Wall clock time and date at job start Mon Mar 30 2020 03:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47124 * 2 1 4 4 C 1.52994 * 109.46936 * 240.00142 * 2 1 3 5 5 C 1.52995 * 109.47035 * 119.99919 * 2 1 3 6 6 H 1.09000 * 109.47831 * 319.09847 * 5 2 1 7 7 C 1.50705 * 109.47124 * 199.09663 * 5 2 1 8 8 H 1.08002 * 119.99819 * 263.28981 * 7 5 2 9 9 C 1.37874 * 120.00086 * 83.29325 * 7 5 2 10 10 N 1.31519 * 119.99623 * 358.20649 * 9 7 5 11 11 Si 1.86791 * 120.00247 * 178.20957 * 9 7 5 12 12 H 1.48502 * 109.47243 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47328 * 119.99832 * 11 9 7 14 14 H 1.48501 * 109.47263 * 239.99852 * 11 9 7 15 15 N 1.46901 * 109.46919 * 79.10001 * 5 2 1 16 16 C 1.48556 * 111.00200 * 74.72323 * 15 5 2 17 17 C 1.54383 * 104.59337 * 200.95904 * 16 15 5 18 18 C 1.54255 * 105.06105 * 23.85203 * 17 16 15 19 19 H 1.09002 * 110.32513 * 241.00460 * 18 17 16 20 20 N 1.46905 * 110.32716 * 118.89479 * 18 17 16 21 21 C 1.48721 * 111.01321 * 319.20796 * 15 5 2 22 22 H 1.09000 * 109.46922 * 317.35377 * 1 2 3 23 23 H 1.08997 * 109.47000 * 77.35215 * 1 2 3 24 24 H 1.08998 * 109.47163 * 197.35768 * 1 2 3 25 25 H 1.08997 * 109.47427 * 187.97461 * 3 2 1 26 26 H 1.09000 * 109.47310 * 307.98275 * 3 2 1 27 27 H 1.09011 * 109.46813 * 67.97674 * 3 2 1 28 28 H 1.09006 * 109.47214 * 292.11024 * 4 2 1 29 29 H 1.08998 * 109.47331 * 52.11146 * 4 2 1 30 30 H 1.09002 * 109.47297 * 172.10984 * 4 2 1 31 31 H 0.97001 * 119.99390 * 180.02562 * 10 9 7 32 32 H 1.08994 * 110.41322 * 82.17875 * 16 15 5 33 33 H 1.08997 * 110.40972 * 319.73233 * 16 15 5 34 34 H 1.08998 * 110.32249 * 264.95176 * 17 16 15 35 35 H 1.09008 * 110.41024 * 142.78851 * 17 16 15 36 36 H 1.00899 * 110.99881 * 62.82410 * 20 18 17 37 37 H 1.00898 * 110.99993 * 186.78388 * 20 18 17 38 38 H 1.08996 * 110.38972 * 40.24868 * 21 15 5 39 39 H 1.08995 * 110.50905 * 277.74861 * 21 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 1.4289 -0.4393 2.1066 7 6 3.4733 -0.3317 1.5042 8 1 4.2753 -0.9663 1.1571 9 6 3.7608 0.8348 2.1807 10 7 2.7853 1.6251 2.5725 11 14 5.5356 1.2926 2.5407 12 1 6.4370 0.2440 1.9992 13 1 5.8504 2.5952 1.9009 14 1 5.7306 1.4023 4.0088 15 7 1.9563 -2.1735 1.0446 16 6 3.0280 -2.6450 0.1303 17 6 2.5140 -3.9983 -0.4063 18 6 0.9798 -3.9302 -0.2618 19 1 0.6268 -4.7180 0.4037 20 7 0.3375 -4.0491 -1.5776 21 6 0.6934 -2.5424 0.3512 22 1 -0.3633 0.7559 0.6962 23 1 -0.3633 0.2250 -1.0027 24 1 -0.3633 -0.9808 0.3066 25 1 3.1206 1.4459 -0.1426 26 1 1.5649 1.9959 -0.8100 27 1 1.7978 1.9135 0.9528 28 1 1.7964 -1.7815 -1.1815 29 1 1.5661 -0.2953 -2.1336 30 1 3.1208 -0.6007 -1.3226 31 1 2.9877 2.4460 3.0481 32 1 3.9609 -2.7824 0.6769 33 1 3.1666 -1.9393 -0.6888 34 1 2.9144 -4.8185 0.1896 35 1 2.7905 -4.1218 -1.4534 36 1 0.5375 -4.9443 -1.9980 37 1 -0.6574 -3.8957 -1.5095 38 1 0.4657 -1.8203 -0.4328 39 1 -0.1294 -2.6039 1.0633 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261142233.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:30 Heat of formation + Delta-G solvation = 75.349428 kcal Electronic energy + Delta-G solvation = -17750.870418 eV Core-core repulsion = 15310.287270 eV Total energy + Delta-G solvation = -2440.583148 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.12254 -35.71555 -32.61152 -32.36225 -29.35203 -28.34062 -26.59811 -25.48921 -25.00823 -22.86682 -19.90618 -19.67036 -17.92759 -16.21745 -15.71471 -15.24549 -15.11089 -14.26564 -13.92507 -13.61114 -13.15826 -12.73304 -12.19384 -12.01903 -11.51403 -11.35363 -11.16869 -10.79242 -10.67751 -10.65823 -10.54755 -10.36558 -10.18567 -10.06601 -9.79648 -9.76247 -9.30107 -8.94282 -8.68159 -8.42426 -8.21784 -6.91486 -5.97633 -3.98630 3.30509 3.39171 3.42791 4.43156 4.67957 5.20830 5.23044 5.36293 5.49160 5.67482 5.98914 6.03827 6.10500 6.12682 6.25789 6.32788 6.43130 6.49747 6.50545 6.69501 6.75489 6.82315 6.89000 6.94047 7.01040 7.13635 7.29573 7.33099 7.45942 7.56705 7.61346 7.71026 7.82480 8.04859 8.29193 8.43986 8.60611 9.06379 9.61681 11.06445 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.034614 B = 0.010481 C = 0.009088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.718290 B = 2670.785201 C = 3080.352852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.080 4.080 3 C -0.132 4.132 4 C -0.168 4.168 5 C 0.206 3.794 6 H 0.060 0.940 7 C -0.495 4.495 8 H 0.061 0.939 9 C 0.063 3.937 10 N -0.884 5.884 11 Si 0.891 3.109 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.285 1.285 15 N -0.501 5.501 16 C 0.004 3.996 17 C -0.122 4.122 18 C 0.079 3.921 19 H 0.033 0.967 20 N -0.843 5.843 21 C -0.006 4.006 22 H 0.047 0.953 23 H 0.034 0.966 24 H 0.069 0.931 25 H 0.046 0.954 26 H -0.004 1.004 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.026 0.974 30 H 0.055 0.945 31 H 0.259 0.741 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.335 0.665 37 H 0.337 0.663 38 H 0.104 0.896 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 -7.166 -6.107 10.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.083 4.083 3 C -0.189 4.189 4 C -0.224 4.224 5 C 0.099 3.901 6 H 0.078 0.922 7 C -0.534 4.534 8 H 0.079 0.921 9 C -0.138 4.138 10 N -0.523 5.523 11 Si 0.719 3.281 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.211 1.211 15 N -0.224 5.224 16 C -0.124 4.124 17 C -0.160 4.160 18 C -0.032 4.032 19 H 0.051 0.949 20 N -0.373 5.373 21 C -0.134 4.134 22 H 0.066 0.934 23 H 0.053 0.947 24 H 0.088 0.912 25 H 0.065 0.935 26 H 0.015 0.985 27 H 0.127 0.873 28 H 0.107 0.893 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.121 0.879 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.287 -6.620 -5.642 9.299 hybrid contribution 0.354 -0.047 -0.109 0.373 sum -2.934 -6.667 -5.751 9.281 Atomic orbital electron populations 1.22662 0.97805 1.02010 0.99788 1.21206 0.92503 0.97804 0.96749 1.22163 0.99788 0.94626 1.02322 1.22923 1.00125 1.02154 0.97179 1.19641 0.97224 0.80490 0.92705 0.92196 1.21217 0.91460 1.05565 1.35128 0.92077 1.24837 0.96872 0.96457 0.95657 1.69789 1.30648 1.12878 1.39024 0.86548 0.85341 0.78224 0.77966 1.19890 1.21192 1.21122 1.65800 0.99481 1.17905 1.39233 1.23920 0.96394 0.94539 0.97508 1.22420 0.94091 0.99142 1.00394 1.22192 0.94919 0.97674 0.88419 0.94903 1.58856 1.15923 1.38414 1.24069 1.24246 0.95545 0.95151 0.98448 0.93434 0.94726 0.91228 0.93495 0.98470 0.87294 0.89293 0.95543 0.92651 0.93112 0.91480 0.89091 0.92443 0.91641 0.85332 0.85141 0.87911 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.30 7.72 37.16 0.29 -3.02 16 2 C -0.08 -1.78 0.57 -154.51 -0.09 -1.87 16 3 C -0.13 -3.14 6.90 37.16 0.26 -2.89 16 4 C -0.17 -3.41 6.04 37.15 0.22 -3.18 16 5 C 0.21 5.03 2.12 -68.86 -0.15 4.88 16 6 H 0.06 1.67 7.55 -51.93 -0.39 1.28 16 7 C -0.50 -13.03 6.83 -34.44 -0.24 -13.26 16 8 H 0.06 1.62 5.86 -52.49 -0.31 1.31 16 9 C 0.06 1.66 4.09 -17.82 -0.07 1.59 16 10 N -0.88 -24.12 9.90 55.43 0.55 -23.57 16 11 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 N -0.50 -10.83 5.54 -223.27 -1.24 -12.07 16 16 C 0.00 0.07 4.39 -2.18 -0.01 0.06 16 17 C -0.12 -1.98 6.47 -25.35 -0.16 -2.15 16 18 C 0.08 1.23 3.90 -66.33 -0.26 0.97 16 19 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 20 N -0.84 -10.75 9.13 -3.49 -0.03 -10.78 16 21 C -0.01 -0.11 3.77 -2.09 -0.01 -0.12 16 22 H 0.05 0.98 8.02 -51.93 -0.42 0.56 16 23 H 0.03 0.63 7.91 -51.93 -0.41 0.22 16 24 H 0.07 1.30 4.03 -51.93 -0.21 1.09 16 25 H 0.05 1.18 6.67 -51.93 -0.35 0.83 16 26 H 0.00 -0.08 8.13 -51.93 -0.42 -0.51 16 27 H 0.11 2.85 5.20 -51.92 -0.27 2.58 16 28 H 0.09 1.70 2.61 -51.93 -0.14 1.57 16 29 H 0.03 0.50 7.99 -51.93 -0.41 0.09 16 30 H 0.05 1.18 6.77 -51.93 -0.35 0.83 16 31 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.07 1.41 7.13 -51.93 -0.37 1.04 16 33 H 0.09 1.87 3.08 -59.62 -0.18 1.69 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.99 7.95 -51.92 -0.41 0.58 16 36 H 0.33 3.56 9.07 -39.29 -0.36 3.20 16 37 H 0.34 3.79 9.03 -39.29 -0.35 3.44 16 38 H 0.10 1.90 2.50 -51.93 -0.13 1.77 16 39 H 0.06 1.09 7.64 -51.93 -0.40 0.69 16 LS Contribution 269.96 15.07 4.07 4.07 Total: -1.00 -27.05 269.96 -7.75 -34.80 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -5.86 Total: 10.47 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -0.21 Total: -18.98 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.72 Total: -46.42 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.05 -7.75 -34.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142233.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.150 kcal (2) G-P(sol) polarization free energy of solvation -27.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds