Wall clock time and date at job start Mon Mar 30 2020 03:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47421 * 2 1 4 4 C 1.53000 * 109.47417 * 120.00697 * 2 1 3 5 5 C 1.52996 * 109.47358 * 174.08769 * 4 2 1 6 6 H 1.09002 * 109.49111 * 57.27462 * 5 4 2 7 7 C 1.53052 * 109.48852 * 297.23452 * 5 4 2 8 8 N 1.46954 * 109.36471 * 181.63459 * 7 5 4 9 9 C 1.46958 * 110.88470 * 59.31520 * 8 7 5 10 10 C 1.53053 * 109.36230 * 300.68033 * 9 8 7 11 11 N 1.46955 * 109.48928 * 177.31602 * 5 4 2 12 12 C 1.46897 * 111.00130 * 303.15737 * 11 5 4 13 13 C 1.50700 * 109.46908 * 174.17177 * 12 11 5 14 14 H 1.08001 * 120.00174 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99927 * 179.97438 * 13 12 11 16 16 N 1.31524 * 119.99999 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00100 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47009 * 90.00174 * 17 15 13 19 19 H 1.48504 * 109.47064 * 209.99880 * 17 15 13 20 20 H 1.48497 * 109.47000 * 329.99971 * 17 15 13 21 21 H 1.08994 * 109.46645 * 299.99942 * 1 2 3 22 22 H 1.08994 * 109.47091 * 59.99658 * 1 2 3 23 23 H 1.09004 * 109.46777 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46719 * 240.00429 * 2 1 3 25 25 H 1.08999 * 109.47115 * 296.01518 * 3 2 1 26 26 H 1.09007 * 109.46771 * 56.00799 * 3 2 1 27 27 H 1.09001 * 109.47452 * 176.00748 * 3 2 1 28 28 H 1.08993 * 109.47214 * 54.08368 * 4 2 1 29 29 H 1.09004 * 109.46694 * 294.08290 * 4 2 1 30 30 H 1.09003 * 109.48383 * 301.59952 * 7 5 4 31 31 H 1.08995 * 109.49072 * 61.65765 * 7 5 4 32 32 H 1.00901 * 111.00415 * 183.18558 * 8 7 5 33 33 H 1.09003 * 109.48706 * 60.64809 * 9 8 7 34 34 H 1.09001 * 109.49000 * 180.69184 * 9 8 7 35 35 H 1.08996 * 109.48348 * 178.36690 * 10 9 8 36 36 H 1.08995 * 109.48853 * 298.41037 * 10 9 8 37 37 H 1.09004 * 109.46769 * 294.16846 * 12 11 5 38 38 H 1.08995 * 109.47660 * 54.16904 * 12 11 5 39 39 H 0.96999 * 119.99619 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5628 -0.8513 1.1770 6 1 4.0078 0.1384 1.0739 7 6 3.9453 -1.7114 -0.0298 8 7 5.4059 -1.8669 -0.0741 9 6 5.9025 -2.5025 1.1543 10 6 5.5201 -1.6424 2.3611 11 7 4.0594 -1.4865 2.4057 12 6 3.6464 -0.7284 3.5942 13 6 4.0487 -1.4822 4.8356 14 1 4.5596 -2.4298 4.7501 15 6 3.7644 -0.9620 6.0804 16 7 3.1426 0.1923 6.1844 17 14 4.2624 -1.8967 7.6192 18 1 5.6270 -1.4807 8.0312 19 1 3.3027 -1.5977 8.7123 20 1 4.2532 -3.3546 7.3375 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.7363 1.9353 -0.9235 26 1 1.6195 1.9765 0.8521 27 1 3.1278 1.4433 0.0716 28 1 1.5929 -1.7139 1.3036 29 1 1.7658 -0.1501 2.1360 30 1 3.4777 -2.6919 0.0597 31 1 3.6032 -1.2272 -0.9445 32 1 5.6897 -2.3873 -0.8906 33 1 5.4572 -3.4921 1.2573 34 1 6.9874 -2.5955 1.1028 35 1 5.8621 -2.1266 3.2758 36 1 5.9879 -0.6620 2.2718 37 1 4.1311 0.2480 3.5889 38 1 2.5645 -0.5969 3.5835 39 1 2.9423 0.5580 7.0602 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261060051.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:37 Heat of formation + Delta-G solvation = -9.927597 kcal Electronic energy + Delta-G solvation = -16691.686489 eV Core-core repulsion = 14247.405452 eV Total energy + Delta-G solvation = -2444.281038 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.89481 -35.82491 -34.14731 -32.18653 -30.70829 -27.58685 -26.92454 -25.99565 -24.52265 -22.03876 -21.26944 -19.69558 -18.66051 -16.37030 -16.20250 -15.03738 -14.55903 -14.53169 -14.04053 -13.76068 -13.42727 -13.19568 -12.88077 -12.75467 -12.04065 -11.96205 -11.82417 -11.43144 -11.23395 -10.99715 -10.86037 -10.72446 -10.57716 -10.42764 -10.20066 -10.07234 -9.90490 -9.42020 -9.07119 -8.40846 -8.16394 -7.13837 -6.00669 -4.01491 3.32398 3.38598 3.42742 4.43583 4.54194 4.82306 5.16363 5.24943 5.32002 5.36030 5.48379 5.59150 5.72902 5.82961 5.85059 5.88276 5.96708 6.00681 6.03065 6.13876 6.22158 6.28271 6.40060 6.43596 6.50477 6.61324 6.74774 6.83361 6.87678 7.23954 7.41178 7.45216 7.62685 7.83286 8.14381 8.27861 8.61642 9.05998 9.62314 11.10208 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023576 B = 0.008525 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.347220 B = 3283.688089 C = 4177.299819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.149 4.149 4 C -0.110 4.110 5 C 0.087 3.913 6 H 0.040 0.960 7 C 0.066 3.934 8 N -0.693 5.693 9 C 0.058 3.942 10 C 0.067 3.933 11 N -0.535 5.535 12 C 0.191 3.809 13 C -0.508 4.508 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.896 3.104 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.055 0.945 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.332 0.668 33 H 0.033 0.967 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.026 0.974 37 H -0.012 1.012 38 H 0.038 0.962 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.524 -1.794 -12.565 12.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.148 4.148 5 C -0.023 4.023 6 H 0.057 0.943 7 C -0.064 4.064 8 N -0.324 5.324 9 C -0.072 4.072 10 C -0.062 4.062 11 N -0.261 5.261 12 C 0.066 3.934 13 C -0.547 4.547 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.724 3.276 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.198 1.198 21 H 0.074 0.926 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.149 0.851 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.045 0.955 37 H 0.006 0.994 38 H 0.056 0.944 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.679 -1.497 -12.156 12.267 hybrid contribution 0.315 -0.519 0.765 0.976 sum -0.365 -2.016 -11.391 11.574 Atomic orbital electron populations 1.21825 0.95641 1.01423 1.01351 1.21159 0.95304 0.96382 0.98657 1.21892 1.01572 0.96068 1.01046 1.21733 0.94554 1.00802 0.97674 1.21581 0.94651 0.95567 0.90481 0.94252 1.22082 0.87326 0.98757 0.98228 1.60526 1.12263 1.55014 1.04566 1.22087 0.98672 0.96174 0.90217 1.21983 0.89417 0.97990 0.96815 1.62259 1.10024 1.51420 1.02366 1.19766 0.96527 0.91305 0.85780 1.21185 1.37379 1.05998 0.90100 0.92015 1.24981 0.95399 0.95076 0.99116 1.69964 1.41476 1.18273 1.24008 0.86531 0.78195 0.80227 0.82662 1.20766 1.21269 1.19842 0.92607 0.93282 0.92914 0.91584 0.93465 0.92649 0.92310 0.91715 0.90511 0.94896 0.91192 0.85112 0.94829 0.91350 0.89587 0.95534 0.99430 0.94409 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.19 37.16 0.34 -1.45 16 2 C -0.10 -1.33 2.76 -90.62 -0.25 -1.58 16 3 C -0.15 -2.04 9.05 37.16 0.34 -1.70 16 4 C -0.11 -1.90 3.94 -26.73 -0.11 -2.00 16 5 C 0.09 1.62 1.89 -67.66 -0.13 1.49 16 6 H 0.04 0.80 6.40 -51.93 -0.33 0.46 16 7 C 0.07 1.03 5.68 -3.77 -0.02 1.01 16 8 N -0.69 -10.59 6.90 -113.63 -0.78 -11.37 16 9 C 0.06 0.95 6.72 -3.76 -0.03 0.93 16 10 C 0.07 1.37 5.40 -3.76 -0.02 1.35 16 11 N -0.54 -11.85 4.55 -227.93 -1.04 -12.89 16 12 C 0.19 5.03 4.44 -4.98 -0.02 5.01 16 13 C -0.51 -14.37 8.45 -34.44 -0.29 -14.66 16 14 H 0.06 1.73 6.83 -52.49 -0.36 1.37 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 17 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.85 6.26 -51.93 -0.33 0.52 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 27 H 0.06 0.87 6.37 -51.93 -0.33 0.53 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.08 1.53 6.08 -51.93 -0.32 1.21 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.96 6.46 -51.93 -0.34 0.63 16 32 H 0.33 4.11 8.90 -39.29 -0.35 3.76 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 1.86 6.51 -51.93 -0.34 1.53 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H -0.01 -0.35 8.14 -51.93 -0.42 -0.77 16 38 H 0.04 1.05 5.87 -51.93 -0.31 0.74 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 296.12 15.07 4.46 4.46 Total: -1.00 -29.74 296.12 -8.70 -38.44 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.78 Total: 0.79 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -0.28 Total: -10.12 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -1.08 Total: -50.33 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.74 -8.70 -38.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261060051.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.514 kcal (2) G-P(sol) polarization free energy of solvation -29.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds