4.138 9 N -0.508 5.508 10 Si 0.743 3.257 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.221 1.221 14 C -0.050 4.050 15 N -0.346 5.346 16 C -0.048 4.048 17 C -0.160 4.160 18 C -0.179 4.179 19 C -0.044 4.044 20 H 0.031 0.969 21 H 0.093 0.907 22 H 0.096 0.904 23 H 0.089 0.911 24 H 0.032 0.968 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.133 0.867 29 H -0.021 1.021 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.031 0.969 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.791 -2.322 -6.010 8.029 hybrid contribution 0.020 0.912 1.087 1.419 sum -4.771 -1.410 -4.922 6.999 Atomic orbital electron populations 1.22385 0.87185 1.02484 1.00147 1.62000 1.07669 1.13628 1.43348 1.21931 0.96154 0.88959 0.98787 1.21609 0.94216 0.99401 0.98461 1.18201 0.91552 0.90425 0.91947 1.20801 1.09567 1.26337 0.95303 0.95722 1.24943 0.94692 0.95207 0.98977 1.69920 1.13116 1.40672 1.27090 0.86274 0.77178 0.78178 0.84112 1.21291 1.21722 1.22142 1.22330 0.96732 0.91131 0.94800 1.58392 1.08713 1.11681 1.55776 1.20603 0.93090 0.97076 0.94050 1.21611 1.00125 0.95870 0.98386 1.21743 0.99339 0.98985 0.97797 1.21899 0.95771 0.96139 0.90546 0.96914 0.90652 0.90414 0.91055 0.96759 0.93538 0.93489 0.94691 0.86697 1.02102 0.87171 0.87499 0.95837 0.93249 0.94068 0.92519 0.94456 0.93726 0.96868 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.59 127.69 1.22 1.96 16 2 N -0.54 -19.07 4.20 -922.58 -3.87 -22.94 16 3 C 0.07 2.59 5.26 86.33 0.45 3.04 16 4 C -0.10 -3.96 4.26 30.65 0.13 -3.83 16 5 C 0.08 3.52 0.11 -52.85 -0.01 3.51 16 6 C -0.48 -24.39 5.67 25.60 0.15 -24.25 16 7 H 0.02 1.33 6.25 -2.91 -0.02 1.31 16 8 C 0.06 3.17 3.46 84.65 0.29 3.46 16 9 N -0.87 -44.70 7.50 21.45 0.16 -44.54 16 10 Si 0.91 43.66 29.54 68.60 2.03 45.69 16 11 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 13 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 14 C 0.08 3.62 4.12 86.30 0.36 3.97 16 15 N -0.82 -35.43 8.28 -186.72 -1.55 -36.97 16 16 C -0.05 -1.93 0.32 -52.13 -0.02 -1.95 16 17 C -0.10 -4.47 6.87 71.98 0.49 -3.97 16 18 C -0.12 -4.47 7.62 71.98 0.55 -3.92 16 19 C 0.08 3.29 3.98 86.32 0.34 3.63 16 20 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 21 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 22 H 0.08 1.89 8.09 -2.39 -0.02 1.87 16 23 H 0.07 2.30 8.09 -2.39 -0.02 2.28 16 24 H 0.01 0.60 6.44 -2.39 -0.02 0.59 16 25 H 0.05 1.89 6.97 -2.39 -0.02 1.87 16 26 H 0.05 1.80 6.58 -2.39 -0.02 1.79 16 27 H 0.24 12.46 8.31 -92.70 -0.77 11.69 16 28 H 0.12 5.78 3.74 -2.39 -0.01 5.77 16 29 H -0.04 -1.69 6.78 -2.39 -0.02 -1.71 16 30 H 0.32 12.68 9.08 -89.69 -0.81 11.87 16 31 H 0.31 12.58 7.58 -89.69 -0.68 11.90 16 32 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 2.28 5.92 -2.39 -0.01 2.26 16 34 H 0.04 2.00 5.73 -2.39 -0.01 1.99 16 35 H 0.06 2.06 6.01 -2.39 -0.01 2.04 16 36 H 0.04 1.39 6.56 -2.39 -0.02 1.37 16 37 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.01 0.58 7.31 -2.39 -0.02 0.56 16 39 H 0.06 2.21 8.12 -2.39 -0.02 2.19 16 Total: -1.00 -53.16 272.24 0.29 -52.87 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: -0.45 Total: 24.24 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 3.97 Total: -18.33 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -5.26 Total: -104.46 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -53.16 0.29 -52.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260900567.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.499 kcal (2) G-P(sol) polarization free energy of solvation -53.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds