Wall clock time and date at job start Mon Mar 30 2020 03:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47374 * 2 1 4 4 C 1.52999 * 109.46961 * 119.99961 * 2 1 3 5 5 H 1.08996 * 109.47057 * 301.16911 * 4 2 1 6 6 C 1.50697 * 109.47116 * 181.16906 * 4 2 1 7 7 H 1.08000 * 120.00278 * 275.43424 * 6 4 2 8 8 C 1.37879 * 119.99943 * 95.43019 * 6 4 2 9 9 N 1.31517 * 120.00068 * 10.12952 * 8 6 4 10 10 Si 1.86797 * 120.00133 * 190.12677 * 8 6 4 11 11 H 1.48506 * 109.47433 * 270.00025 * 10 8 6 12 12 H 1.48495 * 109.47403 * 30.00133 * 10 8 6 13 13 H 1.48501 * 109.47233 * 150.00400 * 10 8 6 14 14 N 1.46906 * 109.47213 * 61.17250 * 4 2 1 15 15 C 1.48531 * 111.00082 * 58.60963 * 14 4 2 16 16 C 1.54936 * 103.22902 * 159.72188 * 15 14 4 17 17 C 1.54602 * 102.91794 * 322.58650 * 16 15 14 18 18 H 1.08997 * 110.38963 * 262.99590 * 17 16 15 19 19 C 1.53000 * 110.30335 * 140.87477 * 17 16 15 20 20 N 1.46893 * 109.47600 * 69.28312 * 19 17 16 21 21 C 1.47897 * 110.99753 * 176.00506 * 14 4 2 22 22 H 1.08997 * 109.46642 * 303.67338 * 1 2 3 23 23 H 1.09002 * 109.46851 * 63.67160 * 1 2 3 24 24 H 1.08993 * 109.46964 * 183.66942 * 1 2 3 25 25 H 1.09000 * 109.46990 * 239.99465 * 2 1 3 26 26 H 1.09003 * 109.47090 * 304.66787 * 3 2 1 27 27 H 1.09001 * 109.47298 * 64.66524 * 3 2 1 28 28 H 1.08995 * 109.47307 * 184.66579 * 3 2 1 29 29 H 0.96998 * 119.99626 * 5.67758 * 9 8 6 30 30 H 1.09009 * 110.66653 * 278.15647 * 15 14 4 31 31 H 1.09001 * 110.66976 * 41.28455 * 15 14 4 32 32 H 1.08990 * 110.72471 * 204.22940 * 16 15 14 33 33 H 1.09001 * 110.87538 * 81.01192 * 16 15 14 34 34 H 1.09007 * 109.46577 * 189.28224 * 19 17 16 35 35 H 1.09002 * 109.47641 * 309.27599 * 19 17 16 36 36 H 1.00906 * 110.99940 * 56.03843 * 20 19 17 37 37 H 1.00900 * 111.00155 * 179.97438 * 20 19 17 38 38 H 1.08990 * 109.92538 * 333.50894 * 21 14 4 39 39 H 1.09007 * 109.91797 * 94.80462 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6597 -0.2197 2.1391 6 6 3.5467 -0.6962 1.2639 7 1 4.1046 -1.4454 0.7218 8 6 4.2131 0.2833 1.9693 9 7 3.5497 1.0716 2.7867 10 14 6.0581 0.4907 1.7639 11 1 6.7652 -0.3572 2.7572 12 1 6.4529 0.0802 0.3925 13 1 6.4233 1.9139 1.9790 14 7 1.5736 -2.1142 1.2352 15 6 2.0459 -2.8214 0.0174 16 6 1.9375 -4.3161 0.4110 17 6 2.3603 -4.3135 1.8980 18 1 3.4132 -4.5784 1.9940 19 6 1.4934 -5.2877 2.6982 20 7 1.8175 -6.6661 2.3074 21 6 2.1264 -2.8698 2.3801 22 1 -0.3632 0.5698 0.8552 23 1 -0.3633 0.4558 -0.9211 24 1 -0.3633 -1.0255 0.0658 25 1 1.8934 -0.5139 -0.8899 26 1 1.6101 1.9799 -0.8452 27 1 1.7467 1.9316 0.9288 28 1 3.1268 1.4436 -0.0836 29 1 2.6081 0.9122 2.9565 30 1 1.3993 -2.5993 -0.8316 31 1 3.0794 -2.5562 -0.2051 32 1 2.6213 -4.9219 -0.1834 33 1 0.9135 -4.6732 0.3017 34 1 1.6875 -5.1566 3.7628 35 1 0.4411 -5.0900 2.4937 36 1 2.8017 -6.8539 2.4269 37 1 1.2579 -7.3291 2.8227 38 1 3.0704 -2.4265 2.6967 39 1 1.4153 -2.8649 3.2064 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261142812.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:57 Heat of formation + Delta-G solvation = -12.979736 kcal Electronic energy + Delta-G solvation = -16995.291733 eV Core-core repulsion = 14550.878344 eV Total energy + Delta-G solvation = -2444.413388 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.72249 -35.90168 -33.62409 -32.18563 -29.88699 -28.34295 -26.23972 -25.35881 -23.60069 -22.56246 -20.63139 -19.48111 -18.77870 -16.56327 -15.75802 -15.33852 -14.54982 -14.21738 -13.80405 -13.69983 -13.29515 -12.98255 -12.75610 -12.25490 -11.79437 -11.42170 -11.29088 -11.16139 -10.96354 -10.79488 -10.54322 -10.37721 -10.18708 -10.14574 -9.93658 -9.85018 -9.74312 -9.20723 -8.87896 -8.57952 -8.38706 -7.02552 -6.34099 -4.06729 3.38647 3.42817 3.57873 4.49290 4.66541 5.10823 5.26439 5.28436 5.38060 5.55464 5.83344 5.95194 6.05443 6.09808 6.14934 6.19638 6.30298 6.43066 6.51835 6.53613 6.63994 6.75898 6.79049 6.83873 6.88973 6.94640 7.02400 7.13722 7.22020 7.26890 7.44884 7.48411 7.56717 7.99920 8.12469 8.32611 8.56437 8.84105 9.63230 10.98719 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023560 B = 0.010027 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.176722 B = 2791.656668 C = 3530.512640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.079 4.079 3 C -0.123 4.123 4 C 0.186 3.814 5 H 0.047 0.953 6 C -0.617 4.617 7 H 0.050 0.950 8 C 0.035 3.965 9 N -0.904 5.904 10 Si 1.053 2.947 11 H -0.290 1.290 12 H -0.289 1.289 13 H -0.283 1.283 14 N -0.513 5.513 15 C 0.036 3.964 16 C -0.102 4.102 17 C -0.094 4.094 18 H 0.062 0.938 19 C 0.073 3.927 20 N -0.851 5.851 21 C 0.047 3.953 22 H 0.040 0.960 23 H 0.029 0.971 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.023 0.977 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.271 0.729 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.021 0.979 35 H 0.072 0.928 36 H 0.337 0.663 37 H 0.335 0.665 38 H 0.068 0.932 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.893 -8.653 -1.822 9.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.099 4.099 3 C -0.181 4.181 4 C 0.079 3.921 5 H 0.065 0.935 6 C -0.656 4.656 7 H 0.068 0.932 8 C -0.171 4.171 9 N -0.540 5.540 10 Si 0.882 3.118 11 H -0.217 1.217 12 H -0.215 1.215 13 H -0.209 1.209 14 N -0.237 5.237 15 C -0.092 4.092 16 C -0.141 4.141 17 C -0.113 4.113 18 H 0.081 0.919 19 C -0.058 4.058 20 N -0.379 5.379 21 C -0.083 4.083 22 H 0.059 0.941 23 H 0.048 0.952 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.091 0.909 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.087 0.913 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.456 -7.432 -2.061 8.095 hybrid contribution 0.019 -1.027 0.546 1.163 sum -2.437 -8.459 -1.516 8.933 Atomic orbital electron populations 1.21813 0.97557 1.01133 0.99071 1.21190 0.92896 0.96193 0.99576 1.21600 1.01811 0.95646 0.99065 1.19669 0.93568 0.84891 0.93978 0.93522 1.22313 0.92213 1.16419 1.34633 0.93172 1.25594 1.05713 0.92945 0.92846 1.70787 1.11988 1.38190 1.33026 0.83798 0.75568 0.76585 0.75852 1.21721 1.21528 1.20900 1.65124 1.54210 1.03702 1.00625 1.23114 0.99400 0.92144 0.94588 1.22370 1.00696 0.96328 0.94668 1.21978 0.98297 0.95136 0.95912 0.91904 1.21906 1.00183 0.87746 0.95962 1.58737 1.10241 1.04091 1.64844 1.22688 0.99974 0.90951 0.94641 0.94070 0.95189 0.92435 0.93258 0.95825 0.93448 0.91965 0.91614 0.92107 0.92932 0.92605 0.91745 0.96042 0.90921 0.85143 0.85372 0.91336 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.10 37.16 0.34 -2.34 16 2 C -0.08 -1.73 2.21 -90.62 -0.20 -1.93 16 3 C -0.12 -2.75 8.31 37.16 0.31 -2.44 16 4 C 0.19 4.43 1.66 -68.86 -0.11 4.32 16 5 H 0.05 1.25 5.96 -51.93 -0.31 0.94 16 6 C -0.62 -15.97 5.28 -34.44 -0.18 -16.15 16 7 H 0.05 1.34 6.10 -52.49 -0.32 1.02 16 8 C 0.04 0.95 4.23 -17.82 -0.08 0.87 16 9 N -0.90 -25.63 13.30 55.43 0.74 -24.89 16 10 Si 1.05 24.47 29.92 -169.99 -5.09 19.38 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 N -0.51 -10.92 4.56 -223.89 -1.02 -11.94 16 15 C 0.04 0.70 5.19 -1.90 -0.01 0.69 16 16 C -0.10 -1.74 6.48 -24.87 -0.16 -1.90 16 17 C -0.09 -1.58 3.16 -89.26 -0.28 -1.86 16 18 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 19 C 0.07 1.03 5.87 -3.83 -0.02 1.00 16 20 N -0.85 -10.19 9.49 -10.37 -0.10 -10.29 16 21 C 0.05 0.94 6.12 -2.76 -0.02 0.93 16 22 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 1.11 7.53 -51.93 -0.39 0.72 16 25 H 0.05 1.09 6.84 -51.93 -0.36 0.74 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.11 8.05 -51.93 -0.42 0.69 16 28 H 0.06 1.51 6.74 -51.93 -0.35 1.16 16 29 H 0.27 7.76 6.45 -40.82 -0.26 7.49 16 30 H 0.06 1.16 7.63 -51.92 -0.40 0.76 16 31 H 0.05 1.15 5.90 -51.93 -0.31 0.84 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.08 7.76 -51.93 -0.40 0.67 16 34 H 0.02 0.29 8.14 -51.92 -0.42 -0.13 16 35 H 0.07 1.07 8.00 -51.93 -0.42 0.66 16 36 H 0.34 3.71 8.99 -39.29 -0.35 3.36 16 37 H 0.33 3.28 9.08 -39.29 -0.36 2.93 16 38 H 0.07 1.61 6.34 -51.93 -0.33 1.28 16 39 H 0.05 1.05 7.68 -51.92 -0.40 0.65 16 LS Contribution 294.09 15.07 4.43 4.43 Total: -1.00 -27.13 294.09 -8.15 -35.28 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.70 Total: 6.86 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -0.42 Total: -18.82 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.38 Total: -47.13 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -5.09 Total: 19.38 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.13 -8.15 -35.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142812.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.297 kcal (2) G-P(sol) polarization free energy of solvation -27.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds