Wall clock time and date at job start Mon Mar 30 2020 03:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47089 * 2 1 4 4 C 1.52992 * 109.46927 * 120.00299 * 2 1 3 5 5 H 1.09007 * 109.46874 * 179.25666 * 4 2 1 6 6 C 1.50698 * 109.47196 * 299.25505 * 4 2 1 7 7 H 1.07997 * 120.00127 * 84.80938 * 6 4 2 8 8 C 1.37884 * 120.00413 * 264.80901 * 6 4 2 9 9 N 1.31509 * 119.99384 * 355.25118 * 8 6 4 10 10 Si 1.86801 * 120.00190 * 175.25644 * 8 6 4 11 11 H 1.48499 * 109.47330 * 89.99879 * 10 8 6 12 12 H 1.48497 * 109.46652 * 210.00071 * 10 8 6 13 13 H 1.48501 * 109.46767 * 329.99619 * 10 8 6 14 14 N 1.46900 * 109.47622 * 59.25953 * 4 2 1 15 15 C 1.46840 * 111.00091 * 54.88598 * 14 4 2 16 16 C 1.53032 * 109.52589 * 185.84244 * 15 14 4 17 17 C 1.53124 * 109.28141 * 300.82104 * 16 15 14 18 18 N 1.46896 * 109.52482 * 177.56001 * 17 16 15 19 19 C 1.53121 * 109.15797 * 57.65105 * 17 16 15 20 20 C 1.46845 * 111.00117 * 179.09741 * 14 4 2 21 21 H 1.09000 * 109.47507 * 300.00075 * 1 2 3 22 22 H 1.09005 * 109.47415 * 59.99509 * 1 2 3 23 23 H 1.09002 * 109.47627 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46796 * 239.99857 * 2 1 3 25 25 H 1.08997 * 109.46665 * 180.47052 * 3 2 1 26 26 H 1.08999 * 109.46825 * 300.46396 * 3 2 1 27 27 H 1.08995 * 109.47129 * 60.46983 * 3 2 1 28 28 H 0.97006 * 120.00028 * 179.97438 * 9 8 6 29 29 H 1.09000 * 109.46246 * 305.85878 * 15 14 4 30 30 H 1.09004 * 109.46745 * 65.82474 * 15 14 4 31 31 H 1.08998 * 109.50419 * 180.87909 * 16 15 14 32 32 H 1.09000 * 109.50387 * 60.76396 * 16 15 14 33 33 H 1.09005 * 109.51764 * 297.75003 * 17 16 15 34 34 H 1.00896 * 111.00126 * 60.31981 * 18 17 16 35 35 H 1.00905 * 110.99715 * 184.27620 * 18 17 16 36 36 H 1.08993 * 109.50372 * 182.40967 * 19 17 16 37 37 H 1.08998 * 109.49960 * 62.29060 * 19 17 16 38 38 H 1.09000 * 109.46488 * 294.17636 * 20 14 4 39 39 H 1.08998 * 109.46503 * 54.14497 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 3.1299 -0.7328 1.2425 6 6 1.5527 -0.0004 2.4796 7 1 0.5724 -0.2151 2.8786 8 6 2.3585 0.9334 3.0960 9 7 3.5864 1.1277 2.6671 10 14 1.7061 1.9221 4.5404 11 1 1.9971 1.2012 5.8056 12 1 2.3640 3.2531 4.5665 13 1 0.2385 2.0980 4.3971 14 7 1.5357 -2.1010 1.2582 15 6 1.8893 -2.7986 0.0154 16 6 1.2269 -4.1780 -0.0031 17 6 1.7022 -4.9835 1.2093 18 7 1.0251 -6.2870 1.2288 19 6 1.3651 -4.2124 2.4884 20 6 2.0236 -2.8319 2.4346 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8932 -0.5138 -0.8900 25 1 3.1299 1.4424 -0.0084 26 1 1.6698 1.9587 -0.8858 27 1 1.6835 1.9539 0.8941 28 1 4.1532 1.7849 3.1005 29 1 1.5419 -2.2175 -0.8388 30 1 2.9717 -2.9148 -0.0407 31 1 1.5022 -4.7017 -0.9186 32 1 0.1439 -4.0622 0.0388 33 1 2.7802 -5.1329 1.1474 34 1 1.2325 -6.8148 0.3943 35 1 1.2696 -6.8090 2.0570 36 1 1.7391 -4.7605 3.3531 37 1 0.2842 -4.0972 2.5696 38 1 3.1053 -2.9479 2.3674 39 1 1.7736 -2.2750 3.3376 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261111864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:39 Heat of formation + Delta-G solvation = -12.685026 kcal Electronic energy + Delta-G solvation = -17073.057266 eV Core-core repulsion = 14628.656658 eV Total energy + Delta-G solvation = -2444.400609 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.63257 -35.93806 -33.12142 -31.99110 -30.18785 -29.20730 -26.05619 -25.79173 -23.32818 -22.41738 -21.27422 -19.15758 -18.32890 -16.06217 -15.43136 -15.30476 -14.83731 -14.28398 -14.06440 -13.69492 -13.27079 -12.77628 -12.63753 -12.03667 -11.83467 -11.51817 -11.26229 -11.11572 -11.00101 -10.79493 -10.67169 -10.52500 -10.30375 -9.88676 -9.82005 -9.77760 -9.41459 -9.34753 -8.65875 -8.54592 -8.39150 -7.02670 -5.98506 -4.00024 3.30471 3.38385 3.42658 4.43054 4.65807 5.00132 5.23825 5.29682 5.42154 5.65540 5.86574 6.03627 6.14083 6.19245 6.24102 6.29088 6.35641 6.39030 6.45340 6.57815 6.67338 6.75390 6.90006 6.91748 6.98711 7.16364 7.18206 7.33447 7.41660 7.52089 7.55582 7.69853 7.73219 7.92316 8.17969 8.35005 8.71301 9.13045 9.62807 11.08098 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029630 B = 0.009227 C = 0.007831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.752208 B = 3033.968987 C = 3574.804576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.078 4.078 3 C -0.119 4.119 4 C 0.206 3.794 5 H 0.030 0.970 6 C -0.490 4.490 7 H 0.060 0.940 8 C 0.065 3.935 9 N -0.891 5.891 10 Si 0.885 3.115 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.273 1.273 14 N -0.530 5.530 15 C 0.050 3.950 16 C -0.104 4.104 17 C 0.090 3.910 18 N -0.847 5.847 19 C -0.108 4.108 20 C 0.073 3.927 21 H 0.058 0.942 22 H 0.018 0.982 23 H 0.049 0.951 24 H 0.029 0.971 25 H 0.048 0.952 26 H 0.015 0.985 27 H 0.065 0.935 28 H 0.259 0.741 29 H 0.074 0.926 30 H 0.015 0.985 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.025 0.975 34 H 0.334 0.666 35 H 0.336 0.664 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.014 0.986 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.161 -8.389 -3.560 9.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.098 4.098 3 C -0.176 4.176 4 C 0.100 3.900 5 H 0.048 0.952 6 C -0.529 4.529 7 H 0.078 0.922 8 C -0.137 4.137 9 N -0.530 5.530 10 Si 0.713 3.287 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.198 1.198 14 N -0.255 5.255 15 C -0.079 4.079 16 C -0.142 4.142 17 C -0.021 4.021 18 N -0.376 5.376 19 C -0.147 4.147 20 C -0.056 4.056 21 H 0.077 0.923 22 H 0.037 0.963 23 H 0.068 0.932 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.035 0.965 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.043 0.957 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.032 0.968 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.176 -7.818 -3.478 9.127 hybrid contribution 1.715 0.128 0.718 1.864 sum -1.461 -7.689 -2.760 8.299 Atomic orbital electron populations 1.21595 0.96403 1.00642 0.99399 1.21168 0.95291 0.96188 0.97114 1.21554 1.00542 0.96166 0.99377 1.19474 0.94737 0.82298 0.93475 0.95229 1.20928 1.01502 1.20313 1.10153 0.92190 1.24928 0.94654 0.97371 0.96734 1.69946 1.06710 1.34648 1.41659 0.86705 0.79290 0.79669 0.83033 1.20883 1.21383 1.19783 1.62100 1.60254 1.03674 0.99478 1.22078 0.96362 0.93898 0.95541 1.21573 1.01911 0.95099 0.95637 1.21435 0.94359 0.89045 0.97261 1.58784 1.65886 1.05986 1.06963 1.21659 1.02256 0.95756 0.94981 1.21784 0.95152 0.92343 0.96299 0.92266 0.96251 0.93159 0.95228 0.93324 0.96547 0.91576 0.93115 0.90801 0.96708 0.93216 0.90720 0.95703 0.85420 0.85230 0.93103 0.90766 0.96795 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 8.74 37.16 0.32 -2.20 16 2 C -0.08 -1.72 2.22 -90.62 -0.20 -1.92 16 3 C -0.12 -2.68 8.20 37.16 0.30 -2.37 16 4 C 0.21 4.94 1.47 -68.87 -0.10 4.84 16 5 H 0.03 0.82 7.24 -51.93 -0.38 0.45 16 6 C -0.49 -12.70 5.10 -34.44 -0.18 -12.88 16 7 H 0.06 1.61 7.75 -52.49 -0.41 1.20 16 8 C 0.06 1.72 4.17 -17.82 -0.07 1.64 16 9 N -0.89 -24.58 12.12 55.43 0.67 -23.91 16 10 Si 0.88 20.89 29.54 -169.99 -5.02 15.87 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 14 N -0.53 -11.19 3.73 -228.09 -0.85 -12.04 16 15 C 0.05 0.93 4.99 -3.84 -0.02 0.91 16 16 C -0.10 -1.63 5.67 -26.65 -0.15 -1.79 16 17 C 0.09 1.35 3.31 -67.59 -0.22 1.12 16 18 N -0.85 -10.57 9.25 -4.56 -0.04 -10.61 16 19 C -0.11 -1.81 5.64 -26.65 -0.15 -1.96 16 20 C 0.07 1.49 5.28 -3.83 -0.02 1.47 16 21 H 0.06 1.30 7.19 -51.93 -0.37 0.93 16 22 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 23 H 0.05 1.01 7.46 -51.93 -0.39 0.62 16 24 H 0.03 0.62 6.25 -51.93 -0.32 0.30 16 25 H 0.05 1.16 8.08 -51.93 -0.42 0.74 16 26 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 1.62 6.38 -51.93 -0.33 1.29 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.07 1.36 5.85 -51.93 -0.30 1.06 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.33 3.55 9.04 -39.29 -0.36 3.20 16 35 H 0.34 3.66 9.00 -39.29 -0.35 3.31 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.09 1.97 6.92 -51.93 -0.36 1.61 16 LS Contribution 293.51 15.07 4.42 4.42 Total: -1.00 -26.75 293.51 -8.24 -34.99 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.93 Total: 4.41 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -0.49 Total: -13.13 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.22 Total: -46.57 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -26.75 -8.24 -34.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.303 kcal (2) G-P(sol) polarization free energy of solvation -26.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds