Wall clock time and date at job start Mon Mar 30 2020 03:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47317 * 2 1 4 4 C 1.52999 * 109.47335 * 239.99983 * 2 1 3 5 5 C 1.53003 * 109.47114 * 119.99797 * 2 1 3 6 6 H 1.09003 * 109.47271 * 165.93635 * 5 2 1 7 7 C 1.50700 * 109.47335 * 285.93999 * 5 2 1 8 8 H 1.07997 * 119.99736 * 85.92775 * 7 5 2 9 9 C 1.37871 * 119.99617 * 265.92566 * 7 5 2 10 10 N 1.31519 * 120.00473 * 334.29634 * 9 7 5 11 11 Si 1.86799 * 119.99697 * 154.30260 * 9 7 5 12 12 H 1.48498 * 109.47441 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47295 * 119.99796 * 11 9 7 14 14 H 1.48506 * 109.46931 * 239.99797 * 11 9 7 15 15 N 1.46900 * 109.46685 * 45.94348 * 5 2 1 16 16 C 1.48717 * 111.02172 * 73.06250 * 15 5 2 17 17 C 1.54381 * 104.52030 * 158.96302 * 16 15 5 18 18 C 1.54266 * 105.14896 * 336.27320 * 17 16 15 19 19 H 1.09000 * 110.31956 * 118.84054 * 18 17 16 20 20 N 1.46896 * 110.32344 * 240.94814 * 18 17 16 21 21 C 1.48566 * 110.99775 * 188.57872 * 15 5 2 22 22 H 1.08999 * 109.47653 * 300.00029 * 1 2 3 23 23 H 1.08998 * 109.47169 * 59.99955 * 1 2 3 24 24 H 1.08999 * 109.47455 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47184 * 169.31141 * 3 2 1 26 26 H 1.08991 * 109.46976 * 289.31874 * 3 2 1 27 27 H 1.09003 * 109.46466 * 49.31723 * 3 2 1 28 28 H 1.08997 * 109.47142 * 323.87189 * 4 2 1 29 29 H 1.09001 * 109.46603 * 83.87231 * 4 2 1 30 30 H 1.08994 * 109.47318 * 203.87351 * 4 2 1 31 31 H 0.96996 * 119.99970 * 179.97438 * 10 9 7 32 32 H 1.09007 * 110.38543 * 40.24530 * 16 15 5 33 33 H 1.08992 * 110.50945 * 277.75131 * 16 15 5 34 34 H 1.08995 * 110.32742 * 217.32553 * 17 16 15 35 35 H 1.08996 * 110.31963 * 95.21430 * 17 16 15 36 36 H 1.00901 * 110.99613 * 298.54629 * 20 18 17 37 37 H 1.00903 * 110.99909 * 62.49894 * 20 18 17 38 38 H 1.08994 * 110.41421 * 82.17593 * 21 15 5 39 39 H 1.09005 * 110.40687 * 319.72988 * 21 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 3.1009 -0.9426 1.1334 7 6 1.8395 0.1601 2.4552 8 1 0.8953 0.1514 2.9794 9 6 2.8616 0.9774 2.8891 10 7 4.1114 0.6632 2.6267 11 14 2.4711 2.5309 3.8501 12 1 1.0003 2.6568 4.0112 13 1 3.1117 2.4596 5.1880 14 1 2.9909 3.7117 3.1146 15 7 1.2951 -1.9745 1.4294 16 6 1.7089 -2.9901 0.4249 17 6 1.2891 -4.3405 1.0442 18 6 1.2268 -4.0849 2.5643 19 1 0.2169 -4.2576 2.9361 20 7 2.1833 -4.9507 3.2668 21 6 1.6157 -2.6010 2.7378 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.1132 1.4484 0.1906 26 1 1.8406 1.8983 -0.9697 27 1 1.5294 2.0083 0.7794 28 1 1.3786 -1.5556 -1.4826 29 1 2.0576 -0.0258 -2.0884 30 1 3.0470 -1.0961 -1.0667 31 1 4.8304 1.2384 2.9317 32 1 2.7884 -2.9593 0.2763 33 1 1.1895 -2.8270 -0.5193 34 1 2.0306 -5.1070 0.8193 35 1 0.3101 -4.6403 0.6704 36 1 1.9642 -5.9247 3.1206 37 1 3.1304 -4.7467 2.9848 38 1 1.0263 -2.1440 3.5327 39 1 2.6805 -2.5096 2.9522 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261142232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:27 Heat of formation + Delta-G solvation = 0.367788 kcal Electronic energy + Delta-G solvation = -17335.166124 eV Core-core repulsion = 14891.331527 eV Total energy + Delta-G solvation = -2443.834596 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.79126 -36.22764 -32.60319 -32.39542 -29.40931 -27.06110 -26.56359 -26.16462 -25.12740 -22.68871 -20.16275 -19.74793 -17.76828 -16.32807 -15.72815 -15.10600 -14.79120 -14.29251 -13.39920 -13.19554 -13.04827 -12.81206 -12.56094 -12.02489 -11.76935 -11.62387 -11.37805 -11.32441 -10.91825 -10.76144 -10.62610 -10.53834 -10.40372 -10.12948 -9.92232 -9.86358 -9.41874 -9.31828 -8.86760 -8.33422 -8.22160 -7.19625 -6.11961 -3.96772 3.29084 3.40002 3.45449 4.43805 4.78308 5.14583 5.26026 5.31234 5.44192 5.59487 5.95197 5.99034 6.05134 6.06775 6.10883 6.26671 6.39180 6.49070 6.53396 6.64771 6.75704 6.77850 6.79223 6.87757 6.96087 7.06483 7.13354 7.33003 7.44148 7.48753 7.58068 7.67402 7.72853 7.86262 8.00840 8.27984 8.63011 9.09999 9.60596 10.97907 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023954 B = 0.011587 C = 0.008921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.630286 B = 2415.944283 C = 3137.993180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.054 4.054 3 C -0.115 4.115 4 C -0.145 4.145 5 C 0.204 3.796 6 H 0.034 0.966 7 C -0.511 4.511 8 H 0.061 0.939 9 C 0.082 3.918 10 N -0.877 5.877 11 Si 0.866 3.134 12 H -0.270 1.270 13 H -0.287 1.287 14 H -0.282 1.282 15 N -0.504 5.504 16 C 0.026 3.974 17 C -0.158 4.158 18 C 0.080 3.920 19 H 0.080 0.920 20 N -0.842 5.842 21 C 0.070 3.930 22 H 0.053 0.947 23 H 0.020 0.980 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.020 0.980 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.035 0.965 30 H 0.044 0.956 31 H 0.260 0.740 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.332 0.668 37 H 0.339 0.661 38 H 0.077 0.923 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.434 -6.427 -4.414 8.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.055 4.055 3 C -0.173 4.173 4 C -0.202 4.202 5 C 0.097 3.903 6 H 0.052 0.948 7 C -0.549 4.549 8 H 0.079 0.921 9 C -0.122 4.122 10 N -0.513 5.513 11 Si 0.693 3.307 12 H -0.194 1.194 13 H -0.214 1.214 14 H -0.208 1.208 15 N -0.228 5.228 16 C -0.102 4.102 17 C -0.199 4.199 18 C -0.033 4.033 19 H 0.098 0.902 20 N -0.371 5.371 21 C -0.058 4.058 22 H 0.072 0.928 23 H 0.039 0.961 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.039 0.961 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.095 0.905 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.074 -5.866 -3.759 8.071 hybrid contribution 1.117 0.437 -0.455 1.282 sum -2.958 -5.429 -4.213 7.482 Atomic orbital electron populations 1.21592 0.95637 1.00825 0.99112 1.20586 0.95045 0.95274 0.94590 1.21658 1.01713 0.95836 0.98109 1.22247 1.00296 0.99640 0.98055 1.19706 0.92119 0.85459 0.92982 0.94837 1.20830 0.99024 1.22491 1.12537 0.92126 1.24819 0.94590 0.97804 0.94967 1.70092 0.98627 1.35987 1.46623 0.86960 0.79092 0.84974 0.79640 1.19422 1.21373 1.20813 1.65529 1.53984 1.03068 1.00255 1.23312 0.97782 0.91547 0.97597 1.23188 1.00744 0.97784 0.98147 1.22362 0.96074 0.94672 0.90159 0.90180 1.58885 1.06320 1.07688 1.64202 1.22666 0.99982 0.89408 0.93785 0.92797 0.96123 0.92776 0.92728 0.96129 0.92509 0.93177 0.94560 0.93716 0.93027 0.95116 0.90762 0.92842 0.91903 0.85627 0.84790 0.90473 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 7.88 37.15 0.29 -1.97 16 2 C -0.05 -1.14 0.62 -154.51 -0.10 -1.23 16 3 C -0.12 -2.53 7.22 37.16 0.27 -2.26 16 4 C -0.15 -2.71 7.51 37.16 0.28 -2.43 16 5 C 0.20 4.80 1.21 -68.86 -0.08 4.71 16 6 H 0.03 0.91 6.56 -51.93 -0.34 0.57 16 7 C -0.51 -13.25 5.38 -34.44 -0.19 -13.44 16 8 H 0.06 1.64 7.89 -52.49 -0.41 1.23 16 9 C 0.08 2.17 3.98 -17.82 -0.07 2.10 16 10 N -0.88 -24.31 12.93 55.43 0.72 -23.59 16 11 Si 0.87 20.77 29.40 -169.99 -5.00 15.77 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 N -0.50 -10.47 3.85 -223.26 -0.86 -11.34 16 16 C 0.03 0.47 4.97 -2.09 -0.01 0.46 16 17 C -0.16 -2.40 6.77 -25.34 -0.17 -2.57 16 18 C 0.08 1.30 4.20 -66.33 -0.28 1.02 16 19 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 20 N -0.84 -12.32 9.21 -3.49 -0.03 -12.35 16 21 C 0.07 1.44 5.17 -2.18 -0.01 1.43 16 22 H 0.05 1.14 7.71 -51.93 -0.40 0.74 16 23 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 1.05 7.26 -51.93 -0.38 0.67 16 25 H 0.05 1.31 7.79 -51.93 -0.40 0.90 16 26 H 0.02 0.39 7.87 -51.93 -0.41 -0.02 16 27 H 0.06 1.30 6.92 -51.93 -0.36 0.94 16 28 H 0.05 0.86 5.44 -51.93 -0.28 0.58 16 29 H 0.04 0.62 7.74 -51.93 -0.40 0.22 16 30 H 0.04 0.87 7.39 -51.93 -0.38 0.48 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.03 0.59 7.52 -51.93 -0.39 0.20 16 33 H 0.07 1.28 5.59 -51.93 -0.29 0.99 16 34 H 0.05 0.73 7.95 -51.93 -0.41 0.32 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.33 3.97 9.06 -39.29 -0.36 3.61 16 37 H 0.34 4.99 8.82 -39.29 -0.35 4.64 16 38 H 0.08 1.70 7.85 -51.93 -0.41 1.30 16 39 H 0.05 1.09 7.74 -51.93 -0.40 0.68 16 LS Contribution 291.47 15.07 4.39 4.39 Total: -1.00 -26.67 291.47 -7.63 -34.30 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.78 Total: 7.00 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -0.07 Total: -14.19 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.18 Total: -47.28 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.00 Total: 15.77 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -26.67 -7.63 -34.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.672 kcal (2) G-P(sol) polarization free energy of solvation -26.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds