Wall clock time and date at job start Mon Mar 30 2020 03:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46866 * 2 1 4 4 C 1.52999 * 109.47140 * 239.99990 * 2 1 3 5 5 C 1.53003 * 109.47075 * 294.48405 * 4 2 1 6 6 H 1.08995 * 109.48536 * 185.87046 * 5 4 2 7 7 C 1.53053 * 109.48579 * 305.93380 * 5 4 2 8 8 N 1.46959 * 109.36115 * 178.36823 * 7 5 4 9 9 C 1.46955 * 110.88304 * 300.68040 * 8 7 5 10 10 C 1.53051 * 109.36213 * 59.32138 * 9 8 7 11 11 N 1.46954 * 109.36552 * 301.59724 * 10 9 8 12 12 C 1.46902 * 110.99987 * 183.18852 * 11 10 9 13 13 C 1.50696 * 109.47368 * 300.51756 * 12 11 10 14 14 H 1.08000 * 119.99607 * 4.43213 * 13 12 11 15 15 C 1.37873 * 120.00218 * 184.42798 * 13 12 11 16 16 N 1.31520 * 120.00002 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00104 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.46913 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47165 * 119.99881 * 17 15 13 20 20 H 1.48504 * 109.46743 * 239.99669 * 17 15 13 21 21 H 1.09006 * 109.46861 * 187.77123 * 1 2 3 22 22 H 1.08997 * 109.47303 * 307.76759 * 1 2 3 23 23 H 1.08993 * 109.47302 * 67.77575 * 1 2 3 24 24 H 1.09001 * 109.47003 * 119.99919 * 2 1 3 25 25 H 1.09001 * 109.47058 * 60.00321 * 3 2 1 26 26 H 1.08997 * 109.47008 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47243 * 299.99772 * 3 2 1 28 28 H 1.09000 * 109.46815 * 54.48422 * 4 2 1 29 29 H 1.09001 * 109.47103 * 174.48172 * 4 2 1 30 30 H 1.08995 * 109.48962 * 298.33671 * 7 5 4 31 31 H 1.08994 * 109.48622 * 58.40828 * 7 5 4 32 32 H 1.00901 * 110.99387 * 64.55078 * 8 7 5 33 33 H 1.08996 * 109.48917 * 299.35292 * 9 8 7 34 34 H 1.08997 * 109.50606 * 179.29527 * 9 8 7 35 35 H 1.09006 * 109.49075 * 181.63228 * 10 9 8 36 36 H 1.09003 * 109.50809 * 61.57920 * 10 9 8 37 37 H 1.09003 * 109.46939 * 60.52493 * 12 11 10 38 38 H 1.09005 * 109.46771 * 180.51689 * 12 11 10 39 39 H 0.96997 * 120.00240 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6464 -2.1982 -1.1818 6 1 2.0974 -2.7332 -2.0175 7 6 2.1410 -2.7988 0.1362 8 7 1.7277 -4.2068 0.2155 9 6 0.2649 -4.3282 0.1433 10 6 -0.2296 -3.7276 -1.1747 11 7 0.1836 -2.3196 -1.2540 12 6 -0.3377 -1.6858 -2.4724 13 6 0.1797 -2.4209 -3.6819 14 1 0.7717 -3.3155 -3.5576 15 6 -0.1028 -1.9514 -4.9471 16 7 -0.8235 -0.8616 -5.0984 17 14 0.5379 -2.8630 -6.4464 18 1 1.3168 -4.0492 -6.0089 19 1 -0.6062 -3.3030 -7.2845 20 1 1.4131 -1.9610 -7.2375 21 1 -0.3633 -1.0183 0.1390 22 1 -0.3634 0.6294 0.8123 23 1 -0.3633 0.3887 -0.9512 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 0.8900 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.5983 -0.2676 -2.1364 29 1 3.1255 -0.6365 -1.3000 30 1 3.2283 -2.7360 0.1790 31 1 1.7113 -2.2461 0.9715 32 1 2.1721 -4.7552 -0.5055 33 1 -0.1860 -3.7929 0.9788 34 1 -0.0158 -5.3803 0.1915 35 1 -1.3170 -3.7904 -1.2176 36 1 0.1997 -4.2803 -2.0103 37 1 -1.4271 -1.7224 -2.4633 38 1 -0.0094 -0.6471 -2.5105 39 1 -1.0219 -0.5311 -5.9884 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261060053.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:39 Heat of formation + Delta-G solvation = -18.136860 kcal Electronic energy + Delta-G solvation = -17289.657045 eV Core-core repulsion = 14845.020027 eV Total energy + Delta-G solvation = -2444.637018 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.76464 -36.79824 -35.79317 -33.95522 -32.06855 -29.21542 -27.90827 -27.40275 -25.89913 -23.69014 -22.94766 -21.63603 -20.02684 -18.33529 -17.15782 -16.58805 -16.32826 -15.98692 -15.68162 -15.27369 -14.86588 -14.47129 -14.27777 -13.44854 -13.40935 -13.18376 -13.05722 -12.90312 -12.76084 -12.60020 -12.41991 -12.32511 -12.18619 -11.95581 -11.70873 -11.54475 -11.36697 -11.20474 -10.96842 -10.55045 -9.27891 -8.81799 -8.14509 -6.35668 1.29830 1.31888 1.42116 2.32884 3.07393 3.27921 3.48700 3.97985 4.16019 4.25646 4.31307 4.40573 4.48897 4.52113 4.59600 4.73969 4.85802 4.95329 4.97062 5.00855 5.01035 5.15410 5.22263 5.26846 5.31564 5.33546 5.39890 5.43191 5.48444 5.71392 5.78755 5.97005 6.06814 6.08038 6.25428 6.48749 6.60475 6.87070 7.35151 8.84610 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022706 B = 0.010670 C = 0.008515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.841383 B = 2623.591792 C = 3287.536481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.144 4.144 4 C -0.102 4.102 5 C 0.059 3.941 6 H 0.012 0.988 7 C 0.069 3.931 8 N -0.683 5.683 9 C 0.070 3.930 10 C 0.020 3.980 11 N -0.511 5.511 12 C 0.199 3.801 13 C -0.551 4.551 14 H 0.049 0.951 15 C 0.013 3.987 16 N -0.924 5.924 17 Si 0.951 3.049 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.279 1.279 21 H 0.086 0.914 22 H 0.042 0.958 23 H 0.018 0.982 24 H 0.083 0.917 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.033 0.967 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.337 0.663 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.014 0.986 37 H -0.010 1.010 38 H 0.028 0.972 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.782 -2.160 10.644 12.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 C -0.201 4.201 4 C -0.141 4.141 5 C -0.051 4.051 6 H 0.030 0.970 7 C -0.061 4.061 8 N -0.310 5.310 9 C -0.060 4.060 10 C -0.110 4.110 11 N -0.235 5.235 12 C 0.073 3.927 13 C -0.590 4.590 14 H 0.067 0.933 15 C -0.186 4.186 16 N -0.564 5.564 17 Si 0.777 3.223 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.205 1.205 21 H 0.104 0.896 22 H 0.061 0.939 23 H 0.037 0.963 24 H 0.101 0.899 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.153 0.847 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.008 0.992 38 H 0.046 0.954 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.530 -1.836 11.643 13.020 hybrid contribution -0.005 -0.350 -3.334 3.353 sum 5.526 -2.186 8.308 10.215 Atomic orbital electron populations 1.22104 0.95748 1.03628 0.98827 1.21003 0.95886 0.95569 0.97293 1.21846 1.01042 0.96072 1.01136 1.21596 0.99741 0.94341 0.98382 1.22191 0.88807 0.96799 0.97347 0.97046 1.22249 1.00278 0.88058 0.95483 1.60927 1.07437 1.09996 1.52619 1.22068 0.87845 1.00861 0.95216 1.22738 1.00229 0.90100 0.97908 1.62812 1.09860 1.13434 1.37405 1.19513 0.93008 0.94954 0.85250 1.21997 1.33057 1.10854 0.93084 0.93285 1.25739 0.95298 0.95676 1.01915 1.70064 1.39524 1.23361 1.23458 0.85616 0.78236 0.78751 0.79722 1.19442 1.20478 1.20468 0.89595 0.93888 0.96278 0.89853 0.91763 0.91934 0.94737 0.94546 0.91379 0.89482 0.89461 0.84655 0.90226 0.89168 0.92314 0.96748 0.99162 0.95370 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.02 7.71 71.98 0.56 -4.47 16 2 C -0.08 -2.39 2.58 -10.79 -0.03 -2.42 16 3 C -0.14 -3.82 9.19 71.98 0.66 -3.16 16 4 C -0.10 -3.63 4.47 30.59 0.14 -3.50 16 5 C 0.06 2.15 1.93 44.92 0.09 2.24 16 6 H 0.01 0.49 6.93 -2.39 -0.02 0.48 16 7 C 0.07 1.97 5.55 86.31 0.48 2.45 16 8 N -0.68 -18.90 6.91 -513.45 -3.55 -22.45 16 9 C 0.07 2.00 6.72 86.31 0.58 2.58 16 10 C 0.02 0.77 5.24 86.31 0.45 1.22 16 11 N -0.51 -20.74 1.74 -875.01 -1.52 -22.27 16 12 C 0.20 10.25 3.87 85.56 0.33 10.58 16 13 C -0.55 -30.42 7.67 25.60 0.20 -30.23 16 14 H 0.05 2.71 5.81 -2.91 -0.02 2.69 16 15 C 0.01 0.73 5.46 84.65 0.46 1.20 16 16 N -0.92 -55.19 13.29 21.45 0.28 -54.90 16 17 Si 0.95 44.40 29.54 68.60 2.03 46.42 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 21 H 0.09 3.15 5.69 -2.38 -0.01 3.14 16 22 H 0.04 1.28 8.13 -2.39 -0.02 1.27 16 23 H 0.02 0.76 6.43 -2.39 -0.02 0.74 16 24 H 0.08 2.19 5.98 -2.39 -0.01 2.18 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 28 H 0.04 1.61 5.94 -2.39 -0.01 1.60 16 29 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.09 2.43 6.12 -2.39 -0.01 2.41 16 32 H 0.34 9.17 8.89 -89.69 -0.80 8.38 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 36 H 0.01 0.60 6.47 -2.39 -0.02 0.59 16 37 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H 0.03 1.57 4.40 -2.38 -0.01 1.56 16 39 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -60.39 285.56 1.38 -59.01 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.23 Total: 17.68 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 3.91 Total: -23.50 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -4.79 Total: -99.62 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -60.39 1.38 -59.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261060053.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.875 kcal (2) G-P(sol) polarization free energy of solvation -60.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds