Wall clock time and date at job start Mon Mar 30 2020 03:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47081 * 2 1 4 4 C 1.53006 * 109.47154 * 120.00107 * 2 1 3 5 5 H 1.08995 * 109.46635 * 52.83527 * 4 2 1 6 6 C 1.50700 * 109.46735 * 172.83754 * 4 2 1 7 7 H 1.07999 * 119.99634 * 114.58601 * 6 4 2 8 8 C 1.37876 * 120.00122 * 294.57506 * 6 4 2 9 9 N 1.31516 * 119.99762 * 351.73226 * 8 6 4 10 10 Si 1.86796 * 120.00024 * 171.72891 * 8 6 4 11 11 H 1.48498 * 109.47126 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47123 * 120.00110 * 10 8 6 13 13 H 1.48492 * 109.47386 * 240.00029 * 10 8 6 14 14 N 1.46899 * 109.46937 * 292.83759 * 4 2 1 15 15 C 1.47847 * 110.99989 * 71.60467 * 14 4 2 16 16 C 1.54909 * 104.79216 * 146.36135 * 15 14 4 17 17 C 1.55137 * 101.65413 * 322.93281 * 16 15 14 18 18 H 1.09006 * 110.70380 * 277.26594 * 17 16 15 19 19 C 1.53001 * 110.70693 * 154.03813 * 17 16 15 20 20 N 1.46903 * 109.47189 * 71.39596 * 19 17 16 21 21 C 1.47444 * 110.99897 * 192.45163 * 14 4 2 22 22 H 1.09002 * 109.47139 * 316.18458 * 1 2 3 23 23 H 1.08997 * 109.47047 * 76.18853 * 1 2 3 24 24 H 1.09004 * 109.46624 * 196.18617 * 1 2 3 25 25 H 1.09004 * 109.47388 * 239.99963 * 2 1 3 26 26 H 1.08995 * 109.47048 * 184.76611 * 3 2 1 27 27 H 1.08992 * 109.47191 * 304.76979 * 3 2 1 28 28 H 1.09000 * 109.47032 * 64.76802 * 3 2 1 29 29 H 0.97005 * 119.99527 * 179.97438 * 9 8 6 30 30 H 1.08998 * 110.37404 * 265.18856 * 15 14 4 31 31 H 1.08990 * 110.37445 * 27.42664 * 15 14 4 32 32 H 1.09000 * 110.98909 * 81.02082 * 16 15 14 33 33 H 1.09005 * 110.99062 * 204.83736 * 16 15 14 34 34 H 1.08998 * 109.47259 * 191.39937 * 19 17 16 35 35 H 1.09006 * 109.47270 * 311.40179 * 19 17 16 36 36 H 1.00904 * 111.00172 * 56.05074 * 20 19 17 37 37 H 1.00899 * 110.99916 * 180.02562 * 20 19 17 38 38 H 1.09006 * 109.88626 * 356.14428 * 21 14 4 39 39 H 1.08997 * 109.89472 * 117.33387 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 1 1.5758 -1.7052 1.3156 6 6 3.5366 -0.8765 1.1638 7 1 4.1738 -0.3640 1.8693 8 6 4.0923 -1.6729 0.1851 9 7 3.3195 -2.4236 -0.5692 10 14 5.9428 -1.6856 -0.0696 11 1 6.5824 -0.7611 0.9007 12 1 6.4621 -3.0608 0.1415 13 1 6.2551 -1.2456 -1.4530 14 7 1.6965 0.0637 2.4424 15 6 0.2445 0.0055 2.7149 16 6 0.1297 0.0519 4.2591 17 6 1.3566 -0.7941 4.6901 18 1 1.1222 -1.8581 4.6560 19 6 1.8303 -0.3875 6.0870 20 7 0.8577 -0.8480 7.0871 21 6 2.4172 -0.4346 3.6283 22 1 -0.3633 0.7415 0.7115 23 1 -0.3633 0.2453 -0.9979 24 1 -0.3633 -0.9870 0.2865 25 1 1.8934 -0.5138 -0.8900 26 1 3.1266 1.4437 -0.0854 27 1 1.6086 1.9804 -0.8441 28 1 1.7481 1.9310 0.9296 29 1 3.7105 -2.9836 -1.2580 30 1 -0.2596 0.8639 2.2710 31 1 -0.1771 -0.9226 2.3292 32 1 0.2125 1.0749 4.6262 33 1 -0.7995 -0.4081 4.5955 34 1 2.8007 -0.8413 6.2880 35 1 1.9188 0.6977 6.1391 36 1 0.7096 -1.8435 7.0159 37 1 1.1479 -0.5910 8.0187 38 1 2.9945 -1.3212 3.3659 39 1 3.0791 0.3411 4.0132 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261142808.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:55 Heat of formation + Delta-G solvation = -4.093829 kcal Electronic energy + Delta-G solvation = -16942.082672 eV Core-core repulsion = 14498.054606 eV Total energy + Delta-G solvation = -2444.028066 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.77520 -35.73139 -33.49608 -32.13353 -29.86207 -28.62524 -26.24333 -25.77231 -23.72328 -22.53807 -20.10971 -19.66935 -18.70149 -16.00046 -15.72012 -15.30545 -14.98353 -14.29964 -14.12233 -13.29520 -13.03532 -12.94365 -12.70378 -12.09225 -11.74757 -11.71098 -11.44038 -11.37290 -10.95070 -10.87398 -10.58434 -10.45183 -10.26331 -10.11453 -9.91249 -9.78298 -9.53151 -9.05136 -8.69852 -8.59679 -8.39554 -7.04834 -6.02531 -4.01937 3.29073 3.37958 3.42077 4.42764 4.62941 5.10619 5.15465 5.26933 5.30134 5.57633 5.77115 5.91017 5.96508 6.12352 6.23218 6.26072 6.30159 6.36893 6.47025 6.52163 6.67926 6.70653 6.85893 6.91716 6.93741 6.99667 7.11567 7.17692 7.37784 7.45758 7.48857 7.70550 7.74810 7.87347 8.15461 8.38321 8.64412 9.05634 9.60951 11.06404 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024652 B = 0.009470 C = 0.007539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.530348 B = 2955.967098 C = 3713.226559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.079 4.079 3 C -0.119 4.119 4 C 0.217 3.783 5 H 0.005 0.995 6 C -0.504 4.504 7 H 0.062 0.938 8 C 0.062 3.938 9 N -0.889 5.889 10 Si 0.887 3.113 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.284 1.284 14 N -0.521 5.521 15 C 0.037 3.963 16 C -0.111 4.111 17 C -0.111 4.111 18 H 0.065 0.935 19 C 0.074 3.926 20 N -0.851 5.851 21 C 0.059 3.941 22 H 0.052 0.948 23 H 0.029 0.971 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.050 0.950 27 H 0.016 0.984 28 H 0.053 0.947 29 H 0.259 0.741 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.024 0.976 35 H 0.071 0.929 36 H 0.337 0.663 37 H 0.335 0.665 38 H 0.071 0.929 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.158 3.106 8.722 10.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.099 4.099 3 C -0.176 4.176 4 C 0.110 3.890 5 H 0.023 0.977 6 C -0.542 4.542 7 H 0.080 0.920 8 C -0.140 4.140 9 N -0.528 5.528 10 Si 0.715 3.285 11 H -0.197 1.197 12 H -0.213 1.213 13 H -0.210 1.210 14 N -0.245 5.245 15 C -0.091 4.091 16 C -0.149 4.149 17 C -0.131 4.131 18 H 0.084 0.916 19 C -0.057 4.057 20 N -0.380 5.380 21 C -0.070 4.070 22 H 0.071 0.929 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.099 0.901 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.090 0.910 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.089 0.911 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.497 3.972 8.064 10.052 hybrid contribution 1.583 -1.595 0.178 2.255 sum -2.914 2.377 8.242 9.059 Atomic orbital electron populations 1.22266 0.98925 1.00298 0.99411 1.21046 0.91596 0.95935 1.01317 1.21533 1.00772 0.96426 0.98864 1.19468 0.95327 0.89357 0.84854 0.97701 1.21169 0.91161 1.27456 1.14427 0.91985 1.24914 0.97708 0.95081 0.96271 1.69979 1.34734 1.26290 1.21774 0.86611 0.86107 0.77585 0.78166 1.19723 1.21334 1.20978 1.63584 1.02811 1.54330 1.03779 1.23350 0.91820 0.99900 0.94033 1.22648 0.97071 0.99535 0.95682 1.22468 0.97195 0.99361 0.94077 0.91626 1.21785 0.92232 1.00202 0.91471 1.58736 1.51113 1.20501 1.07609 1.22684 0.95448 0.99722 0.89127 0.92888 0.95165 0.94045 0.90138 0.93081 0.96474 0.92827 0.93101 0.91021 0.94429 0.91615 0.92056 0.95760 0.91009 0.85070 0.85320 0.91108 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 7.85 37.16 0.29 -2.76 16 2 C -0.08 -1.85 2.63 -90.62 -0.24 -2.09 16 3 C -0.12 -2.56 8.74 37.16 0.32 -2.24 16 4 C 0.22 5.31 1.15 -68.86 -0.08 5.23 16 5 H 0.01 0.15 7.60 -51.93 -0.39 -0.25 16 6 C -0.50 -13.40 6.30 -34.44 -0.22 -13.62 16 7 H 0.06 1.67 6.99 -52.49 -0.37 1.30 16 8 C 0.06 1.69 5.16 -17.82 -0.09 1.59 16 9 N -0.89 -25.24 12.11 55.43 0.67 -24.57 16 10 Si 0.89 21.17 29.55 -169.99 -5.02 16.15 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 N -0.52 -10.98 3.86 -224.68 -0.87 -11.85 16 15 C 0.04 0.68 4.88 -2.30 -0.01 0.67 16 16 C -0.11 -1.77 6.44 -24.59 -0.16 -1.93 16 17 C -0.11 -1.79 3.10 -88.80 -0.28 -2.06 16 18 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 19 C 0.07 0.99 6.08 -3.82 -0.02 0.97 16 20 N -0.85 -9.76 9.54 -10.37 -0.10 -9.86 16 21 C 0.06 1.15 5.39 -2.84 -0.02 1.14 16 22 H 0.05 0.98 5.09 -51.93 -0.26 0.71 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.04 0.84 7.14 -51.93 -0.37 0.47 16 25 H 0.08 2.14 6.71 -51.93 -0.35 1.79 16 26 H 0.05 1.17 7.60 -51.93 -0.39 0.78 16 27 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 1.12 7.25 -51.93 -0.38 0.75 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.07 1.28 5.99 -51.93 -0.31 0.96 16 31 H 0.04 0.74 6.44 -51.93 -0.33 0.40 16 32 H 0.07 1.03 7.94 -51.93 -0.41 0.62 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.98 8.00 -51.93 -0.42 0.56 16 36 H 0.34 3.60 8.99 -39.29 -0.35 3.24 16 37 H 0.34 3.13 9.08 -39.29 -0.36 2.77 16 38 H 0.07 1.56 6.44 -51.93 -0.33 1.23 16 39 H 0.06 1.10 7.82 -51.93 -0.41 0.69 16 LS Contribution 292.22 15.07 4.40 4.40 Total: -1.00 -27.74 292.22 -8.10 -35.84 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.69 Total: 4.99 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -0.49 Total: -15.10 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.30 Total: -46.28 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.74 -8.10 -35.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142808.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.747 kcal (2) G-P(sol) polarization free energy of solvation -27.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds