Wall clock time and date at job start Mon Mar 30 2020 03:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47122 * 2 1 4 4 C 1.53002 * 109.46924 * 119.99578 * 2 1 3 5 5 C 1.52997 * 109.47214 * 171.00744 * 4 2 1 6 6 H 1.09004 * 109.47395 * 33.36748 * 5 4 2 7 7 C 1.50697 * 109.47014 * 273.36512 * 5 4 2 8 8 H 1.07999 * 120.00512 * 263.57947 * 7 5 4 9 9 C 1.37887 * 119.99729 * 83.58057 * 7 5 4 10 10 N 1.31514 * 120.00072 * 4.03684 * 9 7 5 11 11 Si 1.86797 * 119.99752 * 184.03598 * 9 7 5 12 12 H 1.48500 * 109.47125 * 90.00010 * 11 9 7 13 13 H 1.48500 * 109.47023 * 210.00149 * 11 9 7 14 14 H 1.48502 * 109.47281 * 329.99751 * 11 9 7 15 15 N 1.46902 * 109.47355 * 153.36638 * 5 4 2 16 16 C 1.48564 * 110.99840 * 50.97320 * 15 5 4 17 17 C 1.54380 * 104.59337 * 200.96370 * 16 15 5 18 18 C 1.54265 * 105.06337 * 23.84663 * 17 16 15 19 19 H 1.09001 * 110.32119 * 118.89582 * 18 17 16 20 20 N 1.46896 * 110.32831 * 241.00473 * 18 17 16 21 21 C 1.48562 * 110.99844 * 295.55295 * 15 5 4 22 22 H 1.09003 * 109.47663 * 300.00273 * 1 2 3 23 23 H 1.09002 * 109.47031 * 60.00767 * 1 2 3 24 24 H 1.09003 * 109.47425 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47336 * 239.99276 * 2 1 3 26 26 H 1.08995 * 109.47183 * 174.67893 * 3 2 1 27 27 H 1.09005 * 109.46882 * 294.68112 * 3 2 1 28 28 H 1.09000 * 109.47122 * 54.67618 * 3 2 1 29 29 H 1.09003 * 109.47215 * 51.00269 * 4 2 1 30 30 H 1.09005 * 109.46880 * 291.00607 * 4 2 1 31 31 H 0.96994 * 119.99936 * 179.97438 * 10 9 7 32 32 H 1.08994 * 110.41255 * 82.18114 * 16 15 5 33 33 H 1.09004 * 110.40889 * 319.73466 * 16 15 5 34 34 H 1.09005 * 110.32094 * 264.95740 * 17 16 15 35 35 H 1.08999 * 110.32840 * 142.74804 * 17 16 15 36 36 H 1.00904 * 111.00022 * 297.17527 * 20 18 17 37 37 H 1.00905 * 110.99929 * 61.12231 * 20 18 17 38 38 H 1.08995 * 110.41152 * 40.26104 * 21 15 5 39 39 H 1.08998 * 110.41424 * 277.81705 * 21 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5532 -0.9194 1.1418 6 1 3.9926 -0.0785 0.6052 7 6 3.8406 -2.1969 0.3958 8 1 4.0418 -3.1071 0.9411 9 6 3.8468 -2.2035 -0.9830 10 7 3.6807 -1.0804 -1.6468 11 14 4.0912 -3.8078 -1.9081 12 1 2.7714 -4.4408 -2.1585 13 1 4.7630 -3.5346 -3.2040 14 1 4.9335 -4.7235 -1.0973 15 7 4.1338 -0.9978 2.4889 16 6 3.4099 -1.9910 3.3236 17 6 3.7381 -1.5899 4.7778 18 6 4.1019 -0.0924 4.7083 19 1 3.4103 0.4937 5.3134 20 7 5.4824 0.1190 5.1637 21 6 3.9628 0.2853 3.2178 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8898 26 1 3.1257 1.4440 0.0953 27 1 1.7565 1.9281 -0.9338 28 1 1.6009 1.9831 0.8385 29 1 1.5513 -1.6919 1.3334 30 1 1.8137 -0.1229 2.1320 31 1 3.6855 -1.0851 -2.6167 32 1 3.7719 -2.9979 3.1161 33 1 2.3365 -1.9275 3.1448 34 1 4.5845 -2.1683 5.1482 35 1 2.8680 -1.7388 5.4172 36 1 5.5890 -0.1481 6.1309 37 1 6.1366 -0.3772 4.5773 38 1 2.9761 0.7050 3.0225 39 1 4.7412 0.9923 2.9306 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261042379.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:20 Heat of formation + Delta-G solvation = -5.676418 kcal Electronic energy + Delta-G solvation = -17038.525191 eV Core-core repulsion = 14594.428499 eV Total energy + Delta-G solvation = -2444.096693 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.84383 -35.85034 -33.20172 -32.23833 -29.67198 -27.90266 -26.34776 -25.94365 -24.89967 -22.03239 -19.98852 -19.63834 -18.56515 -16.32216 -15.90015 -15.13141 -14.56792 -14.08185 -14.01074 -13.51191 -13.27822 -12.83155 -12.35771 -12.13340 -11.78004 -11.74106 -11.42237 -11.29973 -10.90188 -10.85816 -10.67193 -10.61122 -10.47352 -10.33487 -9.90281 -9.69556 -9.64149 -9.14191 -8.83330 -8.39990 -8.25290 -7.19985 -6.00274 -4.00945 3.30448 3.37914 3.41220 4.42211 4.86500 5.01913 5.20896 5.26345 5.39438 5.66295 5.87758 5.96431 5.99095 6.05551 6.08743 6.15832 6.34927 6.39694 6.45733 6.51718 6.60152 6.62186 6.66908 6.70305 6.85867 6.98338 7.00117 7.26398 7.40985 7.45517 7.51723 7.73964 7.75514 8.05669 8.10610 8.34823 8.58101 9.03905 9.59616 11.05544 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022283 B = 0.010415 C = 0.008187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.266411 B = 2687.697557 C = 3419.392101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C -0.125 4.125 4 C -0.123 4.123 5 C 0.192 3.808 6 H 0.069 0.931 7 C -0.490 4.490 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.886 5.886 11 Si 0.891 3.109 12 H -0.283 1.283 13 H -0.287 1.287 14 H -0.276 1.276 15 N -0.500 5.500 16 C 0.038 3.962 17 C -0.161 4.161 18 C 0.088 3.912 19 H 0.073 0.927 20 N -0.840 5.840 21 C 0.028 3.972 22 H 0.034 0.966 23 H 0.039 0.961 24 H 0.042 0.958 25 H 0.129 0.871 26 H 0.059 0.941 27 H 0.035 0.965 28 H 0.024 0.976 29 H 0.043 0.957 30 H 0.022 0.978 31 H 0.260 0.740 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.331 0.669 37 H 0.348 0.652 38 H 0.046 0.954 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.279 1.475 8.010 8.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 C -0.182 4.182 4 C -0.162 4.162 5 C 0.085 3.915 6 H 0.087 0.913 7 C -0.528 4.528 8 H 0.074 0.926 9 C -0.139 4.139 10 N -0.526 5.526 11 Si 0.720 3.280 12 H -0.209 1.209 13 H -0.213 1.213 14 H -0.201 1.201 15 N -0.224 5.224 16 C -0.090 4.090 17 C -0.201 4.201 18 C -0.025 4.025 19 H 0.092 0.908 20 N -0.369 5.369 21 C -0.101 4.101 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.146 0.854 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.142 0.858 37 H 0.162 0.838 38 H 0.064 0.936 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.826 2.179 7.570 8.086 hybrid contribution -0.944 -1.722 -0.313 1.989 sum -2.771 0.457 7.257 7.781 Atomic orbital electron populations 1.21897 0.98595 1.00045 0.99458 1.21438 0.91974 0.96179 1.03025 1.21649 1.01548 0.96561 0.98467 1.22352 1.00934 0.97701 0.95208 1.19751 0.88250 0.99238 0.84255 0.91333 1.21028 1.46557 0.94538 0.90718 0.92604 1.24883 0.95265 0.96099 0.97626 1.69780 1.50458 1.25017 1.07313 0.86606 0.78089 0.84059 0.79276 1.20911 1.21324 1.20067 1.65841 1.51181 1.02070 1.03265 1.22921 0.97345 0.98160 0.90586 1.23232 1.00819 0.97751 0.98292 1.22185 0.89981 0.93613 0.96689 0.90838 1.58925 1.05222 1.65973 1.06784 1.23210 1.00346 0.95010 0.91512 0.94711 0.94168 0.93876 0.85408 0.92182 0.94553 0.95664 0.93776 0.95978 0.92982 0.91063 0.93855 0.92024 0.92397 0.85761 0.83807 0.93615 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.18 37.16 0.34 -2.31 16 2 C -0.11 -2.32 2.70 -90.62 -0.24 -2.57 16 3 C -0.13 -2.53 9.09 37.16 0.34 -2.19 16 4 C -0.12 -2.69 2.72 -26.73 -0.07 -2.77 16 5 C 0.19 4.58 1.81 -68.87 -0.12 4.45 16 6 H 0.07 1.83 5.53 -51.93 -0.29 1.55 16 7 C -0.49 -12.93 8.04 -34.44 -0.28 -13.21 16 8 H 0.06 1.50 7.04 -52.49 -0.37 1.13 16 9 C 0.06 1.64 5.13 -17.82 -0.09 1.54 16 10 N -0.89 -23.78 10.20 55.43 0.57 -23.22 16 11 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 N -0.50 -10.54 5.36 -223.40 -1.20 -11.74 16 16 C 0.04 0.73 5.69 -2.18 -0.01 0.72 16 17 C -0.16 -2.44 6.77 -25.35 -0.17 -2.61 16 18 C 0.09 1.34 4.19 -66.33 -0.28 1.06 16 19 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 20 N -0.84 -11.69 9.17 -3.49 -0.03 -11.72 16 21 C 0.03 0.52 5.95 -2.18 -0.01 0.50 16 22 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.13 3.19 4.84 -51.93 -0.25 2.94 16 26 H 0.06 1.32 6.31 -51.93 -0.33 0.99 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.04 1.01 7.25 -51.93 -0.38 0.64 16 30 H 0.02 0.46 5.50 -51.93 -0.29 0.17 16 31 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.07 1.41 7.55 -51.93 -0.39 1.02 16 33 H 0.04 0.84 5.82 -51.93 -0.30 0.54 16 34 H 0.06 0.88 7.95 -51.93 -0.41 0.47 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.33 3.80 9.07 -39.29 -0.36 3.44 16 37 H 0.35 5.11 8.99 -39.29 -0.35 4.76 16 38 H 0.05 0.86 5.84 -51.93 -0.30 0.56 16 39 H 0.08 1.50 8.06 -51.93 -0.42 1.09 16 LS Contribution 291.91 15.07 4.40 4.40 Total: -1.00 -26.16 291.91 -8.42 -34.58 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -6.53 Total: 9.14 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -0.61 Total: -17.38 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.66 Total: -46.67 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.16 -8.42 -34.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042379.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.908 kcal (2) G-P(sol) polarization free energy of solvation -26.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds