Wall clock time and date at job start Mon Mar 30 2020 03:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46845 * 111.00195 * 2 1 4 4 C 1.53033 * 109.52408 * 174.16246 * 3 2 1 5 5 C 1.53123 * 109.28101 * 59.17433 * 4 3 2 6 6 C 1.50702 * 109.51800 * 62.25389 * 5 4 3 7 7 H 1.07998 * 120.00017 * 325.75315 * 6 5 4 8 8 C 1.37872 * 119.99458 * 145.76226 * 6 5 4 9 9 N 1.31511 * 120.00504 * 25.87225 * 8 6 5 10 10 Si 1.86813 * 119.99677 * 205.87356 * 8 6 5 11 11 H 1.48493 * 109.46924 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47065 * 119.99633 * 10 8 6 13 13 H 1.48497 * 109.46955 * 239.99809 * 10 8 6 14 14 C 1.52997 * 109.51911 * 182.37797 * 5 4 3 15 15 N 1.46901 * 109.47424 * 294.16622 * 14 5 4 16 16 C 1.53112 * 109.15898 * 302.34734 * 5 4 3 17 17 C 1.53008 * 109.50204 * 177.59539 * 16 5 4 18 18 C 1.53003 * 109.50539 * 297.71026 * 16 5 4 19 19 C 1.46850 * 110.99789 * 235.78504 * 2 1 3 20 20 H 1.09002 * 109.47148 * 56.04568 * 1 2 3 21 21 H 1.09000 * 109.47406 * 176.04730 * 1 2 3 22 22 H 1.09005 * 109.47320 * 296.05022 * 1 2 3 23 23 H 1.09007 * 109.46393 * 54.13853 * 3 2 1 24 24 H 1.09010 * 109.45825 * 294.17726 * 3 2 1 25 25 H 1.09000 * 109.50530 * 179.11992 * 4 3 2 26 26 H 1.09008 * 109.50140 * 299.23399 * 4 3 2 27 27 H 0.97005 * 120.00000 * 180.02562 * 9 8 6 28 28 H 1.08993 * 109.47546 * 54.17105 * 14 5 4 29 29 H 1.09003 * 109.46905 * 174.17255 * 14 5 4 30 30 H 1.00899 * 110.99495 * 56.04975 * 15 14 5 31 31 H 1.00902 * 111.00130 * 180.02562 * 15 14 5 32 32 H 1.08999 * 109.46874 * 59.99569 * 17 16 5 33 33 H 1.08998 * 109.47222 * 180.02562 * 17 16 5 34 34 H 1.08997 * 109.46539 * 299.99915 * 17 16 5 35 35 H 1.08999 * 109.46836 * 60.00407 * 18 16 5 36 36 H 1.08996 * 109.47287 * 179.97438 * 18 16 5 37 37 H 1.08996 * 109.47319 * 300.00600 * 18 16 5 38 38 H 1.08998 * 109.45723 * 65.82739 * 19 2 1 39 39 H 1.08997 * 109.45659 * 305.84921 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 0.1467 5 6 4.1188 0.5368 -1.0144 6 6 3.8007 1.2260 -2.3163 7 1 2.8622 1.7468 -2.4363 8 6 4.7077 1.1915 -3.3540 9 7 5.5693 0.2018 -3.4418 10 14 4.7128 2.5507 -4.6356 11 1 3.6524 3.5389 -4.3132 12 1 6.0355 3.2256 -4.6361 13 1 4.4541 1.9675 -5.9766 14 6 5.6362 0.4461 -0.8412 15 7 6.2246 1.7862 -0.9681 16 6 3.5181 -0.8716 -1.0207 17 6 4.0680 -1.6561 -2.2137 18 6 3.8876 -1.5904 0.2784 19 6 1.9952 -0.7709 -1.1337 20 1 -0.3633 0.5740 -0.8524 21 1 -0.3634 -1.0252 -0.0708 22 1 -0.3634 0.4513 0.9233 23 1 1.5634 1.9258 0.8329 24 1 1.7324 1.8608 -0.9377 25 1 3.9099 2.3511 0.1310 26 1 3.7813 0.8567 1.0907 27 1 6.2077 0.1778 -4.1717 28 1 5.8660 0.0403 0.1439 29 1 6.0511 -0.2069 -1.6091 30 1 5.8091 2.4273 -0.3090 31 1 7.2270 1.7530 -0.8580 32 1 5.1530 -1.7244 -2.1346 33 1 3.6398 -2.6584 -2.2180 34 1 3.8027 -1.1440 -3.1386 35 1 3.4938 -1.0317 1.1274 36 1 3.4593 -2.5927 0.2735 37 1 4.9723 -1.6587 0.3600 38 1 1.7324 -0.2710 -2.0659 39 1 1.5634 -1.7716 -1.1239 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260900569.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:13 Heat of formation + Delta-G solvation = 16.359736 kcal Electronic energy + Delta-G solvation = -17971.728370 eV Core-core repulsion = 15528.587237 eV Total energy + Delta-G solvation = -2443.141133 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.21591 -35.25364 -32.66241 -31.66541 -30.51800 -26.66516 -26.40146 -25.62700 -23.90445 -23.17772 -20.28038 -20.06560 -17.57168 -15.29204 -15.10296 -14.65165 -14.42260 -14.07174 -13.76226 -13.53567 -12.88709 -12.52898 -12.36951 -12.00060 -11.75890 -11.31816 -11.18055 -10.94943 -10.89510 -10.66268 -10.52311 -10.39286 -10.32036 -9.88774 -9.85452 -9.58135 -8.91141 -8.62718 -8.51674 -7.72230 -7.44267 -7.14338 -5.79164 -3.73247 3.45309 3.55192 3.59009 4.64570 4.75368 5.44345 5.68294 5.78906 5.88843 5.95651 6.11565 6.21001 6.23753 6.26085 6.37718 6.47895 6.51141 6.66609 6.74992 6.82614 6.90212 6.93570 7.04016 7.08715 7.16957 7.32638 7.40628 7.61354 7.69304 7.88073 7.92788 7.97676 8.23767 8.29528 8.52337 8.68350 8.82243 9.19140 9.87268 11.18511 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026992 B = 0.012741 C = 0.011713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.098326 B = 2197.188193 C = 2389.854068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.543 5.543 3 C 0.066 3.934 4 C -0.103 4.103 5 C 0.086 3.914 6 C -0.506 4.506 7 H 0.046 0.954 8 C 0.109 3.891 9 N -0.858 5.858 10 Si 0.873 3.127 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.298 1.298 14 C 0.069 3.931 15 N -0.820 5.820 16 C -0.044 4.044 17 C -0.105 4.105 18 C -0.134 4.134 19 C 0.078 3.922 20 H 0.017 0.983 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.046 0.954 24 H 0.039 0.961 25 H 0.052 0.948 26 H 0.039 0.961 27 H 0.251 0.749 28 H -0.030 1.030 29 H 0.124 0.876 30 H 0.314 0.686 31 H 0.310 0.690 32 H 0.061 0.939 33 H -0.001 1.001 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.028 0.972 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.464 -1.182 5.519 6.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.267 5.267 3 C -0.062 4.062 4 C -0.141 4.141 5 C 0.085 3.915 6 C -0.543 4.543 7 H 0.065 0.935 8 C -0.094 4.094 9 N -0.495 5.495 10 Si 0.703 3.297 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.226 1.226 14 C -0.060 4.060 15 N -0.346 5.346 16 C -0.045 4.045 17 C -0.162 4.162 18 C -0.191 4.191 19 C -0.049 4.049 20 H 0.036 0.964 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.062 0.938 28 H -0.012 1.012 29 H 0.141 0.859 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.080 0.920 33 H 0.018 0.982 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.458 -1.498 5.091 6.334 hybrid contribution 0.020 1.131 -0.402 1.201 sum -3.438 -0.366 4.689 5.826 Atomic orbital electron populations 1.22280 0.89431 1.00734 0.99700 1.61985 1.05633 1.14441 1.44647 1.21979 0.96743 0.88341 0.99114 1.21704 0.93492 0.99964 0.98957 1.18156 0.90788 0.89746 0.92812 1.20589 1.02919 1.33856 0.96935 0.93548 1.24459 0.95101 0.93659 0.96182 1.70034 1.21089 1.27756 1.30607 0.86917 0.77640 0.84408 0.80775 1.20671 1.21168 1.22576 1.22263 0.97202 0.90196 0.96372 1.58588 1.05998 1.11135 1.58919 1.20665 0.92386 0.97807 0.93624 1.21718 1.00709 0.94493 0.99326 1.21912 0.99449 0.98519 0.99253 1.22043 0.96409 0.95343 0.91107 0.96403 0.92360 0.92503 0.93516 0.94248 0.92957 0.94243 0.93842 1.01214 0.85918 0.87405 0.88021 0.92003 0.98247 0.90371 0.92815 0.95258 0.94119 0.94060 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.62 60.06 0.58 1.01 16 2 N -0.54 -10.22 4.19 -242.95 -1.02 -11.24 16 3 C 0.07 1.28 5.25 -3.84 -0.02 1.26 16 4 C -0.10 -2.12 4.25 -26.65 -0.11 -2.23 16 5 C 0.09 1.92 0.11 -155.54 -0.02 1.90 16 6 C -0.51 -12.75 5.48 -34.44 -0.19 -12.94 16 7 H 0.05 1.24 6.30 -52.49 -0.33 0.91 16 8 C 0.11 2.81 3.68 -17.82 -0.07 2.74 16 9 N -0.86 -21.98 7.66 55.43 0.42 -21.56 16 10 Si 0.87 21.30 29.61 -169.99 -5.03 16.27 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 14 C 0.07 1.56 4.23 -3.82 -0.02 1.54 16 15 N -0.82 -17.49 8.33 -10.37 -0.09 -17.57 16 16 C -0.04 -0.93 0.32 -154.42 -0.05 -0.98 16 17 C -0.10 -2.35 6.78 37.16 0.25 -2.10 16 18 C -0.13 -2.64 7.63 37.16 0.28 -2.35 16 19 C 0.08 1.60 3.98 -3.83 -0.02 1.58 16 20 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 21 H 0.06 0.84 8.02 -51.93 -0.42 0.42 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 24 H 0.04 0.84 6.43 -51.92 -0.33 0.51 16 25 H 0.05 1.07 6.82 -51.93 -0.35 0.72 16 26 H 0.04 0.79 6.58 -51.92 -0.34 0.45 16 27 H 0.25 6.41 8.31 -40.82 -0.34 6.07 16 28 H -0.03 -0.66 6.72 -51.93 -0.35 -1.01 16 29 H 0.12 3.06 3.99 -51.93 -0.21 2.85 16 30 H 0.31 6.29 7.34 -39.29 -0.29 6.00 16 31 H 0.31 6.00 9.08 -39.29 -0.36 5.65 16 32 H 0.06 1.45 5.88 -51.93 -0.31 1.15 16 33 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 16 34 H 0.08 1.95 5.86 -51.93 -0.30 1.65 16 35 H 0.05 1.05 6.01 -51.93 -0.31 0.74 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.04 0.80 6.53 -51.93 -0.34 0.46 16 38 H 0.04 0.93 7.28 -51.93 -0.38 0.55 16 39 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 LS Contribution 272.32 15.07 4.10 4.10 Total: -1.00 -25.68 272.32 -7.26 -32.95 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.28 Total: 7.62 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 0.63 Total: -10.57 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.68 Total: -50.37 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -25.68 -7.26 -32.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260900569.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.307 kcal (2) G-P(sol) polarization free energy of solvation -25.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds