Wall clock time and date at job start Mon Mar 30 2020 03:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47089 * 2 1 4 4 C 1.52992 * 109.46927 * 120.00299 * 2 1 3 5 5 H 1.09007 * 109.46874 * 179.25666 * 4 2 1 6 6 C 1.50698 * 109.47196 * 299.25505 * 4 2 1 7 7 H 1.07997 * 120.00127 * 84.80938 * 6 4 2 8 8 C 1.37884 * 120.00413 * 264.80901 * 6 4 2 9 9 N 1.31509 * 119.99384 * 355.25118 * 8 6 4 10 10 Si 1.86801 * 120.00190 * 175.25644 * 8 6 4 11 11 H 1.48499 * 109.47330 * 89.99879 * 10 8 6 12 12 H 1.48497 * 109.46652 * 210.00071 * 10 8 6 13 13 H 1.48501 * 109.46767 * 329.99619 * 10 8 6 14 14 N 1.46900 * 109.47622 * 59.25953 * 4 2 1 15 15 C 1.46840 * 111.00091 * 54.88598 * 14 4 2 16 16 C 1.53032 * 109.52589 * 185.84244 * 15 14 4 17 17 C 1.53124 * 109.28141 * 300.82104 * 16 15 14 18 18 N 1.46896 * 109.52482 * 177.56001 * 17 16 15 19 19 C 1.53121 * 109.15797 * 57.65105 * 17 16 15 20 20 C 1.46845 * 111.00117 * 179.09741 * 14 4 2 21 21 H 1.09000 * 109.47507 * 300.00075 * 1 2 3 22 22 H 1.09005 * 109.47415 * 59.99509 * 1 2 3 23 23 H 1.09002 * 109.47627 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46796 * 239.99857 * 2 1 3 25 25 H 1.08997 * 109.46665 * 180.47052 * 3 2 1 26 26 H 1.08999 * 109.46825 * 300.46396 * 3 2 1 27 27 H 1.08995 * 109.47129 * 60.46983 * 3 2 1 28 28 H 0.97006 * 120.00028 * 179.97438 * 9 8 6 29 29 H 1.09000 * 109.46246 * 305.85878 * 15 14 4 30 30 H 1.09004 * 109.46745 * 65.82474 * 15 14 4 31 31 H 1.08998 * 109.50419 * 180.87909 * 16 15 14 32 32 H 1.09000 * 109.50387 * 60.76396 * 16 15 14 33 33 H 1.09005 * 109.51764 * 297.75003 * 17 16 15 34 34 H 1.00896 * 111.00126 * 60.31981 * 18 17 16 35 35 H 1.00905 * 110.99715 * 184.27620 * 18 17 16 36 36 H 1.08993 * 109.50372 * 182.40967 * 19 17 16 37 37 H 1.08998 * 109.49960 * 62.29060 * 19 17 16 38 38 H 1.09000 * 109.46488 * 294.17636 * 20 14 4 39 39 H 1.08998 * 109.46503 * 54.14497 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 3.1299 -0.7328 1.2425 6 6 1.5527 -0.0004 2.4796 7 1 0.5724 -0.2151 2.8786 8 6 2.3585 0.9334 3.0960 9 7 3.5864 1.1277 2.6671 10 14 1.7061 1.9221 4.5404 11 1 1.9971 1.2012 5.8056 12 1 2.3640 3.2531 4.5665 13 1 0.2385 2.0980 4.3971 14 7 1.5357 -2.1010 1.2582 15 6 1.8893 -2.7986 0.0154 16 6 1.2269 -4.1780 -0.0031 17 6 1.7022 -4.9835 1.2093 18 7 1.0251 -6.2870 1.2288 19 6 1.3651 -4.2124 2.4884 20 6 2.0236 -2.8319 2.4346 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8932 -0.5138 -0.8900 25 1 3.1299 1.4424 -0.0084 26 1 1.6698 1.9587 -0.8858 27 1 1.6835 1.9539 0.8941 28 1 4.1532 1.7849 3.1005 29 1 1.5419 -2.2175 -0.8388 30 1 2.9717 -2.9148 -0.0407 31 1 1.5022 -4.7017 -0.9186 32 1 0.1439 -4.0622 0.0388 33 1 2.7802 -5.1329 1.1474 34 1 1.2325 -6.8148 0.3943 35 1 1.2696 -6.8090 2.0570 36 1 1.7391 -4.7605 3.3531 37 1 0.2842 -4.0972 2.5696 38 1 3.1053 -2.9479 2.3674 39 1 1.7736 -2.2750 3.3376 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261111864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:39 Heat of formation + Delta-G solvation = -30.469801 kcal Electronic energy + Delta-G solvation = -17073.828472 eV Core-core repulsion = 14628.656658 eV Total energy + Delta-G solvation = -2445.171814 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.19840 -37.52035 -34.64333 -33.94830 -31.67298 -30.63497 -27.91440 -27.56579 -25.06660 -23.91162 -22.86231 -20.64134 -20.09011 -18.06669 -17.09027 -16.41197 -16.30649 -15.90086 -15.69684 -15.44530 -14.86710 -14.36925 -14.30768 -13.63492 -13.54736 -13.22138 -12.90128 -12.83718 -12.75100 -12.49637 -12.32779 -12.03613 -11.97532 -11.78092 -11.57156 -11.28169 -11.20563 -11.06868 -10.50493 -10.43529 -9.57728 -8.81027 -8.03202 -6.09808 1.39914 1.43386 1.52108 2.45459 3.19071 3.43484 3.63211 3.93460 4.01254 4.37008 4.41250 4.44845 4.53442 4.61322 4.67778 4.72797 4.83119 4.96880 4.98476 5.05618 5.11923 5.18199 5.27786 5.29275 5.32471 5.41603 5.48034 5.59441 5.68429 5.79794 5.87965 5.89616 6.28807 6.33429 6.49465 6.68628 6.88867 7.08263 7.55784 9.02214 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029630 B = 0.009227 C = 0.007831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.752208 B = 3033.968987 C = 3574.804576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.079 4.079 3 C -0.109 4.109 4 C 0.212 3.788 5 H -0.015 1.015 6 C -0.489 4.489 7 H 0.049 0.951 8 C 0.024 3.976 9 N -0.918 5.918 10 Si 0.937 3.063 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.269 1.269 14 N -0.532 5.532 15 C 0.050 3.950 16 C -0.095 4.095 17 C 0.096 3.904 18 N -0.845 5.845 19 C -0.098 4.098 20 C 0.076 3.924 21 H 0.038 0.962 22 H 0.045 0.955 23 H 0.053 0.947 24 H 0.043 0.957 25 H 0.025 0.975 26 H 0.045 0.955 27 H 0.040 0.960 28 H 0.257 0.743 29 H 0.077 0.923 30 H 0.005 0.995 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.349 0.651 35 H 0.347 0.653 36 H 0.068 0.932 37 H 0.066 0.934 38 H -0.003 1.003 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.368 -9.686 -4.382 11.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.167 4.167 4 C 0.105 3.895 5 H 0.003 0.997 6 C -0.528 4.528 7 H 0.067 0.933 8 C -0.175 4.175 9 N -0.558 5.558 10 Si 0.764 3.236 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.194 1.194 14 N -0.257 5.257 15 C -0.079 4.079 16 C -0.134 4.134 17 C -0.015 4.015 18 N -0.376 5.376 19 C -0.136 4.136 20 C -0.053 4.053 21 H 0.058 0.942 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.023 0.977 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.015 0.985 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.398 -9.142 -4.303 11.020 hybrid contribution 2.104 0.488 0.952 2.360 sum -2.295 -8.654 -3.352 9.560 Atomic orbital electron populations 1.21456 0.94752 1.00936 0.99688 1.21143 0.96563 0.95617 0.96506 1.21434 0.99036 0.96686 0.99513 1.19281 0.92049 0.84229 0.93914 0.99723 1.21029 1.00775 1.20265 1.10716 0.93311 1.25495 0.94814 0.98317 0.98867 1.70069 1.07637 1.35282 1.42845 0.85877 0.78824 0.78381 0.80516 1.20711 1.21297 1.19368 1.62083 1.59832 1.02809 1.00948 1.22152 0.96099 0.95526 0.94099 1.21494 1.01077 0.93483 0.97307 1.21242 0.94468 0.90103 0.95696 1.58665 1.65320 1.05221 1.08382 1.21531 1.01243 0.93780 0.97059 1.21728 0.94456 0.94198 0.94953 0.94247 0.93590 0.92831 0.93850 0.95540 0.93574 0.94042 0.93399 0.90490 0.97715 0.90504 0.91296 0.95810 0.83782 0.83938 0.91308 0.91490 0.98521 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.37 8.74 71.98 0.63 -3.74 16 2 C -0.08 -3.44 2.22 -10.80 -0.02 -3.47 16 3 C -0.11 -4.90 8.20 71.98 0.59 -4.31 16 4 C 0.21 10.39 1.47 44.17 0.07 10.46 16 5 H -0.02 -0.87 7.24 -2.38 -0.02 -0.89 16 6 C -0.49 -25.94 5.10 25.60 0.13 -25.81 16 7 H 0.05 2.66 7.75 -2.91 -0.02 2.64 16 8 C 0.02 1.30 4.17 84.66 0.35 1.65 16 9 N -0.92 -52.29 12.12 21.45 0.26 -52.03 16 10 Si 0.94 43.55 29.54 68.60 2.03 45.58 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 14 N -0.53 -22.55 3.73 -875.54 -3.27 -25.82 16 15 C 0.05 1.80 4.99 86.33 0.43 2.23 16 16 C -0.10 -2.76 5.67 30.65 0.17 -2.58 16 17 C 0.10 2.66 3.31 45.00 0.15 2.81 16 18 N -0.84 -18.26 9.25 -168.34 -1.56 -19.82 16 19 C -0.10 -3.14 5.64 30.65 0.17 -2.97 16 20 C 0.08 3.13 5.28 86.33 0.46 3.58 16 21 H 0.04 1.69 7.19 -2.39 -0.02 1.67 16 22 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 23 H 0.05 2.05 7.46 -2.39 -0.02 2.03 16 24 H 0.04 1.77 6.25 -2.39 -0.01 1.76 16 25 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 26 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.04 2.04 6.38 -2.39 -0.02 2.03 16 28 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 29 H 0.08 2.70 5.85 -2.39 -0.01 2.69 16 30 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.35 6.10 9.04 -89.70 -0.81 5.28 16 35 H 0.35 6.41 9.00 -89.69 -0.81 5.61 16 36 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.06 2.77 6.92 -2.39 -0.02 2.75 16 Total: -1.00 -58.30 293.51 -0.01 -58.31 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -0.60 Total: 15.94 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: 3.13 Total: -22.16 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -4.56 Total: -97.67 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -58.30 -0.01 -58.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.839 kcal (2) G-P(sol) polarization free energy of solvation -58.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds