Wall clock time and date at job start Mon Mar 30 2020 03:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46974 * 2 1 4 4 C 1.53001 * 109.47222 * 119.99492 * 2 1 3 5 5 H 1.09006 * 109.46756 * 56.99617 * 4 2 1 6 6 C 1.50696 * 109.47361 * 296.99838 * 4 2 1 7 7 H 1.07998 * 120.00192 * 244.78898 * 6 4 2 8 8 C 1.37877 * 120.00190 * 64.78291 * 6 4 2 9 9 N 1.31516 * 119.99862 * 22.52706 * 8 6 4 10 10 Si 1.86803 * 120.00099 * 202.52425 * 8 6 4 11 11 H 1.48500 * 109.47166 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46872 * 120.00333 * 10 8 6 13 13 H 1.48498 * 109.47140 * 240.00169 * 10 8 6 14 14 N 1.46899 * 109.47182 * 176.99401 * 4 2 1 15 15 C 1.46842 * 110.99856 * 305.43048 * 14 4 2 16 16 C 1.53044 * 109.52264 * 174.16188 * 15 14 4 17 17 C 1.53122 * 109.27645 * 59.17795 * 16 15 14 18 18 N 1.46898 * 109.52120 * 182.44342 * 17 16 15 19 19 C 1.53115 * 109.16036 * 302.34635 * 17 16 15 20 20 C 1.46850 * 110.99571 * 181.22478 * 14 4 2 21 21 H 1.09004 * 109.46991 * 68.28982 * 1 2 3 22 22 H 1.09002 * 109.46791 * 308.29118 * 1 2 3 23 23 H 1.08992 * 109.47242 * 188.29213 * 1 2 3 24 24 H 1.08994 * 109.47512 * 239.99861 * 2 1 3 25 25 H 1.08997 * 109.47065 * 304.64035 * 3 2 1 26 26 H 1.08999 * 109.47523 * 64.64702 * 3 2 1 27 27 H 1.09007 * 109.46862 * 184.64523 * 3 2 1 28 28 H 0.96999 * 119.99841 * 180.02562 * 9 8 6 29 29 H 1.09001 * 109.46679 * 294.17372 * 15 14 4 30 30 H 1.08997 * 109.46198 * 54.14911 * 15 14 4 31 31 H 1.09007 * 109.49864 * 299.24424 * 16 15 14 32 32 H 1.08995 * 109.50274 * 179.12140 * 16 15 14 33 33 H 1.08996 * 109.52049 * 62.25389 * 17 16 15 34 34 H 1.00907 * 111.00077 * 299.68424 * 18 17 16 35 35 H 1.00903 * 111.00185 * 63.63443 * 18 17 16 36 36 H 1.08998 * 109.50803 * 297.71484 * 19 17 16 37 37 H 1.09003 * 109.50010 * 177.59012 * 19 17 16 38 38 H 1.09004 * 109.46297 * 305.85065 * 20 14 4 39 39 H 1.08993 * 109.46439 * 65.82359 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 1.2493 5 1 1.6334 -1.7321 1.2767 6 6 1.5994 0.0310 2.4786 7 1 2.3344 0.4894 3.1236 8 6 0.2579 0.1340 2.7798 9 7 -0.5935 -0.7455 2.2989 10 14 -0.3503 1.5228 3.8711 11 1 0.7982 2.3713 4.2788 12 1 -1.3327 2.3469 3.1221 13 1 -1.0000 0.9545 5.0795 14 7 3.5073 -0.7844 1.2135 15 6 3.9772 -1.3976 -0.0352 16 6 5.5040 -1.3151 -0.1025 17 6 6.1033 -2.0441 1.1033 18 7 7.5666 -1.9183 1.0754 19 6 5.5603 -1.4173 2.3904 20 6 4.0319 -1.4970 2.3854 21 1 -0.3633 0.3802 -0.9548 22 1 -0.3633 0.6368 0.8066 23 1 -0.3633 -1.0168 0.1482 24 1 1.8934 -0.5138 -0.8899 25 1 1.6104 1.9798 -0.8455 26 1 1.7463 1.9318 0.9287 27 1 3.1269 1.4437 -0.0832 28 1 -1.5373 -0.6727 2.5106 29 1 3.6684 -2.4426 -0.0654 30 1 3.5471 -0.8672 -0.8847 31 1 5.8129 -0.2698 -0.0862 32 1 5.8535 -1.7843 -1.0221 33 1 5.8266 -3.0977 1.0663 34 1 7.9486 -2.3250 0.2347 35 1 7.8485 -0.9541 1.1709 36 1 5.8701 -0.3737 2.4458 37 1 5.9501 -1.9596 3.2518 38 1 3.6415 -1.0386 3.2941 39 1 3.7228 -2.5413 2.3439 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261111865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:42 Heat of formation + Delta-G solvation = 5.177721 kcal Electronic energy + Delta-G solvation = -17144.692950 eV Core-core repulsion = 14701.066928 eV Total energy + Delta-G solvation = -2443.626022 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.77174 -36.15246 -33.40645 -31.70201 -30.23151 -29.24201 -26.17240 -25.63756 -23.32277 -22.42575 -21.31983 -19.42951 -18.42109 -16.02178 -15.77267 -15.46727 -14.45405 -14.16819 -13.88702 -13.72692 -13.31489 -13.15681 -12.57762 -12.16661 -11.90654 -11.60227 -11.33278 -11.19931 -10.79407 -10.71909 -10.62851 -10.57531 -10.45705 -10.00654 -9.92464 -9.77986 -9.45663 -9.38678 -8.85641 -8.46572 -7.84193 -7.11003 -6.07035 -3.92488 3.29097 3.39643 3.45043 4.42520 4.70745 4.91876 5.21122 5.22884 5.25616 5.55414 5.74676 5.94134 6.05585 6.10169 6.22526 6.28683 6.31860 6.41343 6.46772 6.52331 6.56863 6.79538 6.80681 6.86198 6.99976 7.25288 7.25884 7.31382 7.42855 7.50266 7.53948 7.72645 7.82040 8.05407 8.15227 8.27513 8.65179 9.05640 9.60145 10.98754 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.035056 B = 0.008708 C = 0.007788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.534246 B = 3214.647056 C = 3594.509170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.078 4.078 3 C -0.121 4.121 4 C 0.218 3.782 5 H 0.006 0.994 6 C -0.504 4.504 7 H 0.063 0.937 8 C 0.070 3.930 9 N -0.870 5.870 10 Si 0.872 3.128 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.287 1.287 14 N -0.529 5.529 15 C 0.053 3.947 16 C -0.145 4.145 17 C 0.089 3.911 18 N -0.847 5.847 19 C -0.106 4.106 20 C 0.068 3.932 21 H -0.004 1.004 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.027 0.973 25 H 0.017 0.983 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.259 0.741 29 H 0.018 0.982 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.334 0.666 35 H 0.337 0.663 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.853 -0.641 -4.061 9.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.097 4.097 3 C -0.178 4.178 4 C 0.112 3.888 5 H 0.024 0.976 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.132 4.132 9 N -0.508 5.508 10 Si 0.699 3.301 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.214 1.214 14 N -0.254 5.254 15 C -0.076 4.076 16 C -0.185 4.185 17 C -0.023 4.023 18 N -0.374 5.374 19 C -0.145 4.145 20 C -0.061 4.061 21 H 0.015 0.985 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.046 0.954 25 H 0.036 0.964 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.036 0.964 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 8.831 -0.678 -3.367 9.476 hybrid contribution -0.982 0.487 -0.467 1.191 sum 7.850 -0.190 -3.834 8.738 Atomic orbital electron populations 1.22127 0.94872 1.03353 0.97309 1.21269 0.96073 0.95803 0.96567 1.21591 0.99415 0.96792 1.00009 1.19333 0.80305 0.95148 0.94063 0.97609 1.20901 0.91449 1.33433 1.08409 0.91916 1.24750 0.97022 0.95707 0.95698 1.70267 1.03279 1.32268 1.44998 0.86880 0.79021 0.83785 0.80410 1.19574 1.20852 1.21399 1.61987 1.13092 1.50745 0.99555 1.22022 0.93553 0.96699 0.95358 1.22399 0.97288 1.00987 0.97795 1.21540 0.86257 0.99278 0.95187 1.59001 1.10141 1.23622 1.44677 1.21630 0.96151 1.00654 0.96042 1.21893 0.92344 0.95813 0.96084 0.98476 0.90898 0.91727 0.95441 0.96366 0.91827 0.93844 0.93079 0.96385 0.90870 0.91645 0.92968 0.90982 0.85416 0.85038 0.91776 0.91942 0.89455 0.96414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.82 7.40 37.16 0.28 -2.55 16 2 C -0.08 -1.76 2.30 -90.62 -0.21 -1.97 16 3 C -0.12 -2.57 8.80 37.16 0.33 -2.24 16 4 C 0.22 5.23 1.42 -68.87 -0.10 5.13 16 5 H 0.01 0.17 8.02 -51.93 -0.42 -0.24 16 6 C -0.50 -13.09 6.10 -34.44 -0.21 -13.30 16 7 H 0.06 1.68 7.09 -52.49 -0.37 1.30 16 8 C 0.07 1.85 3.36 -17.82 -0.06 1.79 16 9 N -0.87 -23.56 9.69 55.43 0.54 -23.02 16 10 Si 0.87 20.60 29.59 -169.99 -5.03 15.57 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 N -0.53 -10.93 3.97 -228.08 -0.91 -11.84 16 15 C 0.05 0.95 5.11 -3.83 -0.02 0.93 16 16 C -0.14 -2.12 5.67 -26.65 -0.15 -2.27 16 17 C 0.09 1.27 3.32 -67.59 -0.22 1.05 16 18 N -0.85 -10.22 9.26 -4.56 -0.04 -10.27 16 19 C -0.11 -1.70 5.64 -26.65 -0.15 -1.86 16 20 C 0.07 1.32 5.27 -3.83 -0.02 1.30 16 21 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 22 H 0.07 1.87 5.13 -51.93 -0.27 1.60 16 23 H 0.06 1.63 7.00 -51.93 -0.36 1.27 16 24 H 0.03 0.59 6.03 -51.93 -0.31 0.28 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 1.46 6.96 -51.93 -0.36 1.10 16 27 H 0.04 0.88 7.83 -51.93 -0.41 0.47 16 28 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 1.34 5.81 -51.93 -0.30 1.04 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.33 3.43 9.04 -39.29 -0.36 3.07 16 35 H 0.34 3.78 8.98 -39.29 -0.35 3.43 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.09 1.86 6.47 -51.93 -0.34 1.53 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 288.16 15.07 4.34 4.34 Total: -1.00 -26.34 288.16 -8.42 -34.76 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.79 Total: 4.43 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -0.54 Total: -13.99 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -0.41 Total: -45.12 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.34 -8.42 -34.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.942 kcal (2) G-P(sol) polarization free energy of solvation -26.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds