Wall clock time and date at job start Mon Mar 30 2020 03:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46958 * 2 1 4 4 C 1.52999 * 109.47003 * 239.99769 * 2 1 3 5 5 C 1.52996 * 109.47380 * 294.63427 * 4 2 1 6 6 H 1.09004 * 109.47151 * 185.90546 * 5 4 2 7 7 C 1.50696 * 109.47287 * 305.90783 * 5 4 2 8 8 H 1.07998 * 120.00422 * 119.99872 * 7 5 4 9 9 C 1.37882 * 119.99889 * 299.99734 * 7 5 4 10 10 N 1.31523 * 119.99753 * 0.02562 * 9 7 5 11 11 Si 1.86795 * 120.00129 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47103 * 60.00315 * 11 9 7 13 13 H 1.48496 * 109.47290 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47230 * 300.00547 * 11 9 7 15 15 N 1.46901 * 109.47055 * 65.91104 * 5 4 2 16 16 C 1.48532 * 111.00346 * 63.33887 * 15 5 4 17 17 C 1.54943 * 103.22439 * 159.72346 * 16 15 5 18 18 C 1.54595 * 102.92176 * 322.58533 * 17 16 15 19 19 H 1.09007 * 110.39137 * 263.00365 * 18 17 16 20 20 N 1.46894 * 110.30809 * 140.87954 * 18 17 16 21 21 C 1.47907 * 110.99812 * 180.73902 * 15 5 4 22 22 H 1.08996 * 109.47473 * 68.09167 * 1 2 3 23 23 H 1.09007 * 109.47005 * 188.08398 * 1 2 3 24 24 H 1.08998 * 109.47515 * 308.08387 * 1 2 3 25 25 H 1.08997 * 109.47337 * 120.00250 * 2 1 3 26 26 H 1.08998 * 109.46973 * 59.99866 * 3 2 1 27 27 H 1.09003 * 109.46766 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47094 * 299.99771 * 3 2 1 29 29 H 1.09005 * 109.47220 * 54.63475 * 4 2 1 30 30 H 1.09004 * 109.46979 * 174.62989 * 4 2 1 31 31 H 0.96993 * 119.99363 * 179.97438 * 10 9 7 32 32 H 1.08995 * 110.66521 * 278.15594 * 16 15 5 33 33 H 1.08998 * 110.66299 * 41.28829 * 16 15 5 34 34 H 1.08999 * 110.71730 * 204.22543 * 17 16 15 35 35 H 1.08992 * 110.87719 * 81.01970 * 17 16 15 36 36 H 1.00901 * 111.00396 * 64.28051 * 20 18 17 37 37 H 1.00904 * 110.99930 * 188.23934 * 20 18 17 38 38 H 1.09002 * 109.91724 * 333.50221 * 21 15 5 39 39 H 1.09002 * 109.91819 * 94.60247 * 21 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6431 -2.1974 -1.1836 6 1 2.0946 -2.7326 -2.0190 7 6 2.1280 -2.7908 0.1140 8 1 1.4207 -3.2131 0.8124 9 6 3.4747 -2.7945 0.4097 10 7 4.3361 -2.2798 -0.4406 11 14 4.0758 -3.5293 2.0184 12 1 3.6905 -4.9621 2.0827 13 1 5.5539 -3.4099 2.0955 14 1 3.4607 -2.7998 3.1563 15 7 0.1808 -2.3152 -1.2597 16 6 -0.3267 -1.8126 -2.5620 17 6 -1.7216 -2.4767 -2.6790 18 6 -1.4886 -3.8796 -2.0727 19 1 -1.3044 -4.6086 -2.8619 20 7 -2.6470 -4.2850 -1.2655 21 6 -0.2417 -3.7304 -1.1813 22 1 -0.3634 0.3834 -0.9534 23 1 -0.3633 -1.0175 0.1445 24 1 -0.3634 0.6339 0.8088 25 1 1.8934 -0.5138 0.8899 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6003 -0.2660 -2.1367 30 1 3.1257 -0.6388 -1.2986 31 1 5.2834 -2.2821 -0.2324 32 1 -0.4178 -0.7266 -2.5461 33 1 0.3218 -2.1334 -3.3773 34 1 -2.0259 -2.5533 -3.7229 35 1 -2.4639 -1.9255 -2.1019 36 1 -3.4705 -4.3858 -1.8398 37 1 -2.4540 -5.1352 -0.7575 38 1 0.5559 -4.3769 -1.5473 39 1 -0.4854 -3.9887 -0.1508 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261042382.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:25 Heat of formation + Delta-G solvation = -0.820266 kcal Electronic energy + Delta-G solvation = -17160.921785 eV Core-core repulsion = 14717.035671 eV Total energy + Delta-G solvation = -2443.886114 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.65238 -35.76542 -33.01647 -32.39228 -29.83787 -27.77262 -26.30529 -25.78586 -24.72634 -21.68590 -20.14149 -19.57919 -18.35117 -16.17102 -15.56927 -15.39677 -14.88909 -14.24540 -13.89566 -13.48210 -13.08832 -12.80844 -12.44931 -11.78388 -11.55761 -11.49506 -11.25912 -11.13787 -10.90757 -10.68494 -10.64911 -10.53893 -10.47432 -10.17093 -9.89880 -9.48595 -9.26978 -9.23920 -8.67472 -8.46478 -8.35093 -7.00451 -5.96834 -3.98904 3.34016 3.38709 3.41998 4.44384 4.77590 5.01326 5.16092 5.34187 5.43120 5.67916 5.90357 6.07132 6.12504 6.15686 6.24735 6.27748 6.41353 6.47737 6.57018 6.63111 6.73682 6.77225 6.87854 6.92426 7.04018 7.18139 7.28147 7.45387 7.54739 7.63478 7.70588 7.79833 7.87424 7.90833 8.17720 8.38358 8.60742 9.05680 9.64072 11.09953 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022555 B = 0.011000 C = 0.008541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.101739 B = 2544.901736 C = 3277.523107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.075 4.075 3 C -0.144 4.144 4 C -0.093 4.093 5 C 0.207 3.793 6 H -0.003 1.003 7 C -0.495 4.495 8 H 0.060 0.940 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.890 3.110 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.276 1.276 15 N -0.493 5.493 16 C 0.033 3.967 17 C -0.116 4.116 18 C 0.075 3.925 19 H 0.029 0.971 20 N -0.837 5.837 21 C 0.057 3.943 22 H 0.028 0.972 23 H 0.100 0.900 24 H 0.014 0.986 25 H 0.078 0.922 26 H 0.036 0.964 27 H 0.044 0.956 28 H 0.036 0.964 29 H 0.013 0.987 30 H 0.086 0.914 31 H 0.259 0.741 32 H 0.076 0.924 33 H 0.030 0.970 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.332 0.668 37 H 0.338 0.662 38 H 0.040 0.960 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.684 -0.276 -3.202 9.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.093 4.093 3 C -0.201 4.201 4 C -0.131 4.131 5 C 0.100 3.900 6 H 0.014 0.986 7 C -0.534 4.534 8 H 0.078 0.922 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.719 3.281 12 H -0.205 1.205 13 H -0.215 1.215 14 H -0.202 1.202 15 N -0.217 5.217 16 C -0.096 4.096 17 C -0.154 4.154 18 C -0.037 4.037 19 H 0.047 0.953 20 N -0.367 5.367 21 C -0.072 4.072 22 H 0.047 0.953 23 H 0.118 0.882 24 H 0.033 0.967 25 H 0.096 0.904 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.031 0.969 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.144 0.856 37 H 0.151 0.849 38 H 0.058 0.942 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.547 0.750 -2.407 8.911 hybrid contribution 0.892 -1.666 -0.474 1.948 sum -7.655 -0.916 -2.880 8.230 Atomic orbital electron populations 1.22112 0.96274 1.03805 0.97616 1.20859 0.94958 0.92776 1.00701 1.21899 1.00340 0.98537 0.99341 1.21558 1.02276 0.95505 0.93767 1.19496 0.80713 0.93409 0.96361 0.98559 1.20982 0.91662 1.37570 1.03155 0.92175 1.24877 0.96847 0.95566 0.96679 1.69888 1.02160 1.45525 1.35500 0.86682 0.77432 0.79621 0.84410 1.20509 1.21515 1.20194 1.65048 1.15582 1.13564 1.27538 1.23190 0.93736 1.00217 0.92424 1.22543 0.98560 0.95442 0.98863 1.22336 0.91626 0.95854 0.93890 0.95264 1.58814 1.05563 1.40238 1.32056 1.22661 0.93147 0.91899 0.99483 0.95309 0.88200 0.96671 0.90418 0.94519 0.93658 0.94436 0.96861 0.89567 0.93072 0.90535 0.95141 0.92759 0.90196 0.85637 0.84937 0.94195 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 7.87 37.16 0.29 -2.55 16 2 C -0.07 -1.64 2.70 -90.62 -0.24 -1.88 16 3 C -0.14 -2.78 9.19 37.16 0.34 -2.44 16 4 C -0.09 -2.18 4.23 -26.73 -0.11 -2.29 16 5 C 0.21 5.03 1.42 -68.87 -0.10 4.93 16 6 H 0.00 -0.09 8.00 -51.93 -0.42 -0.50 16 7 C -0.50 -13.05 6.44 -34.44 -0.22 -13.27 16 8 H 0.06 1.61 7.21 -52.49 -0.38 1.23 16 9 C 0.06 1.66 5.25 -17.81 -0.09 1.56 16 10 N -0.89 -24.91 11.39 55.43 0.63 -24.28 16 11 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 N -0.49 -10.21 1.89 -223.88 -0.42 -10.64 16 16 C 0.03 0.60 5.17 -1.90 -0.01 0.59 16 17 C -0.12 -1.76 6.78 -24.87 -0.17 -1.93 16 18 C 0.07 1.15 4.12 -66.36 -0.27 0.88 16 19 H 0.03 0.44 8.14 -51.92 -0.42 0.01 16 20 N -0.84 -11.15 9.14 -3.52 -0.03 -11.18 16 21 C 0.06 1.10 5.42 -2.75 -0.01 1.08 16 22 H 0.03 0.54 6.55 -51.93 -0.34 0.20 16 23 H 0.10 2.18 5.72 -51.93 -0.30 1.88 16 24 H 0.01 0.27 8.13 -51.93 -0.42 -0.15 16 25 H 0.08 1.94 6.80 -51.93 -0.35 1.58 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.01 0.29 6.73 -51.93 -0.35 -0.06 16 30 H 0.09 2.27 6.25 -51.93 -0.32 1.94 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.08 1.38 5.88 -51.93 -0.31 1.07 16 33 H 0.03 0.57 7.95 -51.93 -0.41 0.16 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.25 8.06 -51.93 -0.42 0.83 16 36 H 0.33 3.63 9.08 -39.29 -0.36 3.28 16 37 H 0.34 4.10 9.00 -39.29 -0.35 3.75 16 38 H 0.04 0.83 7.71 -51.93 -0.40 0.43 16 39 H 0.08 1.54 7.65 -51.93 -0.40 1.14 16 LS Contribution 291.61 15.07 4.39 4.39 Total: -1.00 -27.17 291.61 -7.83 -35.00 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.77 Total: 5.82 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -0.60 Total: -15.32 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.17 Total: -46.09 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.17 -7.83 -35.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042382.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.179 kcal (2) G-P(sol) polarization free energy of solvation -27.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds