Wall clock time and date at job start Mon Mar 30 2020 03:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47307 * 2 1 4 4 C 1.53008 * 109.46952 * 120.00015 * 2 1 3 5 5 N 1.46896 * 109.47315 * 64.99584 * 4 2 1 6 6 C 1.46901 * 110.99839 * 176.50476 * 5 4 2 7 7 C 1.50697 * 110.27230 * 57.25904 * 6 5 4 8 8 H 1.08001 * 119.99968 * 233.23150 * 7 6 5 9 9 C 1.37876 * 120.00191 * 53.23573 * 7 6 5 10 10 N 1.31509 * 120.00104 * 5.15002 * 9 7 6 11 11 Si 1.86801 * 120.00031 * 185.14500 * 9 7 6 12 12 H 1.48500 * 109.47179 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46847 * 119.99881 * 11 9 7 14 14 H 1.48499 * 109.47383 * 240.00116 * 11 9 7 15 15 C 1.54602 * 110.39145 * 179.40336 * 6 5 4 16 16 C 1.54931 * 102.91902 * 140.91680 * 15 6 5 17 17 N 1.48535 * 103.22803 * 322.58403 * 16 15 6 18 18 C 1.46907 * 110.99772 * 159.72460 * 17 16 15 19 19 C 1.47898 * 105.81830 * 39.21080 * 17 16 15 20 20 H 1.09000 * 109.47347 * 180.02562 * 1 2 3 21 21 H 1.09009 * 109.46592 * 300.00388 * 1 2 3 22 22 H 1.09003 * 109.47099 * 60.00067 * 1 2 3 23 23 H 1.09000 * 109.47364 * 239.99445 * 2 1 3 24 24 H 1.09002 * 109.47084 * 180.02562 * 3 2 1 25 25 H 1.08995 * 109.46965 * 299.99658 * 3 2 1 26 26 H 1.09000 * 109.47738 * 60.00122 * 3 2 1 27 27 H 1.09005 * 109.46941 * 304.99735 * 4 2 1 28 28 H 1.09000 * 109.47002 * 185.00313 * 4 2 1 29 29 H 1.00894 * 110.99948 * 52.55298 * 5 4 2 30 30 H 0.97001 * 120.00512 * 179.97438 * 10 9 7 31 31 H 1.08997 * 110.72494 * 259.27637 * 15 6 5 32 32 H 1.08997 * 110.71825 * 22.37874 * 15 6 5 33 33 H 1.09005 * 110.66348 * 204.15131 * 16 15 6 34 34 H 1.09000 * 110.67041 * 81.02426 * 16 15 6 35 35 H 1.09000 * 109.46855 * 302.59985 * 18 17 16 36 36 H 1.08999 * 109.46857 * 182.60498 * 18 17 16 37 37 H 1.08997 * 109.47415 * 62.60585 * 18 17 16 38 38 H 1.09003 * 109.91792 * 94.02019 * 19 17 16 39 39 H 1.09000 * 109.91841 * 215.31170 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6513 -2.1367 1.1906 6 6 2.1955 -2.8800 2.3349 7 6 1.7326 -2.2599 3.6280 8 1 2.4541 -1.9798 4.3812 9 6 0.3880 -2.0503 3.8497 10 7 -0.4973 -2.4826 2.9785 11 14 -0.1763 -1.1523 5.3874 12 1 1.0067 -0.7710 6.2002 13 1 -0.9249 0.0703 5.0000 14 1 -1.0590 -2.0417 6.1842 15 6 1.7658 -4.3635 2.2671 16 6 3.0356 -5.1139 2.7412 17 7 4.1414 -4.3197 2.1473 18 6 5.4060 -4.5688 2.8522 19 6 3.7340 -2.9036 2.2740 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5140 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 3.1300 1.4424 -0.0005 25 1 1.6768 1.9562 -0.8900 26 1 1.6768 1.9564 0.8900 27 1 1.6053 -0.2617 2.1371 28 1 3.1263 -0.6443 1.2953 29 1 1.9385 -2.5546 0.3183 30 1 -1.4433 -2.3355 3.1346 31 1 0.9307 -4.5544 2.9410 32 1 1.5074 -4.6439 1.2459 33 1 3.0454 -6.1341 2.3574 34 1 3.1008 -5.1105 3.8293 35 1 5.2851 -4.3331 3.9095 36 1 6.1887 -3.9405 2.4271 37 1 5.6825 -5.6175 2.7430 38 1 4.1483 -2.4783 3.1881 39 1 4.0801 -2.3388 1.4084 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261107198.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:05 Heat of formation + Delta-G solvation = 1.682510 kcal Electronic energy + Delta-G solvation = -17077.679482 eV Core-core repulsion = 14633.901896 eV Total energy + Delta-G solvation = -2443.777585 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.42662 -35.92197 -33.50925 -31.47857 -29.70733 -27.29450 -26.40934 -25.48548 -24.36106 -22.78204 -20.32399 -19.18368 -18.95748 -16.15911 -15.06019 -14.87828 -14.34474 -14.16976 -13.91941 -13.41890 -13.28381 -12.76224 -12.23109 -12.08480 -11.90819 -11.64977 -11.44865 -10.95861 -10.92323 -10.68585 -10.63514 -10.60069 -10.34147 -10.18074 -10.11744 -9.92499 -9.61391 -9.44985 -8.94658 -8.23784 -7.71037 -6.71119 -5.84044 -3.96832 3.30657 3.40230 3.43076 4.47243 4.85656 5.29953 5.45796 5.58434 5.65326 5.67543 5.83424 5.92689 6.07043 6.16389 6.19713 6.20983 6.31483 6.33290 6.40196 6.46787 6.50116 6.63009 6.69016 6.74649 6.83637 6.93503 7.09866 7.18478 7.26159 7.37595 7.63564 7.76803 7.79070 7.89673 8.28351 8.68771 8.92654 9.23698 9.68930 11.17442 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.017481 B = 0.013050 C = 0.008934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.370012 B = 2145.042598 C = 3133.442166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.095 4.095 3 C -0.143 4.143 4 C 0.085 3.915 5 N -0.638 5.638 6 C 0.246 3.754 7 C -0.528 4.528 8 H 0.049 0.951 9 C 0.091 3.909 10 N -0.832 5.832 11 Si 0.869 3.131 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.286 1.286 15 C -0.088 4.088 16 C 0.035 3.965 17 N -0.527 5.527 18 C 0.019 3.981 19 C 0.009 3.991 20 H 0.074 0.926 21 H 0.046 0.954 22 H 0.028 0.972 23 H 0.054 0.946 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.001 0.999 29 H 0.301 0.699 30 H 0.253 0.747 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.038 0.962 35 H 0.022 0.978 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.035 0.965 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.788 0.926 -3.392 5.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.114 4.114 3 C -0.201 4.201 4 C -0.045 4.045 5 N -0.266 5.266 6 C 0.155 3.845 7 C -0.566 4.566 8 H 0.067 0.933 9 C -0.117 4.117 10 N -0.465 5.465 11 Si 0.697 3.303 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.127 4.127 16 C -0.093 4.093 17 N -0.252 5.252 18 C -0.130 4.130 19 C -0.121 4.121 20 H 0.093 0.907 21 H 0.065 0.935 22 H 0.047 0.953 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.019 0.981 29 H 0.117 0.883 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.041 0.959 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.047 0.882 -3.692 5.548 hybrid contribution 0.640 0.773 1.575 1.867 sum 4.687 1.654 -2.117 5.402 Atomic orbital electron populations 1.21613 0.94691 1.03065 0.99099 1.21152 0.96824 0.94770 0.98661 1.21803 1.00181 0.97156 1.00955 1.21703 0.94939 0.90926 0.96894 1.60597 1.62858 1.00237 1.02867 1.19246 0.84139 0.90708 0.90357 1.20828 0.91850 1.43779 1.00190 0.93306 1.24826 0.96845 0.94904 0.95084 1.70103 1.00504 1.42509 1.33408 0.86937 0.78779 0.80130 0.84481 1.20140 1.21056 1.21232 1.22352 0.95095 0.95716 0.99501 1.23237 0.92480 0.96701 0.96860 1.64727 1.02199 1.06928 1.51299 1.22430 0.93518 1.00800 0.96248 1.23884 1.01609 0.87873 0.98691 0.90664 0.93524 0.95308 0.92763 0.93501 0.93579 0.92931 0.90496 0.98080 0.88318 0.93694 0.90124 0.93711 0.92172 0.94361 0.95921 0.92522 0.92400 0.94623 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 9.08 37.16 0.34 -2.00 16 2 C -0.10 -1.68 3.03 -90.62 -0.27 -1.95 16 3 C -0.14 -2.17 9.19 37.15 0.34 -1.83 16 4 C 0.08 1.77 4.46 -3.82 -0.02 1.75 16 5 N -0.64 -14.25 4.63 -99.75 -0.46 -14.71 16 6 C 0.25 5.73 0.41 -131.40 -0.05 5.68 16 7 C -0.53 -13.72 6.68 -34.44 -0.23 -13.95 16 8 H 0.05 1.32 7.36 -52.49 -0.39 0.93 16 9 C 0.09 2.38 4.82 -17.82 -0.09 2.29 16 10 N -0.83 -22.28 11.66 55.43 0.65 -21.63 16 11 Si 0.87 20.63 29.54 -169.99 -5.02 15.61 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 C -0.09 -2.00 5.90 -24.87 -0.15 -2.14 16 16 C 0.04 0.70 6.56 -1.90 -0.01 0.69 16 17 N -0.53 -10.40 5.55 -238.72 -1.33 -11.73 16 18 C 0.02 0.32 9.40 60.07 0.56 0.89 16 19 C 0.01 0.20 5.50 -2.76 -0.02 0.18 16 20 H 0.07 1.55 7.75 -51.93 -0.40 1.15 16 21 H 0.05 0.91 8.14 -51.92 -0.42 0.48 16 22 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.92 8.13 -51.93 -0.42 0.50 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.83 6.98 -51.93 -0.36 1.47 16 28 H 0.00 0.03 6.53 -51.93 -0.34 -0.31 16 29 H 0.30 6.43 8.58 -39.29 -0.34 6.10 16 30 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 31 H 0.08 2.04 7.00 -51.93 -0.36 1.67 16 32 H 0.04 1.01 7.97 -51.93 -0.41 0.60 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.04 0.79 7.96 -51.93 -0.41 0.37 16 35 H 0.02 0.38 8.00 -51.93 -0.42 -0.04 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.04 0.80 6.98 -51.93 -0.36 0.44 16 39 H 0.05 1.13 6.69 -51.93 -0.35 0.78 16 LS Contribution 301.11 15.07 4.54 4.54 Total: -1.00 -26.21 301.11 -8.30 -34.51 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.08 Total: 3.79 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 0.41 Total: -10.39 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: -1.14 Total: -48.06 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.21 -8.30 -34.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107198.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.190 kcal (2) G-P(sol) polarization free energy of solvation -26.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds