Wall clock time and date at job start Mon Mar 30 2020 03:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47371 * 2 1 4 4 C 1.52995 * 109.47254 * 239.99749 * 2 1 3 5 5 C 1.53004 * 109.47221 * 295.00378 * 4 2 1 6 6 H 1.08996 * 109.46850 * 54.99946 * 5 4 2 7 7 C 1.50703 * 109.47173 * 174.99571 * 5 4 2 8 8 H 1.07998 * 119.99447 * 54.86304 * 7 5 4 9 9 C 1.37876 * 120.00164 * 234.86344 * 7 5 4 10 10 N 1.31515 * 119.99498 * 5.72021 * 9 7 5 11 11 Si 1.86794 * 120.00080 * 185.71761 * 9 7 5 12 12 H 1.48507 * 109.46879 * 60.00141 * 11 9 7 13 13 H 1.48494 * 109.47127 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47375 * 300.00314 * 11 9 7 15 15 N 1.46901 * 109.47101 * 294.99779 * 5 4 2 16 16 C 1.47848 * 110.99824 * 297.41498 * 15 5 4 17 17 C 1.54910 * 104.79146 * 213.63519 * 16 15 5 18 18 C 1.55142 * 101.65458 * 37.07033 * 17 16 15 19 19 H 1.08993 * 110.70846 * 82.72714 * 18 17 16 20 20 N 1.46903 * 110.70565 * 205.96546 * 18 17 16 21 21 C 1.47439 * 111.00156 * 176.56694 * 15 5 4 22 22 H 1.09004 * 109.46874 * 300.00212 * 1 2 3 23 23 H 1.08992 * 109.47067 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46947 * 59.99841 * 1 2 3 25 25 H 1.09007 * 109.47031 * 119.99692 * 2 1 3 26 26 H 1.09004 * 109.47295 * 60.00046 * 3 2 1 27 27 H 1.08999 * 109.47154 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47215 * 299.99995 * 3 2 1 29 29 H 1.09000 * 109.46719 * 55.00139 * 4 2 1 30 30 H 1.08999 * 109.47651 * 174.99877 * 4 2 1 31 31 H 0.97005 * 119.99199 * 174.99468 * 10 9 7 32 32 H 1.09001 * 110.36949 * 332.45787 * 16 15 5 33 33 H 1.08996 * 110.37562 * 94.80903 * 16 15 5 34 34 H 1.08996 * 110.98944 * 278.97907 * 17 16 15 35 35 H 1.08996 * 110.98819 * 155.15618 * 17 16 15 36 36 H 1.00894 * 110.99739 * 293.59558 * 20 18 17 37 37 H 1.00897 * 111.00081 * 57.55065 * 20 18 17 38 38 H 1.08998 * 109.89224 * 242.66857 * 21 15 5 39 39 H 1.09000 * 109.88511 * 3.69151 * 21 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6352 -2.1955 -1.1879 6 1 0.5563 -2.2706 -1.0527 7 6 2.0293 -2.8785 -2.4722 8 1 3.0522 -2.8337 -2.8157 9 6 1.0839 -3.5604 -3.2086 10 7 -0.1812 -3.5213 -2.8517 11 14 1.6002 -4.5397 -4.7131 12 1 2.5686 -5.5913 -4.3109 13 1 0.4051 -5.1745 -5.3245 14 1 2.2373 -3.6315 -5.7003 15 7 2.3165 -2.8439 -0.0594 16 6 3.7837 -2.8157 -0.2394 17 6 4.2860 -4.1344 0.3997 18 6 3.1563 -5.1229 0.0076 19 1 3.3072 -5.4988 -1.0043 20 7 3.0790 -6.2311 0.9688 21 6 1.8875 -4.2475 0.0810 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 1.6768 1.9564 0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6054 -0.2617 -2.1369 30 1 3.1263 -0.6444 -1.2951 31 1 -0.8556 -3.9400 -3.4093 32 1 4.0355 -2.7879 -1.2995 33 1 4.2128 -1.9566 0.2763 34 1 4.3627 -4.0389 1.4828 35 1 5.2390 -4.4394 -0.0324 36 1 3.9066 -6.8064 0.9245 37 1 2.9270 -5.8876 1.9052 38 1 1.3937 -4.3900 1.0421 39 1 1.2060 -4.5096 -0.7283 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261042377.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:17 Heat of formation + Delta-G solvation = -15.338584 kcal Electronic energy + Delta-G solvation = -17034.996271 eV Core-core repulsion = 14590.480595 eV Total energy + Delta-G solvation = -2444.515676 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.51115 -35.81389 -33.46427 -32.13971 -29.54899 -27.94162 -26.49806 -25.61376 -24.92549 -21.67099 -20.16886 -19.65709 -18.38190 -16.39556 -15.95300 -15.06003 -14.46190 -14.13197 -14.09826 -13.42363 -12.86761 -12.79749 -12.43318 -12.06192 -11.86113 -11.70080 -11.54881 -11.12597 -11.04744 -10.91528 -10.69245 -10.43383 -10.27975 -10.16729 -10.07073 -9.82519 -9.61239 -9.28942 -8.82599 -8.52611 -8.20648 -6.97778 -6.01647 -4.13743 3.26629 3.32942 3.34994 4.37975 4.94361 5.13591 5.37139 5.47270 5.67260 5.71891 5.73057 5.78502 5.87433 6.20598 6.22139 6.25289 6.38991 6.39611 6.46427 6.51794 6.65214 6.77126 6.84070 6.86834 6.89361 6.99399 7.06856 7.25572 7.29728 7.43222 7.57501 7.78553 7.81432 7.86697 8.26309 8.32705 8.64052 9.04525 9.53291 10.98730 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.013118 C = 0.008755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.622357 B = 2134.017099 C = 3197.506506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.091 4.091 5 C 0.180 3.820 6 H 0.086 0.914 7 C -0.541 4.541 8 H 0.051 0.949 9 C 0.077 3.923 10 N -0.887 5.887 11 Si 0.882 3.118 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.278 1.278 15 N -0.526 5.526 16 C 0.049 3.951 17 C -0.164 4.164 18 C 0.075 3.925 19 H 0.083 0.917 20 N -0.841 5.841 21 C 0.064 3.936 22 H 0.035 0.965 23 H 0.064 0.936 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.264 0.736 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.331 0.669 37 H 0.336 0.664 38 H 0.050 0.950 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.135 1.761 5.919 8.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.130 4.130 5 C 0.075 3.925 6 H 0.104 0.896 7 C -0.580 4.580 8 H 0.069 0.931 9 C -0.126 4.126 10 N -0.525 5.525 11 Si 0.710 3.290 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.204 1.204 15 N -0.251 5.251 16 C -0.080 4.080 17 C -0.204 4.204 18 C -0.037 4.037 19 H 0.101 0.899 20 N -0.368 5.368 21 C -0.065 4.065 22 H 0.054 0.946 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.068 0.932 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.138 1.696 5.924 7.422 hybrid contribution 1.423 -0.518 -1.344 2.025 sum 5.561 1.177 4.580 7.300 Atomic orbital electron populations 1.21786 0.96072 1.02214 0.99535 1.21103 0.95367 0.94162 1.00535 1.21873 1.00147 0.97778 1.00354 1.21679 0.98565 0.97573 0.95169 1.19825 0.97438 0.88723 0.86560 0.89573 1.21520 0.95294 1.32533 1.08657 0.93067 1.24945 0.95040 0.95543 0.97095 1.69847 1.00016 1.44704 1.37897 0.86824 0.78148 0.80672 0.83395 1.20231 1.21211 1.20356 1.64121 1.03167 1.13724 1.44090 1.22745 0.90900 0.94770 0.99538 1.23471 0.98565 0.98476 0.99863 1.22726 0.95548 0.89629 0.95786 0.89878 1.58835 1.44417 1.23642 1.09948 1.22467 0.95650 0.87414 1.00975 0.94612 0.91668 0.93732 0.90872 0.93982 0.93639 0.93517 0.93136 0.94350 0.92615 0.92448 0.92886 0.92258 0.92658 0.85728 0.85181 0.93187 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.96 37.16 0.33 -2.20 16 2 C -0.09 -1.71 2.86 -90.62 -0.26 -1.97 16 3 C -0.14 -2.25 9.19 37.16 0.34 -1.90 16 4 C -0.09 -1.94 4.05 -26.73 -0.11 -2.05 16 5 C 0.18 4.26 1.79 -68.86 -0.12 4.14 16 6 H 0.09 2.30 5.12 -51.93 -0.27 2.03 16 7 C -0.54 -14.01 6.58 -34.44 -0.23 -14.24 16 8 H 0.05 1.35 6.45 -52.49 -0.34 1.01 16 9 C 0.08 2.07 4.81 -17.82 -0.09 1.98 16 10 N -0.89 -24.63 12.55 55.43 0.70 -23.94 16 11 Si 0.88 20.97 29.54 -169.99 -5.02 15.94 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 N -0.53 -11.25 4.55 -224.67 -1.02 -12.27 16 16 C 0.05 0.96 5.16 -2.29 -0.01 0.94 16 17 C -0.16 -2.75 6.74 -24.59 -0.17 -2.92 16 18 C 0.08 1.40 4.10 -65.89 -0.27 1.13 16 19 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 20 N -0.84 -13.08 9.33 -3.12 -0.03 -13.11 16 21 C 0.06 1.37 6.16 -2.84 -0.02 1.35 16 22 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.06 1.33 6.46 -51.93 -0.34 1.00 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 1.40 7.62 -51.93 -0.40 1.00 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.04 0.80 7.06 -51.93 -0.37 0.43 16 31 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 32 H 0.06 1.23 5.71 -51.93 -0.30 0.94 16 33 H 0.05 0.98 8.10 -51.93 -0.42 0.56 16 34 H 0.06 0.93 8.11 -51.93 -0.42 0.50 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.33 4.39 9.08 -39.30 -0.36 4.03 16 37 H 0.34 4.75 8.85 -39.29 -0.35 4.41 16 38 H 0.05 1.04 7.92 -51.93 -0.41 0.63 16 39 H 0.08 2.04 6.42 -51.93 -0.33 1.70 16 LS Contribution 298.05 15.07 4.49 4.49 Total: -1.00 -26.43 298.05 -8.29 -34.72 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.81 Total: 9.90 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -0.59 Total: -15.73 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -0.36 Total: -49.32 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.43 -8.29 -34.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042377.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.378 kcal (2) G-P(sol) polarization free energy of solvation -26.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds