Wall clock time and date at job start Mon Mar 30 2020 03:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46974 * 2 1 4 4 C 1.53001 * 109.47222 * 119.99492 * 2 1 3 5 5 H 1.09006 * 109.46756 * 56.99617 * 4 2 1 6 6 C 1.50696 * 109.47361 * 296.99838 * 4 2 1 7 7 H 1.07998 * 120.00192 * 244.78898 * 6 4 2 8 8 C 1.37877 * 120.00190 * 64.78291 * 6 4 2 9 9 N 1.31516 * 119.99862 * 22.52706 * 8 6 4 10 10 Si 1.86803 * 120.00099 * 202.52425 * 8 6 4 11 11 H 1.48500 * 109.47166 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46872 * 120.00333 * 10 8 6 13 13 H 1.48498 * 109.47140 * 240.00169 * 10 8 6 14 14 N 1.46899 * 109.47182 * 176.99401 * 4 2 1 15 15 C 1.46842 * 110.99856 * 305.43048 * 14 4 2 16 16 C 1.53044 * 109.52264 * 174.16188 * 15 14 4 17 17 C 1.53122 * 109.27645 * 59.17795 * 16 15 14 18 18 N 1.46898 * 109.52120 * 182.44342 * 17 16 15 19 19 C 1.53115 * 109.16036 * 302.34635 * 17 16 15 20 20 C 1.46850 * 110.99571 * 181.22478 * 14 4 2 21 21 H 1.09004 * 109.46991 * 68.28982 * 1 2 3 22 22 H 1.09002 * 109.46791 * 308.29118 * 1 2 3 23 23 H 1.08992 * 109.47242 * 188.29213 * 1 2 3 24 24 H 1.08994 * 109.47512 * 239.99861 * 2 1 3 25 25 H 1.08997 * 109.47065 * 304.64035 * 3 2 1 26 26 H 1.08999 * 109.47523 * 64.64702 * 3 2 1 27 27 H 1.09007 * 109.46862 * 184.64523 * 3 2 1 28 28 H 0.96999 * 119.99841 * 180.02562 * 9 8 6 29 29 H 1.09001 * 109.46679 * 294.17372 * 15 14 4 30 30 H 1.08997 * 109.46198 * 54.14911 * 15 14 4 31 31 H 1.09007 * 109.49864 * 299.24424 * 16 15 14 32 32 H 1.08995 * 109.50274 * 179.12140 * 16 15 14 33 33 H 1.08996 * 109.52049 * 62.25389 * 17 16 15 34 34 H 1.00907 * 111.00077 * 299.68424 * 18 17 16 35 35 H 1.00903 * 111.00185 * 63.63443 * 18 17 16 36 36 H 1.08998 * 109.50803 * 297.71484 * 19 17 16 37 37 H 1.09003 * 109.50010 * 177.59012 * 19 17 16 38 38 H 1.09004 * 109.46297 * 305.85065 * 20 14 4 39 39 H 1.08993 * 109.46439 * 65.82359 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 1.2493 5 1 1.6334 -1.7321 1.2767 6 6 1.5994 0.0310 2.4786 7 1 2.3344 0.4894 3.1236 8 6 0.2579 0.1340 2.7798 9 7 -0.5935 -0.7455 2.2989 10 14 -0.3503 1.5228 3.8711 11 1 0.7982 2.3713 4.2788 12 1 -1.3327 2.3469 3.1221 13 1 -1.0000 0.9545 5.0795 14 7 3.5073 -0.7844 1.2135 15 6 3.9772 -1.3976 -0.0352 16 6 5.5040 -1.3151 -0.1025 17 6 6.1033 -2.0441 1.1033 18 7 7.5666 -1.9183 1.0754 19 6 5.5603 -1.4173 2.3904 20 6 4.0319 -1.4970 2.3854 21 1 -0.3633 0.3802 -0.9548 22 1 -0.3633 0.6368 0.8066 23 1 -0.3633 -1.0168 0.1482 24 1 1.8934 -0.5138 -0.8899 25 1 1.6104 1.9798 -0.8455 26 1 1.7463 1.9318 0.9287 27 1 3.1269 1.4437 -0.0832 28 1 -1.5373 -0.6727 2.5106 29 1 3.6684 -2.4426 -0.0654 30 1 3.5471 -0.8672 -0.8847 31 1 5.8129 -0.2698 -0.0862 32 1 5.8535 -1.7843 -1.0221 33 1 5.8266 -3.0977 1.0663 34 1 7.9486 -2.3250 0.2347 35 1 7.8485 -0.9541 1.1709 36 1 5.8701 -0.3737 2.4458 37 1 5.9501 -1.9596 3.2518 38 1 3.6415 -1.0386 3.2941 39 1 3.7228 -2.5413 2.3439 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261111865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:41 Heat of formation + Delta-G solvation = -12.277677 kcal Electronic energy + Delta-G solvation = -17145.449873 eV Core-core repulsion = 14701.066928 eV Total energy + Delta-G solvation = -2444.382945 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.29820 -37.75494 -34.94319 -33.60115 -31.66508 -30.65892 -27.99891 -27.45060 -25.01630 -23.88258 -22.88968 -20.82333 -20.21744 -18.02808 -17.25197 -16.69636 -16.23979 -15.76019 -15.58259 -15.15619 -14.79134 -14.66423 -14.18060 -13.85348 -13.60241 -13.20194 -13.01944 -12.91329 -12.59356 -12.46543 -12.22003 -12.11491 -11.98733 -11.78982 -11.63449 -11.43860 -11.30843 -11.05441 -10.69783 -9.85467 -9.52131 -8.85545 -8.10337 -6.00773 1.38532 1.45148 1.54465 2.45790 3.15527 3.34850 3.66178 3.93846 3.99297 4.29928 4.37561 4.44562 4.51169 4.61657 4.66085 4.72530 4.83371 4.90953 5.00214 5.06654 5.07954 5.16459 5.22401 5.27712 5.36803 5.44141 5.47737 5.56217 5.63290 5.82359 5.89133 6.08334 6.26548 6.28772 6.47082 6.68149 6.84085 7.02399 7.54418 8.94969 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.035056 B = 0.008708 C = 0.007788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.534246 B = 3214.647056 C = 3594.509170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.078 4.078 3 C -0.109 4.109 4 C 0.225 3.775 5 H -0.040 1.040 6 C -0.511 4.511 7 H 0.051 0.949 8 C 0.035 3.965 9 N -0.893 5.893 10 Si 0.924 3.076 11 H -0.270 1.270 12 H -0.279 1.279 13 H -0.288 1.288 14 N -0.530 5.530 15 C 0.050 3.950 16 C -0.133 4.133 17 C 0.097 3.903 18 N -0.843 5.843 19 C -0.096 4.096 20 C 0.069 3.931 21 H 0.018 0.982 22 H 0.052 0.948 23 H 0.040 0.960 24 H 0.041 0.959 25 H 0.039 0.961 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.259 0.741 29 H 0.008 0.992 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.349 0.651 35 H 0.346 0.654 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.526 0.160 -5.016 11.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.167 4.167 4 C 0.118 3.882 5 H -0.023 1.023 6 C -0.549 4.549 7 H 0.069 0.931 8 C -0.165 4.165 9 N -0.532 5.532 10 Si 0.751 3.249 11 H -0.194 1.194 12 H -0.204 1.204 13 H -0.214 1.214 14 N -0.254 5.254 15 C -0.079 4.079 16 C -0.173 4.173 17 C -0.015 4.015 18 N -0.372 5.372 19 C -0.134 4.134 20 C -0.060 4.060 21 H 0.037 0.963 22 H 0.071 0.929 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.026 0.974 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.162 0.838 35 H 0.159 0.841 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 10.532 0.127 -4.329 11.387 hybrid contribution -1.492 0.182 -0.165 1.512 sum 9.040 0.309 -4.494 10.100 Atomic orbital electron populations 1.21947 0.95720 1.01468 0.97610 1.21226 0.95327 0.96889 0.96254 1.21452 0.99998 0.95444 0.99780 1.19121 0.82394 0.92450 0.94249 1.02299 1.21019 0.91401 1.33420 1.09064 0.93095 1.25284 0.97192 0.97068 0.96959 1.70369 1.03360 1.33259 1.46209 0.86056 0.78450 0.81474 0.78947 1.19432 1.20445 1.21444 1.61984 1.10885 1.51443 1.01112 1.22120 0.96206 0.95771 0.93757 1.22338 0.94231 1.01544 0.99196 1.21340 0.87716 0.98583 0.93867 1.58904 1.08208 1.24429 1.45700 1.21503 0.93087 1.01117 0.97705 1.21850 0.94997 0.94391 0.94736 0.96264 0.92927 0.94109 0.94037 0.94176 0.93966 0.92943 0.93121 0.97400 0.90919 0.91353 0.90311 0.91597 0.83782 0.84133 0.91639 0.91104 0.92041 0.97881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.20 7.40 71.98 0.53 -4.67 16 2 C -0.08 -3.49 2.30 -10.79 -0.02 -3.51 16 3 C -0.11 -4.48 8.80 71.98 0.63 -3.85 16 4 C 0.22 11.05 1.42 44.17 0.06 11.11 16 5 H -0.04 -2.33 8.02 -2.38 -0.02 -2.35 16 6 C -0.51 -27.16 6.10 25.60 0.16 -27.00 16 7 H 0.05 2.79 7.09 -2.91 -0.02 2.76 16 8 C 0.04 1.89 3.36 84.65 0.28 2.17 16 9 N -0.89 -49.60 9.69 21.45 0.21 -49.39 16 10 Si 0.92 42.77 29.59 68.60 2.03 44.80 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 14 N -0.53 -21.92 3.97 -875.50 -3.48 -25.39 16 15 C 0.05 1.75 5.11 86.33 0.44 2.20 16 16 C -0.13 -3.52 5.67 30.65 0.17 -3.35 16 17 C 0.10 2.54 3.32 45.00 0.15 2.69 16 18 N -0.84 -17.54 9.26 -168.35 -1.56 -19.10 16 19 C -0.10 -2.94 5.64 30.65 0.17 -2.77 16 20 C 0.07 2.74 5.27 86.33 0.45 3.20 16 21 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.05 2.70 5.13 -2.39 -0.01 2.69 16 23 H 0.04 2.10 7.00 -2.39 -0.02 2.08 16 24 H 0.04 1.74 6.03 -2.39 -0.01 1.72 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.04 1.89 6.96 -2.39 -0.02 1.88 16 27 H 0.05 2.02 7.83 -2.38 -0.02 2.00 16 28 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 29 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.07 2.53 5.81 -2.39 -0.01 2.52 16 31 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.35 5.83 9.04 -89.69 -0.81 5.02 16 35 H 0.35 6.52 8.98 -89.69 -0.81 5.71 16 36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.06 2.72 6.47 -2.38 -0.02 2.70 16 39 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -57.01 288.16 -0.35 -57.36 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -0.59 Total: 15.51 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 3.04 Total: -23.78 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -4.83 Total: -93.89 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -57.01 -0.35 -57.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.085 kcal (2) G-P(sol) polarization free energy of solvation -57.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds