Wall clock time and date at job start Mon Mar 30 2020 03:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47124 * 2 1 4 4 C 1.52994 * 109.46936 * 240.00142 * 2 1 3 5 5 C 1.52995 * 109.47035 * 119.99919 * 2 1 3 6 6 H 1.09000 * 109.47831 * 319.09847 * 5 2 1 7 7 C 1.50705 * 109.47124 * 199.09663 * 5 2 1 8 8 H 1.08002 * 119.99819 * 263.28981 * 7 5 2 9 9 C 1.37874 * 120.00086 * 83.29325 * 7 5 2 10 10 N 1.31519 * 119.99623 * 358.20649 * 9 7 5 11 11 Si 1.86791 * 120.00247 * 178.20957 * 9 7 5 12 12 H 1.48502 * 109.47243 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47328 * 119.99832 * 11 9 7 14 14 H 1.48501 * 109.47263 * 239.99852 * 11 9 7 15 15 N 1.46901 * 109.46919 * 79.10001 * 5 2 1 16 16 C 1.48556 * 111.00200 * 74.72323 * 15 5 2 17 17 C 1.54383 * 104.59337 * 200.95904 * 16 15 5 18 18 C 1.54255 * 105.06105 * 23.85203 * 17 16 15 19 19 H 1.09002 * 110.32513 * 241.00460 * 18 17 16 20 20 N 1.46905 * 110.32716 * 118.89479 * 18 17 16 21 21 C 1.48721 * 111.01321 * 319.20796 * 15 5 2 22 22 H 1.09000 * 109.46922 * 317.35377 * 1 2 3 23 23 H 1.08997 * 109.47000 * 77.35215 * 1 2 3 24 24 H 1.08998 * 109.47163 * 197.35768 * 1 2 3 25 25 H 1.08997 * 109.47427 * 187.97461 * 3 2 1 26 26 H 1.09000 * 109.47310 * 307.98275 * 3 2 1 27 27 H 1.09011 * 109.46813 * 67.97674 * 3 2 1 28 28 H 1.09006 * 109.47214 * 292.11024 * 4 2 1 29 29 H 1.08998 * 109.47331 * 52.11146 * 4 2 1 30 30 H 1.09002 * 109.47297 * 172.10984 * 4 2 1 31 31 H 0.97001 * 119.99390 * 180.02562 * 10 9 7 32 32 H 1.08994 * 110.41322 * 82.17875 * 16 15 5 33 33 H 1.08997 * 110.40972 * 319.73233 * 16 15 5 34 34 H 1.08998 * 110.32249 * 264.95176 * 17 16 15 35 35 H 1.09008 * 110.41024 * 142.78851 * 17 16 15 36 36 H 1.00899 * 110.99881 * 62.82410 * 20 18 17 37 37 H 1.00898 * 110.99993 * 186.78388 * 20 18 17 38 38 H 1.08996 * 110.38972 * 40.24868 * 21 15 5 39 39 H 1.08995 * 110.50905 * 277.74861 * 21 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 1.4289 -0.4393 2.1066 7 6 3.4733 -0.3317 1.5042 8 1 4.2753 -0.9663 1.1571 9 6 3.7608 0.8348 2.1807 10 7 2.7853 1.6251 2.5725 11 14 5.5356 1.2926 2.5407 12 1 6.4370 0.2440 1.9992 13 1 5.8504 2.5952 1.9009 14 1 5.7306 1.4023 4.0088 15 7 1.9563 -2.1735 1.0446 16 6 3.0280 -2.6450 0.1303 17 6 2.5140 -3.9983 -0.4063 18 6 0.9798 -3.9302 -0.2618 19 1 0.6268 -4.7180 0.4037 20 7 0.3375 -4.0491 -1.5776 21 6 0.6934 -2.5424 0.3512 22 1 -0.3633 0.7559 0.6962 23 1 -0.3633 0.2250 -1.0027 24 1 -0.3633 -0.9808 0.3066 25 1 3.1206 1.4459 -0.1426 26 1 1.5649 1.9959 -0.8100 27 1 1.7978 1.9135 0.9528 28 1 1.7964 -1.7815 -1.1815 29 1 1.5661 -0.2953 -2.1336 30 1 3.1208 -0.6007 -1.3226 31 1 2.9877 2.4460 3.0481 32 1 3.9609 -2.7824 0.6769 33 1 3.1666 -1.9393 -0.6888 34 1 2.9144 -4.8185 0.1896 35 1 2.7905 -4.1218 -1.4534 36 1 0.5375 -4.9443 -1.9980 37 1 -0.6574 -3.8957 -1.5095 38 1 0.4657 -1.8203 -0.4328 39 1 -0.1294 -2.6039 1.0633 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261142233.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:30 Heat of formation + Delta-G solvation = 55.421000 kcal Electronic energy + Delta-G solvation = -17751.734579 eV Core-core repulsion = 15310.287270 eV Total energy + Delta-G solvation = -2441.447310 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.74519 -37.24223 -34.41173 -33.94285 -30.88654 -29.98543 -28.25667 -27.20392 -26.73813 -24.64062 -21.54994 -21.02272 -19.72437 -17.98293 -17.31612 -16.96775 -16.26855 -16.01221 -15.48855 -15.19877 -14.88503 -14.31032 -13.99279 -13.72070 -13.15220 -12.99607 -12.80355 -12.54850 -12.49247 -12.35321 -12.18490 -12.01794 -11.86289 -11.74098 -11.55202 -11.47585 -10.87758 -10.73781 -10.59007 -10.25658 -9.49550 -8.59303 -8.01975 -6.07342 1.39369 1.43188 1.52090 2.45560 3.18990 3.49819 3.86781 3.99296 4.04153 4.32262 4.34454 4.38833 4.45571 4.60406 4.81805 4.91754 4.94423 4.97408 5.02789 5.12080 5.14482 5.23083 5.25696 5.31053 5.36494 5.39804 5.51647 5.58086 5.73853 5.78326 5.91886 6.12223 6.29725 6.36427 6.59977 6.72992 6.80384 7.03964 7.54925 9.01126 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.034614 B = 0.010481 C = 0.009088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.718290 B = 2670.785201 C = 3080.352852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.081 4.081 3 C -0.124 4.124 4 C -0.158 4.158 5 C 0.213 3.787 6 H 0.016 0.984 7 C -0.505 4.505 8 H 0.054 0.946 9 C 0.021 3.979 10 N -0.905 5.905 11 Si 0.943 3.057 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.285 1.285 15 N -0.520 5.520 16 C 0.002 3.998 17 C -0.114 4.114 18 C 0.091 3.909 19 H 0.042 0.958 20 N -0.842 5.842 21 C -0.009 4.009 22 H 0.032 0.968 23 H 0.055 0.945 24 H 0.083 0.917 25 H 0.025 0.975 26 H 0.012 0.988 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.258 0.742 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.351 0.649 37 H 0.348 0.652 38 H 0.104 0.896 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.277 -8.590 -7.657 12.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.083 4.083 3 C -0.182 4.182 4 C -0.214 4.214 5 C 0.106 3.894 6 H 0.034 0.966 7 C -0.543 4.543 8 H 0.072 0.928 9 C -0.177 4.177 10 N -0.545 5.545 11 Si 0.770 3.230 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.211 1.211 15 N -0.244 5.244 16 C -0.125 4.125 17 C -0.152 4.152 18 C -0.021 4.021 19 H 0.060 0.940 20 N -0.375 5.375 21 C -0.137 4.137 22 H 0.051 0.949 23 H 0.074 0.926 24 H 0.101 0.899 25 H 0.044 0.956 26 H 0.031 0.969 27 H 0.104 0.896 28 H 0.122 0.878 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.122 0.878 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.793 -8.065 -7.207 11.462 hybrid contribution 0.490 0.377 0.388 0.730 sum -3.304 -7.688 -6.818 10.794 Atomic orbital electron populations 1.22597 0.95914 1.02444 1.00715 1.21105 0.94107 0.96464 0.96664 1.22013 0.98497 0.96110 1.01542 1.22825 0.99189 1.02890 0.96527 1.19331 0.95293 0.82618 0.92203 0.96590 1.21434 0.92487 1.05420 1.35001 0.92818 1.25433 0.99826 0.96595 0.95866 1.69922 1.31951 1.13059 1.39574 0.85736 0.81835 0.77890 0.77559 1.19638 1.20937 1.21121 1.65637 1.01661 1.16004 1.41060 1.23883 0.95351 0.96616 0.96698 1.22365 0.94630 0.96932 1.01312 1.21966 0.94473 0.95868 0.89809 0.93993 1.58742 1.16744 1.39728 1.22237 1.24267 0.93954 0.97097 0.98352 0.94885 0.92600 0.89890 0.95633 0.96927 0.89613 0.87832 0.94061 0.94127 0.93277 0.93560 0.89698 0.91483 0.89950 0.83483 0.83852 0.87846 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.17 7.72 71.98 0.56 -5.61 16 2 C -0.08 -3.57 0.57 -52.18 -0.03 -3.60 16 3 C -0.12 -5.97 6.90 71.98 0.50 -5.48 16 4 C -0.16 -6.18 6.04 71.98 0.43 -5.74 16 5 C 0.21 10.56 2.12 44.17 0.09 10.66 16 6 H 0.02 0.93 7.55 -2.39 -0.02 0.91 16 7 C -0.50 -27.16 6.83 25.60 0.17 -26.98 16 8 H 0.05 2.91 5.86 -2.91 -0.02 2.89 16 9 C 0.02 1.16 4.09 84.65 0.35 1.51 16 10 N -0.90 -50.80 9.90 21.45 0.21 -50.59 16 11 Si 0.94 43.98 29.54 68.60 2.03 46.01 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 14 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 15 N -0.52 -22.31 5.54 -860.29 -4.76 -27.08 16 16 C 0.00 0.07 4.39 86.45 0.38 0.45 16 17 C -0.11 -3.38 6.47 31.49 0.20 -3.18 16 18 C 0.09 2.51 3.90 45.81 0.18 2.69 16 19 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 20 N -0.84 -18.04 9.13 -164.96 -1.51 -19.54 16 21 C -0.01 -0.32 3.77 86.42 0.33 0.01 16 22 H 0.03 1.34 8.02 -2.39 -0.02 1.32 16 23 H 0.06 1.89 7.91 -2.39 -0.02 1.87 16 24 H 0.08 2.97 4.03 -2.39 -0.01 2.96 16 25 H 0.02 1.28 6.67 -2.39 -0.02 1.27 16 26 H 0.01 0.52 8.13 -2.39 -0.02 0.50 16 27 H 0.09 4.60 5.20 -2.38 -0.01 4.59 16 28 H 0.10 3.73 2.61 -2.38 -0.01 3.72 16 29 H 0.04 1.47 7.99 -2.39 -0.02 1.45 16 30 H 0.04 1.70 6.77 -2.39 -0.02 1.68 16 31 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 32 H 0.05 1.96 7.13 -2.39 -0.02 1.94 16 33 H 0.09 3.42 3.08 -9.61 -0.03 3.39 16 34 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.08 2.19 7.95 -2.38 -0.02 2.17 16 36 H 0.35 5.90 9.07 -89.69 -0.81 5.08 16 37 H 0.35 6.41 9.03 -89.70 -0.81 5.60 16 38 H 0.10 3.57 2.50 -2.39 -0.01 3.57 16 39 H 0.06 2.08 7.64 -2.39 -0.02 2.06 16 Total: -1.00 -58.57 269.96 -1.44 -60.01 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -0.57 Total: 26.47 kcal Atomic # 6 Polarization: -38.44 SS G_CDS: 3.16 Total: -35.28 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -6.06 Total: -97.21 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -58.57 -1.44 -60.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142233.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.433 kcal (2) G-P(sol) polarization free energy of solvation -58.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds