Wall clock time and date at job start Mon Mar 30 2020 03:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47512 * 2 1 4 4 C 1.53001 * 109.47442 * 119.99856 * 2 1 3 5 5 C 1.53000 * 109.46826 * 64.99656 * 4 2 1 6 6 H 1.08992 * 109.50874 * 305.05668 * 5 4 2 7 7 C 1.53056 * 109.48806 * 184.99988 * 5 4 2 8 8 N 1.46956 * 109.38342 * 181.64241 * 7 5 4 9 9 C 1.46899 * 111.00293 * 183.17592 * 8 7 5 10 10 C 1.50695 * 109.47186 * 169.99898 * 9 8 7 11 11 H 1.08001 * 120.00374 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99963 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99879 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00173 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47087 * 90.00091 * 14 12 10 16 16 H 1.48499 * 109.47219 * 210.00013 * 14 12 10 17 17 H 1.48499 * 109.47420 * 330.00356 * 14 12 10 18 18 C 1.46962 * 110.87987 * 59.31148 * 8 7 5 19 19 C 1.53051 * 109.36359 * 300.68149 * 18 8 7 20 20 N 1.46956 * 109.36687 * 58.40092 * 19 18 8 21 21 H 1.08997 * 109.47048 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46851 * 299.99908 * 1 2 3 23 23 H 1.08998 * 109.47045 * 59.99788 * 1 2 3 24 24 H 1.08998 * 109.47368 * 240.00101 * 2 1 3 25 25 H 1.09000 * 109.47439 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.46568 * 299.99884 * 3 2 1 27 27 H 1.09000 * 109.47438 * 59.99889 * 3 2 1 28 28 H 1.09000 * 109.47404 * 305.00036 * 4 2 1 29 29 H 1.09000 * 109.47508 * 184.99715 * 4 2 1 30 30 H 1.09002 * 109.48813 * 61.66518 * 7 5 4 31 31 H 1.09002 * 109.48870 * 301.62407 * 7 5 4 32 32 H 1.08997 * 109.47217 * 290.00426 * 9 8 7 33 33 H 1.09001 * 109.46537 * 50.00019 * 9 8 7 34 34 H 0.97008 * 119.99961 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.48625 * 60.64585 * 18 8 7 36 36 H 1.09003 * 109.48941 * 180.69193 * 18 8 7 37 37 H 1.09002 * 109.48907 * 178.36861 * 19 18 8 38 38 H 1.09003 * 109.48695 * 298.42968 * 19 18 8 39 39 H 1.00905 * 110.99819 * 176.81404 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 -2.1954 1.1880 6 1 0.5565 -2.2713 1.0518 7 6 2.0354 -2.8894 2.4922 8 7 1.6811 -4.3136 2.4154 9 6 1.9814 -4.9997 3.6791 10 6 1.3862 -6.3839 3.6530 11 1 0.8399 -6.7205 2.7843 12 6 1.5391 -7.2206 4.7381 13 7 2.2040 -6.8106 5.7961 14 14 0.8020 -8.9367 4.7054 15 1 1.7927 -9.8904 4.1448 16 1 0.4452 -9.3485 6.0868 17 1 -0.4179 -8.9355 3.8586 18 6 2.3645 -4.9633 1.2882 19 6 1.9640 -4.2696 -0.0160 20 7 2.3182 -2.8455 0.0607 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1301 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6768 1.9564 0.8900 28 1 1.6055 -0.2617 2.1370 29 1 3.1264 -0.6443 1.2951 30 1 1.5073 -2.4278 3.3266 31 1 3.1104 -2.7896 2.6422 32 1 3.0616 -5.0710 3.8061 33 1 1.5545 -4.4362 4.5088 34 1 2.3113 -7.3992 6.5597 35 1 3.4433 -4.8870 1.4242 36 1 2.0767 -6.0137 1.2450 37 1 2.4920 -4.7312 -0.8505 38 1 0.8889 -4.3695 -0.1657 39 1 2.1120 -2.3743 -0.8073 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261052444.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:31 Heat of formation + Delta-G solvation = -14.758329 kcal Electronic energy + Delta-G solvation = -16269.890402 eV Core-core repulsion = 13825.399888 eV Total energy + Delta-G solvation = -2444.490514 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.87557 -36.26540 -33.83122 -32.14484 -31.00124 -27.48586 -27.22955 -26.45819 -24.19426 -22.32233 -21.20573 -19.61517 -19.05126 -16.30421 -16.23777 -15.40496 -14.61724 -14.39057 -14.22090 -13.83424 -13.73731 -13.23578 -13.02213 -12.79602 -12.30407 -11.93694 -11.72997 -11.66225 -11.26450 -11.10036 -10.85327 -10.79226 -10.65865 -10.61044 -10.40512 -10.26690 -10.16468 -9.61662 -9.13272 -8.42227 -8.11797 -7.17935 -6.00546 -4.01933 3.32870 3.38897 3.43304 4.43524 4.47497 4.72420 4.89456 4.91640 5.10468 5.34995 5.42588 5.52948 5.55358 5.56398 5.67618 5.75787 5.80807 5.88520 5.91816 5.98414 6.03815 6.09801 6.16034 6.26225 6.34092 6.36049 6.56712 6.70333 6.74502 7.24042 7.38447 7.43407 7.65311 7.83281 8.12591 8.25460 8.59041 9.05671 9.62186 11.10398 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.050956 B = 0.005449 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.360301 B = 5137.591256 C = 5320.695058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.108 4.108 5 C 0.090 3.910 6 H 0.046 0.954 7 C 0.062 3.938 8 N -0.539 5.539 9 C 0.193 3.807 10 C -0.506 4.506 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.898 3.102 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.066 3.934 19 C 0.060 3.940 20 N -0.686 5.686 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.028 0.972 32 H -0.009 1.009 33 H 0.029 0.971 34 H 0.261 0.739 35 H 0.027 0.973 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.033 0.967 39 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.990 12.210 -11.511 16.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.146 4.146 5 C -0.020 4.020 6 H 0.064 0.936 7 C -0.067 4.067 8 N -0.264 5.264 9 C 0.068 3.932 10 C -0.545 4.545 11 H 0.080 0.920 12 C -0.146 4.146 13 N -0.539 5.539 14 Si 0.725 3.275 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.062 4.062 19 C -0.070 4.070 20 N -0.319 5.319 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.009 0.991 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.866 11.990 -11.037 16.319 hybrid contribution -0.368 -0.861 -0.037 0.937 sum -1.234 11.129 -11.074 15.748 Atomic orbital electron populations 1.21918 0.95518 1.01928 1.01409 1.21115 0.95599 0.96036 0.98824 1.21822 1.00952 0.96087 1.01386 1.21681 1.01536 0.94019 0.97394 1.21595 0.96183 0.92551 0.91683 0.93580 1.22084 0.98267 0.90808 0.95562 1.62258 1.57476 1.00470 1.06193 1.19699 0.94636 0.93794 0.85045 1.21156 1.33817 0.97865 1.01673 0.91957 1.24991 0.95503 0.98705 0.95422 1.69965 1.41646 1.36620 1.05626 0.86505 0.79498 0.84258 0.77198 1.20736 1.21258 1.19804 1.21988 0.95925 0.98806 0.89511 1.22050 0.98377 0.88176 0.98387 1.60598 1.61844 1.03104 1.06327 0.92452 0.92665 0.93146 0.91267 0.92715 0.93082 0.92809 0.91569 0.91249 0.91395 0.95345 0.99140 0.95292 0.92948 0.95476 0.89785 0.91308 0.94879 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.96 37.16 0.33 -1.18 16 2 C -0.10 -1.00 2.80 -90.62 -0.25 -1.25 16 3 C -0.15 -1.30 9.19 37.16 0.34 -0.96 16 4 C -0.11 -1.34 4.36 -26.73 -0.12 -1.46 16 5 C 0.09 1.38 2.52 -67.65 -0.17 1.21 16 6 H 0.05 0.74 6.34 -51.93 -0.33 0.42 16 7 C 0.06 1.19 4.89 -3.76 -0.02 1.17 16 8 N -0.54 -12.16 4.70 -235.90 -1.11 -13.27 16 9 C 0.19 5.21 4.72 -4.98 -0.02 5.19 16 10 C -0.51 -14.48 8.47 -34.44 -0.29 -14.78 16 11 H 0.06 1.76 7.13 -52.49 -0.37 1.39 16 12 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 14 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 C 0.07 1.36 5.43 -3.76 -0.02 1.34 16 19 C 0.06 0.97 6.72 -3.77 -0.03 0.94 16 20 N -0.69 -10.22 6.54 -106.58 -0.70 -10.92 16 21 H 0.06 0.64 6.46 -51.93 -0.34 0.30 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.71 6.49 -51.93 -0.34 0.37 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 33 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 1.82 6.79 -51.93 -0.35 1.46 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.33 4.14 7.01 -39.29 -0.28 3.87 16 LS Contribution 301.21 15.07 4.54 4.54 Total: -1.00 -29.98 301.21 -8.94 -38.92 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -7.05 Total: -1.41 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -0.34 Total: -8.30 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -1.07 Total: -50.57 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.98 -8.94 -38.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261052444.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.162 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds