Wall clock time and date at job start Mon Mar 30 2020 03:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47317 * 2 1 4 4 C 1.52999 * 109.47335 * 239.99983 * 2 1 3 5 5 C 1.53003 * 109.47114 * 119.99797 * 2 1 3 6 6 H 1.09003 * 109.47271 * 165.93635 * 5 2 1 7 7 C 1.50700 * 109.47335 * 285.93999 * 5 2 1 8 8 H 1.07997 * 119.99736 * 85.92775 * 7 5 2 9 9 C 1.37871 * 119.99617 * 265.92566 * 7 5 2 10 10 N 1.31519 * 120.00473 * 334.29634 * 9 7 5 11 11 Si 1.86799 * 119.99697 * 154.30260 * 9 7 5 12 12 H 1.48498 * 109.47441 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47295 * 119.99796 * 11 9 7 14 14 H 1.48506 * 109.46931 * 239.99797 * 11 9 7 15 15 N 1.46900 * 109.46685 * 45.94348 * 5 2 1 16 16 C 1.48717 * 111.02172 * 73.06250 * 15 5 2 17 17 C 1.54381 * 104.52030 * 158.96302 * 16 15 5 18 18 C 1.54266 * 105.14896 * 336.27320 * 17 16 15 19 19 H 1.09000 * 110.31956 * 118.84054 * 18 17 16 20 20 N 1.46896 * 110.32344 * 240.94814 * 18 17 16 21 21 C 1.48566 * 110.99775 * 188.57872 * 15 5 2 22 22 H 1.08999 * 109.47653 * 300.00029 * 1 2 3 23 23 H 1.08998 * 109.47169 * 59.99955 * 1 2 3 24 24 H 1.08999 * 109.47455 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47184 * 169.31141 * 3 2 1 26 26 H 1.08991 * 109.46976 * 289.31874 * 3 2 1 27 27 H 1.09003 * 109.46466 * 49.31723 * 3 2 1 28 28 H 1.08997 * 109.47142 * 323.87189 * 4 2 1 29 29 H 1.09001 * 109.46603 * 83.87231 * 4 2 1 30 30 H 1.08994 * 109.47318 * 203.87351 * 4 2 1 31 31 H 0.96996 * 119.99970 * 179.97438 * 10 9 7 32 32 H 1.09007 * 110.38543 * 40.24530 * 16 15 5 33 33 H 1.08992 * 110.50945 * 277.75131 * 16 15 5 34 34 H 1.08995 * 110.32742 * 217.32553 * 17 16 15 35 35 H 1.08996 * 110.31963 * 95.21430 * 17 16 15 36 36 H 1.00901 * 110.99613 * 298.54629 * 20 18 17 37 37 H 1.00903 * 110.99909 * 62.49894 * 20 18 17 38 38 H 1.08994 * 110.41421 * 82.17593 * 21 15 5 39 39 H 1.09005 * 110.40687 * 319.72988 * 21 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 3.1009 -0.9426 1.1334 7 6 1.8395 0.1601 2.4552 8 1 0.8953 0.1514 2.9794 9 6 2.8616 0.9774 2.8891 10 7 4.1114 0.6632 2.6267 11 14 2.4711 2.5309 3.8501 12 1 1.0003 2.6568 4.0112 13 1 3.1117 2.4596 5.1880 14 1 2.9909 3.7117 3.1146 15 7 1.2951 -1.9745 1.4294 16 6 1.7089 -2.9901 0.4249 17 6 1.2891 -4.3405 1.0442 18 6 1.2268 -4.0849 2.5643 19 1 0.2169 -4.2576 2.9361 20 7 2.1833 -4.9507 3.2668 21 6 1.6157 -2.6010 2.7378 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.1132 1.4484 0.1906 26 1 1.8406 1.8983 -0.9697 27 1 1.5294 2.0083 0.7794 28 1 1.3786 -1.5556 -1.4826 29 1 2.0576 -0.0258 -2.0884 30 1 3.0470 -1.0961 -1.0667 31 1 4.8304 1.2384 2.9317 32 1 2.7884 -2.9593 0.2763 33 1 1.1895 -2.8270 -0.5193 34 1 2.0306 -5.1070 0.8193 35 1 0.3101 -4.6403 0.6704 36 1 1.9642 -5.9247 3.1206 37 1 3.1304 -4.7467 2.9848 38 1 1.0263 -2.1440 3.5327 39 1 2.6805 -2.5096 2.9522 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261142232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:27 Heat of formation + Delta-G solvation = -17.855586 kcal Electronic energy + Delta-G solvation = -17335.956348 eV Core-core repulsion = 14891.331527 eV Total energy + Delta-G solvation = -2444.624821 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.39519 -37.80164 -34.45773 -34.00113 -30.95633 -28.62152 -28.29451 -27.79386 -26.85524 -24.46617 -21.74318 -21.18669 -19.51112 -18.23822 -17.22640 -16.81932 -16.23566 -16.06487 -15.00734 -14.96865 -14.48780 -14.38275 -14.21006 -13.66122 -13.54255 -13.20117 -13.02744 -12.86702 -12.70731 -12.49836 -12.39042 -12.20391 -12.04858 -11.81162 -11.62185 -11.49526 -11.12319 -11.05116 -10.68475 -10.28567 -9.53588 -8.95928 -8.18717 -6.06895 1.33756 1.40621 1.49987 2.43096 3.10298 3.39688 3.83651 3.89436 4.07514 4.24228 4.36292 4.41301 4.48702 4.56808 4.71410 4.86175 4.92603 4.93489 5.01795 5.05660 5.15323 5.15967 5.27002 5.30349 5.32854 5.35093 5.40401 5.60623 5.70232 5.73927 5.85229 5.91497 6.14746 6.30650 6.39798 6.65928 6.79339 7.04668 7.52617 8.91372 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023954 B = 0.011587 C = 0.008921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.630286 B = 2415.944283 C = 3137.993180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.059 4.059 3 C -0.110 4.110 4 C -0.136 4.136 5 C 0.212 3.788 6 H -0.010 1.010 7 C -0.510 4.510 8 H 0.044 0.956 9 C 0.045 3.955 10 N -0.907 5.907 11 Si 0.914 3.086 12 H -0.267 1.267 13 H -0.288 1.288 14 H -0.278 1.278 15 N -0.505 5.505 16 C 0.026 3.974 17 C -0.146 4.146 18 C 0.091 3.909 19 H 0.089 0.911 20 N -0.846 5.846 21 C 0.072 3.928 22 H 0.032 0.968 23 H 0.045 0.955 24 H 0.059 0.941 25 H 0.025 0.975 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.028 0.972 31 H 0.259 0.741 32 H 0.013 0.987 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.352 0.648 37 H 0.339 0.661 38 H 0.052 0.948 39 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.900 -7.501 -5.753 10.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.060 4.060 3 C -0.168 4.168 4 C -0.193 4.193 5 C 0.105 3.895 6 H 0.008 0.992 7 C -0.549 4.549 8 H 0.063 0.937 9 C -0.156 4.156 10 N -0.546 5.546 11 Si 0.740 3.260 12 H -0.191 1.191 13 H -0.215 1.215 14 H -0.204 1.204 15 N -0.229 5.229 16 C -0.103 4.103 17 C -0.186 4.186 18 C -0.021 4.021 19 H 0.107 0.893 20 N -0.376 5.376 21 C -0.057 4.057 22 H 0.051 0.949 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.032 0.968 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.166 0.834 37 H 0.152 0.848 38 H 0.071 0.929 39 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -5.557 -6.957 -5.096 10.259 hybrid contribution 1.571 0.744 -0.018 1.738 sum -3.986 -6.214 -5.114 8.981 Atomic orbital electron populations 1.21475 0.94103 1.01234 0.99311 1.20574 0.96212 0.94664 0.94544 1.21593 0.99515 0.96600 0.99052 1.22127 0.99642 1.00389 0.97154 1.19504 0.90111 0.86616 0.93287 0.99185 1.20960 0.97918 1.22881 1.13093 0.93730 1.25325 0.94451 0.99765 0.96086 1.70183 0.99272 1.36798 1.48331 0.86209 0.78864 0.82428 0.78495 1.19115 1.21497 1.20367 1.65467 1.53149 1.03108 1.01172 1.23364 0.96975 0.92330 0.97586 1.23132 1.02539 0.96457 0.96444 1.22161 0.96628 0.91756 0.91559 0.89253 1.58789 1.05961 1.08807 1.64076 1.22552 0.97187 0.92736 0.93233 0.94905 0.93555 0.92215 0.95611 0.93209 0.94232 0.91244 0.92674 0.95278 0.93167 0.96830 0.89280 0.90713 0.89701 0.83378 0.84845 0.92906 0.97175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.90 7.88 71.98 0.57 -3.34 16 2 C -0.06 -2.44 0.62 -52.18 -0.03 -2.47 16 3 C -0.11 -4.78 7.22 71.98 0.52 -4.26 16 4 C -0.14 -4.81 7.51 71.98 0.54 -4.27 16 5 C 0.21 10.20 1.21 44.17 0.05 10.25 16 6 H -0.01 -0.55 6.56 -2.39 -0.02 -0.56 16 7 C -0.51 -27.32 5.38 25.60 0.14 -27.19 16 8 H 0.04 2.49 7.89 -2.91 -0.02 2.47 16 9 C 0.04 2.43 3.98 84.65 0.34 2.77 16 10 N -0.91 -52.30 12.93 21.45 0.28 -52.02 16 11 Si 0.91 43.56 29.40 68.60 2.02 45.58 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 15 N -0.50 -20.96 3.85 -860.25 -3.32 -24.27 16 16 C 0.03 0.88 4.97 86.42 0.43 1.31 16 17 C -0.15 -3.96 6.77 31.49 0.21 -3.75 16 18 C 0.09 2.83 4.20 45.81 0.19 3.03 16 19 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 20 N -0.85 -23.33 9.21 -164.96 -1.52 -24.85 16 21 C 0.07 3.01 5.17 86.45 0.45 3.46 16 22 H 0.03 1.34 7.71 -2.39 -0.02 1.33 16 23 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.06 2.16 7.26 -2.39 -0.02 2.14 16 25 H 0.02 1.23 7.79 -2.39 -0.02 1.21 16 26 H 0.05 1.83 7.87 -2.39 -0.02 1.81 16 27 H 0.04 1.81 6.92 -2.39 -0.02 1.79 16 28 H 0.07 2.16 5.44 -2.39 -0.01 2.15 16 29 H 0.05 1.74 7.74 -2.39 -0.02 1.72 16 30 H 0.03 1.10 7.39 -2.39 -0.02 1.08 16 31 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.01 0.51 7.52 -2.38 -0.02 0.49 16 33 H 0.09 2.79 5.59 -2.39 -0.01 2.78 16 34 H 0.07 1.76 7.95 -2.39 -0.02 1.74 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.35 7.41 9.06 -89.69 -0.81 6.60 16 37 H 0.34 9.64 8.82 -89.69 -0.79 8.85 16 38 H 0.05 2.42 7.85 -2.39 -0.02 2.40 16 39 H 0.01 0.48 7.74 -2.38 -0.02 0.47 16 Total: -1.00 -59.29 291.47 0.29 -59.01 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -0.58 Total: 21.02 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 3.41 Total: -24.46 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -4.56 Total: -101.15 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.02 Total: 45.58 kcal Total: -59.29 0.29 -59.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.151 kcal (2) G-P(sol) polarization free energy of solvation -59.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds