Wall clock time and date at job start Mon Mar 30 2020 03:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47660 * 2 1 4 4 C 1.53001 * 109.47226 * 239.99772 * 2 1 3 5 5 C 1.53005 * 109.47459 * 119.99855 * 2 1 3 6 6 H 1.08996 * 109.47425 * 152.66102 * 5 2 1 7 7 C 1.50703 * 109.47190 * 272.66825 * 5 2 1 8 8 H 1.07998 * 120.00327 * 87.51741 * 7 5 2 9 9 C 1.37881 * 119.99472 * 267.52148 * 7 5 2 10 10 N 1.31516 * 120.00102 * 352.34389 * 9 7 5 11 11 Si 1.86797 * 119.99573 * 172.34217 * 9 7 5 12 12 H 1.48492 * 109.47344 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46666 * 120.00112 * 11 9 7 14 14 H 1.48501 * 109.47072 * 239.99709 * 11 9 7 15 15 N 1.46904 * 109.46750 * 32.65842 * 5 2 1 16 16 C 1.47911 * 110.99664 * 38.83674 * 15 5 2 17 17 C 1.53994 * 107.05677 * 214.15262 * 16 15 5 18 18 C 1.54601 * 105.14020 * 1.22644 * 17 16 15 19 19 H 1.09001 * 110.72068 * 263.41958 * 18 17 16 20 20 N 1.46902 * 110.72226 * 140.31549 * 18 17 16 21 21 C 1.48531 * 111.00283 * 281.44418 * 15 5 2 22 22 H 1.08996 * 109.46836 * 330.44612 * 1 2 3 23 23 H 1.09001 * 109.46788 * 90.44208 * 1 2 3 24 24 H 1.08994 * 109.47159 * 210.44874 * 1 2 3 25 25 H 1.09000 * 109.47379 * 181.49513 * 3 2 1 26 26 H 1.09006 * 109.46874 * 301.49339 * 3 2 1 27 27 H 1.09000 * 109.47003 * 61.49157 * 3 2 1 28 28 H 1.08995 * 109.47211 * 331.25766 * 4 2 1 29 29 H 1.09001 * 109.46930 * 91.26066 * 4 2 1 30 30 H 1.09002 * 109.47360 * 211.26016 * 4 2 1 31 31 H 0.96996 * 119.99826 * 180.02562 * 10 9 7 32 32 H 1.08996 * 109.91613 * 333.50968 * 16 15 5 33 33 H 1.09003 * 109.91327 * 94.80097 * 16 15 5 34 34 H 1.09000 * 110.30389 * 120.14297 * 17 16 15 35 35 H 1.08998 * 110.30568 * 242.31026 * 17 16 15 36 36 H 1.00902 * 110.99888 * 61.45211 * 20 18 17 37 37 H 1.00901 * 110.99686 * 185.41107 * 20 18 17 38 38 H 1.09001 * 110.66415 * 278.15356 * 21 15 5 39 39 H 1.08995 * 110.67021 * 41.28074 * 21 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.0218 -1.1491 1.0465 7 6 2.1452 0.2601 2.3882 8 1 1.2895 0.4481 3.0198 9 6 3.3338 0.9180 2.6237 10 7 4.4152 0.5819 1.9549 11 14 3.4081 2.2867 3.8927 12 1 2.0665 2.4699 4.5024 13 1 4.3872 1.9285 4.9503 14 1 3.8300 3.5494 3.2348 15 7 1.1039 -1.7937 1.6120 16 6 0.5841 -2.4739 0.4058 17 6 -0.8695 -2.8824 0.7087 18 6 -1.1445 -2.3652 2.1394 19 1 -0.9951 -3.1586 2.8717 20 7 -2.5029 -1.8154 2.2412 21 6 -0.0860 -1.2471 2.3130 22 1 -0.3633 0.8939 0.5069 23 1 -0.3633 -0.0079 -1.0277 24 1 -0.3633 -0.8859 0.5208 25 1 3.1298 1.4425 -0.0268 26 1 1.6551 1.9640 -0.8764 27 1 1.6988 1.9485 0.9031 28 1 1.3116 -1.4707 -1.5589 29 1 2.1824 0.0010 -2.0531 30 1 2.9893 -1.2080 -1.0256 31 1 5.2514 1.0445 2.1208 32 1 0.6089 -1.7924 -0.4445 33 1 1.1821 -3.3599 0.1925 34 1 -1.5502 -2.4121 -0.0010 35 1 -0.9731 -3.9668 0.6720 36 1 -3.1951 -2.5236 2.0475 37 1 -2.6569 -1.3973 3.1466 38 1 0.1309 -1.0833 3.3686 39 1 -0.4207 -0.3237 1.8403 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261142235.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:33 Heat of formation + Delta-G solvation = 71.436707 kcal Electronic energy + Delta-G solvation = -17711.536512 eV Core-core repulsion = 15270.783696 eV Total energy + Delta-G solvation = -2440.752817 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.38561 -35.73730 -32.62647 -32.29790 -29.73188 -27.50048 -26.72838 -25.94175 -25.07305 -22.74118 -19.89440 -19.80171 -17.75133 -16.47404 -15.69051 -15.27055 -14.90604 -14.36047 -14.21250 -13.57942 -13.07971 -12.55211 -12.44803 -12.00269 -11.76901 -11.42997 -11.07066 -10.93619 -10.83107 -10.60503 -10.53163 -10.31322 -10.13211 -10.05513 -9.98131 -9.65285 -9.55166 -8.98876 -8.73366 -8.43621 -8.36586 -6.98266 -6.00353 -3.97356 3.29741 3.38872 3.41933 4.43800 4.67615 5.17421 5.24896 5.33859 5.52718 5.61748 5.88330 5.96031 5.98333 6.06593 6.23822 6.25849 6.34538 6.44212 6.59438 6.62885 6.68785 6.71318 6.85445 6.89043 6.93540 7.03810 7.19077 7.32677 7.42397 7.46003 7.62843 7.67073 7.77278 7.86606 8.04597 8.47736 8.62323 9.07426 9.61659 11.08725 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028333 B = 0.011248 C = 0.009449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.999687 B = 2488.723252 C = 2962.671053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.088 4.088 3 C -0.111 4.111 4 C -0.146 4.146 5 C 0.203 3.797 6 H 0.073 0.927 7 C -0.502 4.502 8 H 0.060 0.940 9 C 0.071 3.929 10 N -0.886 5.886 11 Si 0.882 3.118 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.284 1.284 15 N -0.507 5.507 16 C -0.012 4.012 17 C -0.126 4.126 18 C 0.073 3.927 19 H 0.040 0.960 20 N -0.842 5.842 21 C 0.033 3.967 22 H 0.044 0.956 23 H 0.027 0.973 24 H 0.106 0.894 25 H 0.062 0.938 26 H 0.009 0.991 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.036 0.964 30 H 0.055 0.945 31 H 0.259 0.741 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.334 0.666 37 H 0.339 0.661 38 H 0.068 0.932 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.910 -3.767 -2.539 10.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.090 4.090 3 C -0.168 4.168 4 C -0.203 4.203 5 C 0.096 3.904 6 H 0.091 0.909 7 C -0.541 4.541 8 H 0.078 0.922 9 C -0.131 4.131 10 N -0.524 5.524 11 Si 0.710 3.290 12 H -0.198 1.198 13 H -0.212 1.212 14 H -0.210 1.210 15 N -0.231 5.231 16 C -0.139 4.139 17 C -0.164 4.164 18 C -0.039 4.039 19 H 0.058 0.942 20 N -0.372 5.372 21 C -0.094 4.094 22 H 0.063 0.937 23 H 0.046 0.954 24 H 0.124 0.876 25 H 0.081 0.919 26 H 0.028 0.972 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.086 0.914 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.168 -3.615 -2.816 9.366 hybrid contribution -0.327 0.672 0.929 1.193 sum -8.496 -2.943 -1.886 9.187 Atomic orbital electron populations 1.23269 0.97103 1.03823 0.99802 1.21238 0.93664 0.97193 0.96947 1.21708 1.01827 0.94739 0.98566 1.22435 1.00782 0.99226 0.97865 1.19899 0.92277 0.87083 0.91116 0.90886 1.21141 0.97064 1.22149 1.13738 0.92226 1.24873 0.95535 0.97059 0.95633 1.69938 0.99774 1.40684 1.41996 0.86697 0.78092 0.82554 0.81677 1.19774 1.21159 1.21001 1.65210 1.11763 1.27835 1.18257 1.23885 0.92911 0.99809 0.97312 1.22493 0.97822 0.99639 0.96495 1.22443 0.88619 0.96555 0.96250 0.94162 1.58752 1.03595 1.37508 1.37335 1.23601 0.88989 0.96662 1.00192 0.93666 0.95350 0.87565 0.91935 0.97199 0.91992 0.93034 0.94471 0.92627 0.93080 0.88868 0.92585 0.91136 0.92599 0.85466 0.84839 0.91413 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.62 6.09 37.15 0.23 -3.39 16 2 C -0.09 -1.90 0.60 -154.51 -0.09 -2.00 16 3 C -0.11 -2.52 6.83 37.16 0.25 -2.27 16 4 C -0.15 -2.86 8.11 37.16 0.30 -2.56 16 5 C 0.20 4.92 2.33 -68.86 -0.16 4.76 16 6 H 0.07 2.04 6.55 -51.93 -0.34 1.70 16 7 C -0.50 -13.16 6.04 -34.44 -0.21 -13.37 16 8 H 0.06 1.57 5.89 -52.49 -0.31 1.26 16 9 C 0.07 1.91 4.12 -17.82 -0.07 1.84 16 10 N -0.89 -24.70 11.97 55.43 0.66 -24.04 16 11 Si 0.88 20.98 29.54 -169.99 -5.02 15.96 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 15 N -0.51 -11.01 5.45 -223.87 -1.22 -12.23 16 16 C -0.01 -0.22 5.27 -2.75 -0.01 -0.23 16 17 C -0.13 -1.98 5.92 -25.37 -0.15 -2.13 16 18 C 0.07 1.17 4.09 -65.85 -0.27 0.90 16 19 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 20 N -0.84 -11.24 9.28 -3.09 -0.03 -11.27 16 21 C 0.03 0.66 3.97 -1.90 -0.01 0.65 16 22 H 0.04 0.92 7.28 -51.93 -0.38 0.54 16 23 H 0.03 0.51 7.79 -51.93 -0.40 0.10 16 24 H 0.11 2.00 1.00 -51.93 -0.05 1.95 16 25 H 0.06 1.55 7.09 -51.93 -0.37 1.18 16 26 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.06 1.49 6.46 -51.93 -0.34 1.15 16 28 H 0.05 0.90 5.63 -51.93 -0.29 0.61 16 29 H 0.04 0.68 7.81 -51.93 -0.41 0.27 16 30 H 0.05 1.15 7.38 -51.93 -0.38 0.76 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.09 1.73 1.54 -51.93 -0.08 1.65 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.08 7.78 -51.93 -0.40 0.67 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.33 3.67 9.07 -39.29 -0.36 3.31 16 37 H 0.34 4.13 9.07 -39.29 -0.36 3.78 16 38 H 0.07 1.43 7.33 -51.93 -0.38 1.05 16 39 H 0.08 1.73 4.23 -51.93 -0.22 1.51 16 LS Contribution 273.72 15.07 4.12 4.12 Total: -1.00 -27.38 273.72 -7.57 -34.95 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.89 Total: 10.29 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -0.20 Total: -17.78 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.59 Total: -47.54 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.38 -7.57 -34.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142235.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.390 kcal (2) G-P(sol) polarization free energy of solvation -27.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds