Wall clock time and date at job start Mon Mar 30 2020 03:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47473 * 2 1 4 4 C 1.52998 * 109.47369 * 120.00273 * 2 1 3 5 5 N 1.46901 * 109.47103 * 64.99751 * 4 2 1 6 6 C 1.46896 * 111.00277 * 185.34278 * 5 4 2 7 7 C 1.50703 * 110.28774 * 304.29633 * 6 5 4 8 8 H 1.08000 * 119.99826 * 122.65979 * 7 6 5 9 9 C 1.37872 * 119.99897 * 302.37396 * 7 6 5 10 10 N 1.31513 * 120.00472 * 187.43810 * 9 7 6 11 11 Si 1.86808 * 119.99903 * 7.43985 * 9 7 6 12 12 H 1.48498 * 109.46931 * 84.53597 * 11 9 7 13 13 H 1.48494 * 109.46976 * 204.53560 * 11 9 7 14 14 H 1.48500 * 109.46970 * 324.53889 * 11 9 7 15 15 C 1.54261 * 110.32832 * 182.16171 * 6 5 4 16 16 C 1.54375 * 105.06320 * 241.00302 * 15 6 5 17 17 N 1.48558 * 104.59310 * 23.85580 * 16 15 6 18 18 C 1.46904 * 110.99848 * 200.95943 * 17 16 15 19 19 C 1.48564 * 104.22262 * 320.51194 * 17 16 15 20 20 H 1.09002 * 109.46955 * 299.99855 * 1 2 3 21 21 H 1.09000 * 109.47594 * 59.99665 * 1 2 3 22 22 H 1.09003 * 109.47312 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46955 * 240.00145 * 2 1 3 24 24 H 1.08995 * 109.47500 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.46984 * 300.00708 * 3 2 1 26 26 H 1.09002 * 109.46912 * 60.00118 * 3 2 1 27 27 H 1.08997 * 109.47083 * 304.99649 * 4 2 1 28 28 H 1.09002 * 109.47159 * 184.99823 * 4 2 1 29 29 H 1.00902 * 111.00066 * 61.39141 * 5 4 2 30 30 H 0.96993 * 120.00044 * 180.02562 * 10 9 7 31 31 H 1.09005 * 110.31918 * 359.90252 * 15 6 5 32 32 H 1.09007 * 110.32043 * 122.00413 * 15 6 5 33 33 H 1.09005 * 110.40795 * 142.62945 * 16 15 6 34 34 H 1.09001 * 110.41243 * 265.07365 * 16 15 6 35 35 H 1.09001 * 109.47404 * 60.12225 * 18 17 16 36 36 H 1.09004 * 109.47017 * 180.12786 * 18 17 16 37 37 H 1.09000 * 109.46623 * 300.12361 * 18 17 16 38 38 H 1.08998 * 110.40998 * 280.70451 * 19 17 16 39 39 H 1.09000 * 110.40871 * 158.26528 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6513 -2.1367 1.1903 6 6 2.0135 -2.8342 2.4314 7 6 3.4855 -2.6727 2.7111 8 1 3.8133 -2.2359 3.6429 9 6 4.4137 -3.0878 1.7801 10 7 5.6940 -3.0834 2.0807 11 14 3.8528 -3.6568 0.0915 12 1 3.6846 -2.4789 -0.7970 13 1 4.8705 -4.5711 -0.4860 14 1 2.5576 -4.3724 0.2153 15 6 1.6478 -4.3295 2.3320 16 6 0.6249 -4.5684 3.4632 17 7 0.0314 -3.2310 3.7199 18 6 -0.5746 -3.1717 5.0568 19 6 1.1806 -2.2954 3.6144 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.8932 -0.5138 -0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6055 -0.2618 2.1369 28 1 3.1263 -0.6444 1.2950 29 1 2.0606 -2.5910 0.3877 30 1 6.3470 -3.3751 1.4255 31 1 1.1980 -4.5456 1.3629 32 1 2.5334 -4.9467 2.4837 33 1 -0.1441 -5.2696 3.1386 34 1 1.1263 -4.9398 4.3570 35 1 0.1888 -3.3638 5.8107 36 1 -1.0035 -2.1825 5.2177 37 1 -1.3589 -3.9247 5.1338 38 1 1.7689 -2.3110 4.5318 39 1 0.8301 -1.2850 3.4036 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261107197.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:02 Heat of formation + Delta-G solvation = 12.728156 kcal Electronic energy + Delta-G solvation = -17169.569336 eV Core-core repulsion = 14726.270726 eV Total energy + Delta-G solvation = -2443.298610 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.70917 -36.16893 -33.87364 -31.82341 -30.03996 -27.61254 -26.64590 -25.95192 -24.20322 -23.12845 -20.77920 -19.32878 -19.01609 -16.56831 -15.51752 -15.17424 -14.54526 -14.42152 -13.94115 -13.68987 -13.43947 -12.92560 -12.68290 -12.29120 -12.22285 -11.81479 -11.51298 -11.36805 -11.12523 -11.01352 -10.78989 -10.68478 -10.43181 -10.36211 -10.12658 -9.97507 -9.78217 -9.65566 -9.05642 -8.66316 -7.83389 -7.15532 -6.22406 -4.22719 3.16489 3.26188 3.31047 4.26139 4.74927 4.98986 5.21742 5.43124 5.52519 5.53594 5.62143 5.73874 5.84743 5.96808 6.02111 6.05053 6.16275 6.18923 6.24065 6.30717 6.34886 6.43539 6.48293 6.55452 6.66682 6.81113 6.81673 6.91019 6.98476 7.04178 7.13511 7.32911 7.64083 7.70443 8.03360 8.38532 8.56481 8.81326 9.40074 10.90287 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.017422 B = 0.014838 C = 0.009672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.762356 B = 1886.543958 C = 2894.349503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 C -0.143 4.143 4 C 0.070 3.930 5 N -0.673 5.673 6 C 0.205 3.795 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.079 3.921 10 N -0.890 5.890 11 Si 0.853 3.147 12 H -0.277 1.277 13 H -0.297 1.297 14 H -0.241 1.241 15 C -0.117 4.117 16 C 0.039 3.961 17 N -0.513 5.513 18 C 0.015 3.985 19 C 0.060 3.940 20 H 0.047 0.953 21 H 0.036 0.964 22 H 0.067 0.933 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.044 0.956 29 H 0.311 0.689 30 H 0.265 0.735 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.036 0.964 35 H 0.022 0.978 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.039 0.961 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.232 2.382 -0.998 9.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.118 4.118 3 C -0.201 4.201 4 C -0.060 4.060 5 N -0.310 5.310 6 C 0.115 3.885 7 C -0.575 4.575 8 H 0.092 0.908 9 C -0.125 4.125 10 N -0.527 5.527 11 Si 0.683 3.317 12 H -0.203 1.203 13 H -0.225 1.225 14 H -0.166 1.166 15 C -0.156 4.156 16 C -0.089 4.089 17 N -0.236 5.236 18 C -0.134 4.134 19 C -0.068 4.068 20 H 0.066 0.934 21 H 0.055 0.945 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.134 0.866 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.130 2.578 -1.227 10.525 hybrid contribution 1.597 -0.569 -0.380 1.738 sum -8.533 2.009 -1.607 8.912 Atomic orbital electron populations 1.21685 0.95105 1.02391 0.99783 1.21171 0.96269 0.95345 0.99040 1.21786 1.00923 0.96421 1.00957 1.21799 0.98951 0.89222 0.95998 1.61236 1.62633 1.02178 1.04913 1.19532 0.92865 0.89395 0.86739 1.21507 0.88858 1.41823 1.05337 0.90841 1.24948 0.94773 0.94402 0.98350 1.69911 1.00865 1.46912 1.34998 0.87549 0.79363 0.79516 0.85282 1.20331 1.22475 1.16606 1.22831 0.97273 0.98468 0.97044 1.23027 0.96419 0.91394 0.98108 1.65381 1.27620 1.05176 1.25432 1.22465 0.98921 1.01618 0.90432 1.23093 0.89764 0.96207 0.97745 0.93398 0.94500 0.91419 0.92363 0.92915 0.93376 0.92857 0.91730 0.93812 0.86591 0.92526 0.92056 0.91338 0.91628 0.94617 0.95967 0.92019 0.92257 0.94235 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.08 37.15 0.34 -1.73 16 2 C -0.10 -1.71 3.10 -90.62 -0.28 -2.00 16 3 C -0.14 -2.13 9.19 37.16 0.34 -1.78 16 4 C 0.07 1.42 4.25 -3.82 -0.02 1.41 16 5 N -0.67 -14.67 5.24 -99.73 -0.52 -15.19 16 6 C 0.20 4.66 0.55 -131.37 -0.07 4.59 16 7 C -0.54 -14.32 7.09 -34.44 -0.24 -14.57 16 8 H 0.07 2.17 7.80 -52.49 -0.41 1.76 16 9 C 0.08 2.17 5.13 -17.82 -0.09 2.08 16 10 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 11 Si 0.85 20.54 23.41 -169.99 -3.98 16.56 16 12 H -0.28 -6.57 7.08 56.52 0.40 -6.17 16 13 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 14 H -0.24 -5.43 4.39 56.52 0.25 -5.19 16 15 C -0.12 -2.53 4.49 -25.35 -0.11 -2.65 16 16 C 0.04 0.73 6.49 -2.19 -0.01 0.71 16 17 N -0.51 -9.65 5.66 -238.22 -1.35 -11.00 16 18 C 0.01 0.23 9.53 60.07 0.57 0.80 16 19 C 0.06 1.24 5.52 -2.18 -0.01 1.23 16 20 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 21 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.07 1.15 7.75 -51.93 -0.40 0.74 16 23 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.29 6.21 -51.93 -0.32 0.96 16 28 H 0.04 1.02 7.11 -51.93 -0.37 0.65 16 29 H 0.31 7.03 3.49 -39.29 -0.14 6.90 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.06 1.31 6.52 -51.93 -0.34 0.97 16 32 H 0.07 1.56 7.07 -51.92 -0.37 1.19 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.04 0.66 7.97 -51.93 -0.41 0.24 16 35 H 0.02 0.34 7.97 -51.93 -0.41 -0.08 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.04 0.85 7.45 -51.93 -0.39 0.47 16 39 H 0.07 1.47 6.16 -51.93 -0.32 1.15 16 LS Contribution 288.37 15.07 4.35 4.35 Total: -1.00 -28.29 288.37 -7.30 -35.59 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.98 Total: 7.22 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 0.41 Total: -11.90 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -1.10 Total: -51.81 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -3.98 Total: 16.56 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.29 -7.30 -35.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107197.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.316 kcal (2) G-P(sol) polarization free energy of solvation -28.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds