Wall clock time and date at job start Mon Mar 30 2020 03:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47512 * 2 1 4 4 C 1.53001 * 109.47442 * 119.99856 * 2 1 3 5 5 C 1.53000 * 109.46826 * 64.99656 * 4 2 1 6 6 H 1.08992 * 109.50874 * 305.05668 * 5 4 2 7 7 C 1.53056 * 109.48806 * 184.99988 * 5 4 2 8 8 N 1.46956 * 109.38342 * 181.64241 * 7 5 4 9 9 C 1.46899 * 111.00293 * 183.17592 * 8 7 5 10 10 C 1.50695 * 109.47186 * 169.99898 * 9 8 7 11 11 H 1.08001 * 120.00374 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99963 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99879 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00173 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47087 * 90.00091 * 14 12 10 16 16 H 1.48499 * 109.47219 * 210.00013 * 14 12 10 17 17 H 1.48499 * 109.47420 * 330.00356 * 14 12 10 18 18 C 1.46962 * 110.87987 * 59.31148 * 8 7 5 19 19 C 1.53051 * 109.36359 * 300.68149 * 18 8 7 20 20 N 1.46956 * 109.36687 * 58.40092 * 19 18 8 21 21 H 1.08997 * 109.47048 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46851 * 299.99908 * 1 2 3 23 23 H 1.08998 * 109.47045 * 59.99788 * 1 2 3 24 24 H 1.08998 * 109.47368 * 240.00101 * 2 1 3 25 25 H 1.09000 * 109.47439 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.46568 * 299.99884 * 3 2 1 27 27 H 1.09000 * 109.47438 * 59.99889 * 3 2 1 28 28 H 1.09000 * 109.47404 * 305.00036 * 4 2 1 29 29 H 1.09000 * 109.47508 * 184.99715 * 4 2 1 30 30 H 1.09002 * 109.48813 * 61.66518 * 7 5 4 31 31 H 1.09002 * 109.48870 * 301.62407 * 7 5 4 32 32 H 1.08997 * 109.47217 * 290.00426 * 9 8 7 33 33 H 1.09001 * 109.46537 * 50.00019 * 9 8 7 34 34 H 0.97008 * 119.99961 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.48625 * 60.64585 * 18 8 7 36 36 H 1.09003 * 109.48941 * 180.69193 * 18 8 7 37 37 H 1.09002 * 109.48907 * 178.36861 * 19 18 8 38 38 H 1.09003 * 109.48695 * 298.42968 * 19 18 8 39 39 H 1.00905 * 110.99819 * 176.81404 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 -2.1954 1.1880 6 1 0.5565 -2.2713 1.0518 7 6 2.0354 -2.8894 2.4922 8 7 1.6811 -4.3136 2.4154 9 6 1.9814 -4.9997 3.6791 10 6 1.3862 -6.3839 3.6530 11 1 0.8399 -6.7205 2.7843 12 6 1.5391 -7.2206 4.7381 13 7 2.2040 -6.8106 5.7961 14 14 0.8020 -8.9367 4.7054 15 1 1.7927 -9.8904 4.1448 16 1 0.4452 -9.3485 6.0868 17 1 -0.4179 -8.9355 3.8586 18 6 2.3645 -4.9633 1.2882 19 6 1.9640 -4.2696 -0.0160 20 7 2.3182 -2.8455 0.0607 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1301 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6768 1.9564 0.8900 28 1 1.6055 -0.2617 2.1370 29 1 3.1264 -0.6443 1.2951 30 1 1.5073 -2.4278 3.3266 31 1 3.1104 -2.7896 2.6422 32 1 3.0616 -5.0710 3.8061 33 1 1.5545 -4.4362 4.5088 34 1 2.3113 -7.3992 6.5597 35 1 3.4433 -4.8870 1.4242 36 1 2.0767 -6.0137 1.2450 37 1 2.4920 -4.7312 -0.8505 38 1 0.8889 -4.3695 -0.1657 39 1 2.1120 -2.3743 -0.8073 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261052444.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:30 Heat of formation + Delta-G solvation = -35.746549 kcal Electronic energy + Delta-G solvation = -16270.800519 eV Core-core repulsion = 13825.399888 eV Total energy + Delta-G solvation = -2445.400631 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.28269 -37.51046 -35.47700 -34.11467 -32.30948 -29.48165 -27.98315 -27.76033 -25.94463 -23.92949 -22.79068 -20.82602 -20.35797 -18.50601 -17.63399 -16.59609 -16.44828 -15.82635 -15.51493 -15.34836 -15.15520 -14.74525 -14.34571 -14.09443 -13.71136 -13.24677 -13.05440 -12.89712 -12.72381 -12.63787 -12.56586 -12.26027 -12.22586 -12.10062 -11.71640 -11.52881 -11.46594 -11.32776 -10.97021 -10.64194 -9.40447 -9.05483 -8.22650 -6.33790 1.40014 1.41948 1.53702 2.38946 3.09222 3.23436 3.25878 3.83038 3.98987 4.06176 4.21118 4.25461 4.39783 4.43836 4.47171 4.64721 4.69376 4.81586 4.83955 4.91997 4.93126 4.98567 5.04899 5.09546 5.15119 5.18069 5.25147 5.26431 5.38612 5.51737 5.55224 5.61564 5.98299 6.06506 6.27365 6.55899 6.62600 6.81996 7.36250 8.88918 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.050956 B = 0.005449 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.360301 B = 5137.591256 C = 5320.695058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.101 4.101 5 C 0.101 3.899 6 H 0.044 0.956 7 C 0.059 3.941 8 N -0.545 5.545 9 C 0.208 3.792 10 C -0.525 4.525 11 H 0.063 0.937 12 C 0.001 3.999 13 N -0.936 5.936 14 Si 0.973 3.027 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.264 1.264 18 C 0.066 3.934 19 C 0.071 3.929 20 N -0.686 5.686 21 H 0.044 0.956 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.015 0.985 32 H -0.043 1.043 33 H 0.002 0.998 34 H 0.265 0.735 35 H 0.012 0.988 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.035 0.965 39 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.765 12.506 -13.446 18.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.200 4.200 4 C -0.140 4.140 5 C -0.009 4.009 6 H 0.062 0.938 7 C -0.070 4.070 8 N -0.270 5.270 9 C 0.082 3.918 10 C -0.563 4.563 11 H 0.082 0.918 12 C -0.197 4.197 13 N -0.576 5.576 14 Si 0.797 3.203 15 H -0.197 1.197 16 H -0.206 1.206 17 H -0.188 1.188 18 C -0.063 4.063 19 C -0.059 4.059 20 N -0.320 5.320 21 H 0.063 0.937 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.033 0.967 32 H -0.025 1.025 33 H 0.020 0.980 34 H 0.074 0.926 35 H 0.030 0.970 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.053 0.947 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.643 12.314 -13.008 17.987 hybrid contribution -0.090 -0.905 0.588 1.083 sum -1.732 11.408 -12.420 16.953 Atomic orbital electron populations 1.21904 0.95231 1.01338 1.02164 1.21075 0.95740 0.96680 0.97494 1.21796 1.01010 0.95095 1.02110 1.21631 1.01312 0.92043 0.98966 1.21473 0.95963 0.93843 0.89664 0.93813 1.22211 0.97415 0.89166 0.98190 1.62217 1.57893 1.02023 1.04826 1.19358 0.92072 0.93781 0.86603 1.21431 1.34133 0.98717 1.01994 0.91840 1.25967 0.95663 1.03318 0.94770 1.70100 1.42701 1.38431 1.06389 0.85323 0.78922 0.78481 0.77531 1.19667 1.20617 1.18792 1.22023 0.94794 0.98583 0.90901 1.21929 0.98779 0.88752 0.96439 1.60519 1.61732 1.02563 1.07203 0.93660 0.92775 0.91606 0.90716 0.92648 0.91746 0.92747 0.91430 0.91683 0.91844 0.96662 1.02529 0.98016 0.92607 0.97013 0.91375 0.88412 0.94696 0.82730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.96 71.98 0.64 -1.99 16 2 C -0.09 -1.64 2.80 -10.79 -0.03 -1.67 16 3 C -0.14 -2.18 9.19 71.98 0.66 -1.52 16 4 C -0.10 -2.36 4.36 30.59 0.13 -2.23 16 5 C 0.10 2.99 2.52 44.92 0.11 3.10 16 6 H 0.04 1.36 6.34 -2.39 -0.02 1.34 16 7 C 0.06 2.32 4.89 86.31 0.42 2.74 16 8 N -0.55 -25.30 4.70 -900.26 -4.23 -29.53 16 9 C 0.21 11.77 4.72 85.56 0.40 12.18 16 10 C -0.52 -30.74 8.47 25.60 0.22 -30.52 16 11 H 0.06 3.63 7.13 -2.91 -0.02 3.61 16 12 C 0.00 0.04 5.46 84.65 0.46 0.51 16 13 N -0.94 -57.75 13.29 21.45 0.28 -57.47 16 14 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 18 C 0.07 2.71 5.43 86.31 0.47 3.18 16 19 C 0.07 2.17 6.72 86.31 0.58 2.75 16 20 N -0.69 -19.07 6.54 -491.11 -3.21 -22.28 16 21 H 0.04 0.91 6.46 -2.39 -0.02 0.89 16 22 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.07 1.28 6.49 -2.39 -0.02 1.26 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 2.50 8.07 -2.39 -0.02 2.48 16 31 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 32 H -0.04 -2.66 8.12 -2.39 -0.02 -2.68 16 33 H 0.00 0.11 8.03 -2.39 -0.02 0.09 16 34 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 35 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.07 2.99 6.79 -2.39 -0.02 2.98 16 37 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.35 7.69 7.01 -89.69 -0.63 7.06 16 Total: -1.00 -65.71 301.21 -0.69 -66.40 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.37 Total: 9.40 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 4.08 Total: -13.48 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -7.16 Total: -109.28 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -65.71 -0.69 -66.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261052444.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.652 kcal (2) G-P(sol) polarization free energy of solvation -65.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds