Wall clock time and date at job start Mon Mar 30 2020 03:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46845 * 111.00195 * 2 1 4 4 C 1.53033 * 109.52408 * 174.16246 * 3 2 1 5 5 C 1.53123 * 109.28101 * 59.17433 * 4 3 2 6 6 C 1.50702 * 109.51800 * 62.25389 * 5 4 3 7 7 H 1.07998 * 120.00017 * 325.75315 * 6 5 4 8 8 C 1.37872 * 119.99458 * 145.76226 * 6 5 4 9 9 N 1.31511 * 120.00504 * 25.87225 * 8 6 5 10 10 Si 1.86813 * 119.99677 * 205.87356 * 8 6 5 11 11 H 1.48493 * 109.46924 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47065 * 119.99633 * 10 8 6 13 13 H 1.48497 * 109.46955 * 239.99809 * 10 8 6 14 14 C 1.52997 * 109.51911 * 182.37797 * 5 4 3 15 15 N 1.46901 * 109.47424 * 294.16622 * 14 5 4 16 16 C 1.53112 * 109.15898 * 302.34734 * 5 4 3 17 17 C 1.53008 * 109.50204 * 177.59539 * 16 5 4 18 18 C 1.53003 * 109.50539 * 297.71026 * 16 5 4 19 19 C 1.46850 * 110.99789 * 235.78504 * 2 1 3 20 20 H 1.09002 * 109.47148 * 56.04568 * 1 2 3 21 21 H 1.09000 * 109.47406 * 176.04730 * 1 2 3 22 22 H 1.09005 * 109.47320 * 296.05022 * 1 2 3 23 23 H 1.09007 * 109.46393 * 54.13853 * 3 2 1 24 24 H 1.09010 * 109.45825 * 294.17726 * 3 2 1 25 25 H 1.09000 * 109.50530 * 179.11992 * 4 3 2 26 26 H 1.09008 * 109.50140 * 299.23399 * 4 3 2 27 27 H 0.97005 * 120.00000 * 180.02562 * 9 8 6 28 28 H 1.08993 * 109.47546 * 54.17105 * 14 5 4 29 29 H 1.09003 * 109.46905 * 174.17255 * 14 5 4 30 30 H 1.00899 * 110.99495 * 56.04975 * 15 14 5 31 31 H 1.00902 * 111.00130 * 180.02562 * 15 14 5 32 32 H 1.08999 * 109.46874 * 59.99569 * 17 16 5 33 33 H 1.08998 * 109.47222 * 180.02562 * 17 16 5 34 34 H 1.08997 * 109.46539 * 299.99915 * 17 16 5 35 35 H 1.08999 * 109.46836 * 60.00407 * 18 16 5 36 36 H 1.08996 * 109.47287 * 179.97438 * 18 16 5 37 37 H 1.08996 * 109.47319 * 300.00600 * 18 16 5 38 38 H 1.08998 * 109.45723 * 65.82739 * 19 2 1 39 39 H 1.08997 * 109.45659 * 305.84921 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 0.1467 5 6 4.1188 0.5368 -1.0144 6 6 3.8007 1.2260 -2.3163 7 1 2.8622 1.7468 -2.4363 8 6 4.7077 1.1915 -3.3540 9 7 5.5693 0.2018 -3.4418 10 14 4.7128 2.5507 -4.6356 11 1 3.6524 3.5389 -4.3132 12 1 6.0355 3.2256 -4.6361 13 1 4.4541 1.9675 -5.9766 14 6 5.6362 0.4461 -0.8412 15 7 6.2246 1.7862 -0.9681 16 6 3.5181 -0.8716 -1.0207 17 6 4.0680 -1.6561 -2.2137 18 6 3.8876 -1.5904 0.2784 19 6 1.9952 -0.7709 -1.1337 20 1 -0.3633 0.5740 -0.8524 21 1 -0.3634 -1.0252 -0.0708 22 1 -0.3634 0.4513 0.9233 23 1 1.5634 1.9258 0.8329 24 1 1.7324 1.8608 -0.9377 25 1 3.9099 2.3511 0.1310 26 1 3.7813 0.8567 1.0907 27 1 6.2077 0.1778 -4.1717 28 1 5.8660 0.0403 0.1439 29 1 6.0511 -0.2069 -1.6091 30 1 5.8091 2.4273 -0.3090 31 1 7.2270 1.7530 -0.8580 32 1 5.1530 -1.7244 -2.1346 33 1 3.6398 -2.6584 -2.2180 34 1 3.8027 -1.1440 -3.1386 35 1 3.4938 -1.0317 1.1274 36 1 3.4593 -2.5927 0.2735 37 1 4.9723 -1.6587 0.3600 38 1 1.7324 -0.2710 -2.0659 39 1 1.5634 -1.7716 -1.1239 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260900569.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:12 Heat of formation + Delta-G solvation = -0.480654 kcal Electronic energy + Delta-G solvation = -17972.458624 eV Core-core repulsion = 15528.587237 eV Total energy + Delta-G solvation = -2443.871387 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.88084 -36.86727 -34.34946 -33.58347 -32.14768 -28.41223 -27.88867 -27.36045 -25.75521 -24.73423 -21.91550 -21.74496 -19.40107 -17.09332 -16.73371 -16.58504 -15.97926 -15.67252 -15.51553 -15.13240 -14.65319 -14.22064 -13.94791 -13.65877 -13.24556 -13.10887 -12.80297 -12.73001 -12.54933 -12.42568 -12.27108 -12.20313 -11.96685 -11.76040 -11.55242 -11.40823 -10.63020 -10.42683 -10.26369 -9.65569 -9.00257 -8.85270 -7.76566 -5.72156 1.45860 1.54490 1.58512 2.65464 3.27443 3.46681 4.21007 4.29098 4.34022 4.47540 4.57358 4.68409 4.74252 4.76788 4.86022 4.91399 4.98976 5.03593 5.09950 5.15235 5.22848 5.29422 5.36906 5.40885 5.51333 5.57239 5.70497 5.86849 5.94592 6.04099 6.24711 6.35818 6.44677 6.51342 6.68827 6.92417 7.14037 7.27591 7.87078 9.17475 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026992 B = 0.012741 C = 0.011713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.098326 B = 2197.188193 C = 2389.854068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.542 5.542 3 C 0.070 3.930 4 C -0.099 4.099 5 C 0.082 3.918 6 C -0.505 4.505 7 H 0.025 0.975 8 C 0.084 3.916 9 N -0.861 5.861 10 Si 0.906 3.094 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.302 1.302 14 C 0.077 3.923 15 N -0.831 5.831 16 C -0.047 4.047 17 C -0.093 4.093 18 C -0.123 4.123 19 C 0.085 3.915 20 H 0.013 0.987 21 H 0.073 0.927 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.014 0.986 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.247 0.753 28 H -0.022 1.022 29 H 0.100 0.900 30 H 0.323 0.677 31 H 0.321 0.679 32 H 0.046 0.954 33 H 0.015 0.985 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.042 0.958 37 H 0.036 0.964 38 H 0.012 0.988 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.177 -1.548 7.052 8.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.267 5.267 3 C -0.058 4.058 4 C -0.137 4.137 5 C 0.081 3.919 6 C -0.542 4.542 7 H 0.044 0.956 8 C -0.118 4.118 9 N -0.498 5.498 10 Si 0.736 3.264 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.230 1.230 14 C -0.053 4.053 15 N -0.359 5.359 16 C -0.049 4.049 17 C -0.150 4.150 18 C -0.180 4.180 19 C -0.043 4.043 20 H 0.031 0.969 21 H 0.091 0.909 22 H 0.097 0.903 23 H 0.090 0.910 24 H 0.032 0.968 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.057 0.943 28 H -0.004 1.004 29 H 0.118 0.882 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.065 0.935 33 H 0.034 0.966 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.030 0.970 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.175 -1.859 6.628 8.051 hybrid contribution 0.215 1.255 -0.891 1.554 sum -3.960 -0.604 5.738 6.998 Atomic orbital electron populations 1.22384 0.87241 1.01957 1.00622 1.62009 1.07637 1.13676 1.43342 1.21924 0.96184 0.88910 0.98812 1.21621 0.94260 0.99465 0.98360 1.18170 0.91041 0.90505 0.92144 1.20646 1.01848 1.33493 0.98196 0.95645 1.24739 0.95598 0.94446 0.97038 1.70140 1.21245 1.27864 1.30588 0.86427 0.76781 0.83277 0.79876 1.21470 1.21756 1.23013 1.22058 0.97118 0.90311 0.95837 1.58507 1.06971 1.10874 1.59503 1.20635 0.93026 0.97134 0.94068 1.21528 0.99825 0.95189 0.98501 1.21775 0.99291 0.99005 0.97958 1.21900 0.95897 0.95986 0.90482 0.96882 0.90854 0.90320 0.91036 0.96759 0.93290 0.93338 0.94310 1.00443 0.88249 0.86466 0.86806 0.93457 0.96631 0.93419 0.92503 0.93892 0.94454 0.97015 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.62 127.69 1.23 1.97 16 2 N -0.54 -19.08 4.19 -922.57 -3.87 -22.95 16 3 C 0.07 2.58 5.25 86.32 0.45 3.03 16 4 C -0.10 -3.90 4.25 30.65 0.13 -3.77 16 5 C 0.08 3.60 0.11 -52.85 -0.01 3.60 16 6 C -0.50 -25.51 5.48 25.60 0.14 -25.37 16 7 H 0.03 1.38 6.30 -2.91 -0.02 1.36 16 8 C 0.08 4.33 3.68 84.65 0.31 4.64 16 9 N -0.86 -44.43 7.66 21.44 0.16 -44.27 16 10 Si 0.91 44.01 29.61 68.60 2.03 46.04 16 11 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 12 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 13 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 14 C 0.08 3.38 4.23 86.30 0.37 3.75 16 15 N -0.83 -34.62 8.33 -186.72 -1.56 -36.18 16 16 C -0.05 -1.95 0.32 -52.13 -0.02 -1.97 16 17 C -0.09 -4.11 6.78 71.98 0.49 -3.63 16 18 C -0.12 -4.52 7.63 71.98 0.55 -3.97 16 19 C 0.09 3.35 3.98 86.33 0.34 3.69 16 20 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 21 H 0.07 1.87 8.02 -2.39 -0.02 1.85 16 22 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 23 H 0.07 2.29 8.12 -2.38 -0.02 2.27 16 24 H 0.01 0.60 6.43 -2.38 -0.02 0.59 16 25 H 0.05 1.93 6.82 -2.39 -0.02 1.92 16 26 H 0.05 1.82 6.58 -2.38 -0.02 1.80 16 27 H 0.25 12.69 8.31 -92.70 -0.77 11.92 16 28 H -0.02 -0.94 6.72 -2.39 -0.02 -0.95 16 29 H 0.10 4.93 3.99 -2.39 -0.01 4.92 16 30 H 0.32 12.50 7.34 -89.69 -0.66 11.84 16 31 H 0.32 12.08 9.08 -89.69 -0.81 11.27 16 32 H 0.05 2.21 5.88 -2.39 -0.01 2.19 16 33 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.05 2.39 5.86 -2.39 -0.01 2.38 16 35 H 0.06 2.05 6.01 -2.39 -0.01 2.03 16 36 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.04 1.38 6.53 -2.39 -0.02 1.36 16 38 H 0.01 0.52 7.28 -2.39 -0.02 0.50 16 39 H 0.06 2.19 8.04 -2.39 -0.02 2.17 16 Total: -1.00 -53.33 272.32 0.33 -53.00 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -0.42 Total: 22.38 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 3.99 Total: -18.03 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -5.26 Total: -103.40 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -53.33 0.33 -53.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260900569.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.517 kcal (2) G-P(sol) polarization free energy of solvation -53.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds