Wall clock time and date at job start Mon Mar 30 2020 03:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47374 * 2 1 4 4 C 1.52999 * 109.46961 * 119.99961 * 2 1 3 5 5 H 1.08996 * 109.47057 * 301.16911 * 4 2 1 6 6 C 1.50697 * 109.47116 * 181.16906 * 4 2 1 7 7 H 1.08000 * 120.00278 * 275.43424 * 6 4 2 8 8 C 1.37879 * 119.99943 * 95.43019 * 6 4 2 9 9 N 1.31517 * 120.00068 * 10.12952 * 8 6 4 10 10 Si 1.86797 * 120.00133 * 190.12677 * 8 6 4 11 11 H 1.48506 * 109.47433 * 270.00025 * 10 8 6 12 12 H 1.48495 * 109.47403 * 30.00133 * 10 8 6 13 13 H 1.48501 * 109.47233 * 150.00400 * 10 8 6 14 14 N 1.46906 * 109.47213 * 61.17250 * 4 2 1 15 15 C 1.48531 * 111.00082 * 58.60963 * 14 4 2 16 16 C 1.54936 * 103.22902 * 159.72188 * 15 14 4 17 17 C 1.54602 * 102.91794 * 322.58650 * 16 15 14 18 18 H 1.08997 * 110.38963 * 262.99590 * 17 16 15 19 19 C 1.53000 * 110.30335 * 140.87477 * 17 16 15 20 20 N 1.46893 * 109.47600 * 69.28312 * 19 17 16 21 21 C 1.47897 * 110.99753 * 176.00506 * 14 4 2 22 22 H 1.08997 * 109.46642 * 303.67338 * 1 2 3 23 23 H 1.09002 * 109.46851 * 63.67160 * 1 2 3 24 24 H 1.08993 * 109.46964 * 183.66942 * 1 2 3 25 25 H 1.09000 * 109.46990 * 239.99465 * 2 1 3 26 26 H 1.09003 * 109.47090 * 304.66787 * 3 2 1 27 27 H 1.09001 * 109.47298 * 64.66524 * 3 2 1 28 28 H 1.08995 * 109.47307 * 184.66579 * 3 2 1 29 29 H 0.96998 * 119.99626 * 5.67758 * 9 8 6 30 30 H 1.09009 * 110.66653 * 278.15647 * 15 14 4 31 31 H 1.09001 * 110.66976 * 41.28455 * 15 14 4 32 32 H 1.08990 * 110.72471 * 204.22940 * 16 15 14 33 33 H 1.09001 * 110.87538 * 81.01192 * 16 15 14 34 34 H 1.09007 * 109.46577 * 189.28224 * 19 17 16 35 35 H 1.09002 * 109.47641 * 309.27599 * 19 17 16 36 36 H 1.00906 * 110.99940 * 56.03843 * 20 19 17 37 37 H 1.00900 * 111.00155 * 179.97438 * 20 19 17 38 38 H 1.08990 * 109.92538 * 333.50894 * 21 14 4 39 39 H 1.09007 * 109.91797 * 94.80462 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6597 -0.2197 2.1391 6 6 3.5467 -0.6962 1.2639 7 1 4.1046 -1.4454 0.7218 8 6 4.2131 0.2833 1.9693 9 7 3.5497 1.0716 2.7867 10 14 6.0581 0.4907 1.7639 11 1 6.7652 -0.3572 2.7572 12 1 6.4529 0.0802 0.3925 13 1 6.4233 1.9139 1.9790 14 7 1.5736 -2.1142 1.2352 15 6 2.0459 -2.8214 0.0174 16 6 1.9375 -4.3161 0.4110 17 6 2.3603 -4.3135 1.8980 18 1 3.4132 -4.5784 1.9940 19 6 1.4934 -5.2877 2.6982 20 7 1.8175 -6.6661 2.3074 21 6 2.1264 -2.8698 2.3801 22 1 -0.3632 0.5698 0.8552 23 1 -0.3633 0.4558 -0.9211 24 1 -0.3633 -1.0255 0.0658 25 1 1.8934 -0.5139 -0.8899 26 1 1.6101 1.9799 -0.8452 27 1 1.7467 1.9316 0.9288 28 1 3.1268 1.4436 -0.0836 29 1 2.6081 0.9122 2.9565 30 1 1.3993 -2.5993 -0.8316 31 1 3.0794 -2.5562 -0.2051 32 1 2.6213 -4.9219 -0.1834 33 1 0.9135 -4.6732 0.3017 34 1 1.6875 -5.1566 3.7628 35 1 0.4411 -5.0900 2.4937 36 1 2.8017 -6.8539 2.4269 37 1 1.2579 -7.3291 2.8227 38 1 3.0704 -2.4265 2.6967 39 1 1.4153 -2.8649 3.2064 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261142812.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:57 Heat of formation + Delta-G solvation = -31.497633 kcal Electronic energy + Delta-G solvation = -16996.094729 eV Core-core repulsion = 14550.878344 eV Total energy + Delta-G solvation = -2445.216384 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.36869 -37.48449 -34.98374 -34.16568 -31.41501 -29.85043 -28.01375 -27.18753 -25.24619 -24.11841 -22.27817 -20.99899 -20.55940 -18.48794 -17.25559 -16.64969 -16.06406 -15.73526 -15.45751 -15.29384 -14.85986 -14.76066 -14.44903 -13.84821 -13.38386 -13.10965 -12.99465 -12.83936 -12.63198 -12.48267 -12.07928 -11.99836 -11.96351 -11.84779 -11.60137 -11.49345 -11.36555 -11.07766 -10.77401 -10.44914 -9.56775 -8.88777 -8.45109 -6.19465 1.48950 1.54785 1.72301 2.55371 3.20247 3.52136 3.58734 3.92963 3.96600 4.13158 4.30993 4.44456 4.55655 4.57429 4.61660 4.65790 4.81692 4.88589 4.92240 4.99379 5.03810 5.06095 5.13931 5.16409 5.25278 5.29131 5.37757 5.43117 5.55048 5.64084 5.72867 6.03763 6.18603 6.23110 6.44431 6.61002 6.65137 6.71622 7.56030 8.84088 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023560 B = 0.010027 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.176722 B = 2791.656668 C = 3530.512640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.078 4.078 3 C -0.114 4.114 4 C 0.191 3.809 5 H 0.013 0.987 6 C -0.610 4.610 7 H 0.039 0.961 8 C -0.007 4.007 9 N -0.928 5.928 10 Si 1.091 2.909 11 H -0.281 1.281 12 H -0.277 1.277 13 H -0.285 1.285 14 N -0.513 5.513 15 C 0.037 3.963 16 C -0.090 4.090 17 C -0.086 4.086 18 H 0.061 0.939 19 C 0.083 3.917 20 N -0.850 5.850 21 C 0.047 3.953 22 H 0.034 0.966 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.026 0.974 28 H 0.036 0.964 29 H 0.258 0.742 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.025 0.975 35 H 0.070 0.930 36 H 0.344 0.656 37 H 0.350 0.650 38 H 0.030 0.970 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.313 -10.214 -2.862 11.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.097 4.097 3 C -0.172 4.172 4 C 0.083 3.917 5 H 0.031 0.969 6 C -0.649 4.649 7 H 0.057 0.943 8 C -0.208 4.208 9 N -0.566 5.566 10 Si 0.916 3.084 11 H -0.207 1.207 12 H -0.202 1.202 13 H -0.211 1.211 14 N -0.236 5.236 15 C -0.092 4.092 16 C -0.128 4.128 17 C -0.106 4.106 18 H 0.080 0.920 19 C -0.048 4.048 20 N -0.381 5.381 21 C -0.082 4.082 22 H 0.053 0.947 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.088 0.912 36 H 0.157 0.843 37 H 0.164 0.836 38 H 0.048 0.952 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.884 -9.025 -3.107 9.971 hybrid contribution 0.124 -0.584 0.859 1.046 sum -2.760 -9.609 -2.248 10.247 Atomic orbital electron populations 1.21684 0.95182 1.01474 1.00133 1.21121 0.94897 0.95483 0.98224 1.21494 1.00244 0.96247 0.99238 1.19519 0.92322 0.86353 0.93544 0.96913 1.22457 0.93489 1.15539 1.33382 0.94262 1.26640 1.08717 0.92974 0.92509 1.70889 1.11431 1.39493 1.34791 0.83276 0.72018 0.76514 0.76597 1.20732 1.20207 1.21082 1.65074 1.54014 1.02769 1.01768 1.23125 0.97961 0.93976 0.94091 1.22297 1.01647 0.94281 0.94543 1.21886 0.98940 0.93425 0.96304 0.92041 1.21681 0.99206 0.88317 0.95593 1.58655 1.11147 1.03154 1.65104 1.22648 0.97897 0.93058 0.94601 0.94694 0.92608 0.92221 0.93272 0.92814 0.95459 0.94482 0.92986 0.91201 0.95394 0.91135 0.90771 0.95680 0.91168 0.84334 0.83622 0.95202 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 9.10 71.98 0.66 -4.08 16 2 C -0.08 -3.38 2.21 -10.79 -0.02 -3.40 16 3 C -0.11 -5.10 8.31 71.98 0.60 -4.50 16 4 C 0.19 9.25 1.66 44.17 0.07 9.32 16 5 H 0.01 0.72 5.96 -2.39 -0.01 0.70 16 6 C -0.61 -32.28 5.28 25.60 0.14 -32.14 16 7 H 0.04 2.14 6.10 -2.91 -0.02 2.12 16 8 C -0.01 -0.41 4.23 84.65 0.36 -0.05 16 9 N -0.93 -54.34 13.30 21.45 0.29 -54.05 16 10 Si 1.09 49.86 29.92 68.60 2.05 51.92 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 14 N -0.51 -21.81 4.56 -862.25 -3.93 -25.74 16 15 C 0.04 1.40 5.19 86.65 0.45 1.85 16 16 C -0.09 -2.83 6.48 31.80 0.21 -2.63 16 17 C -0.09 -2.77 3.16 -9.91 -0.03 -2.80 16 18 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 19 C 0.08 2.16 5.87 86.30 0.51 2.66 16 20 N -0.85 -17.82 9.49 -186.72 -1.77 -19.59 16 21 C 0.05 1.92 6.12 86.45 0.53 2.45 16 22 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.06 2.18 7.53 -2.39 -0.02 2.16 16 25 H 0.05 2.13 6.84 -2.39 -0.02 2.12 16 26 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.03 1.29 8.05 -2.39 -0.02 1.27 16 28 H 0.04 1.80 6.74 -2.39 -0.02 1.78 16 29 H 0.26 15.48 6.45 -92.71 -0.60 14.88 16 30 H 0.07 2.54 7.63 -2.38 -0.02 2.52 16 31 H 0.03 1.21 5.90 -2.39 -0.01 1.20 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.07 2.24 7.76 -2.39 -0.02 2.22 16 34 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.07 1.89 8.00 -2.39 -0.02 1.87 16 36 H 0.34 6.58 8.99 -89.69 -0.81 5.77 16 37 H 0.35 5.76 9.08 -89.69 -0.81 4.94 16 38 H 0.03 1.44 6.34 -2.39 -0.02 1.43 16 39 H 0.05 2.19 7.68 -2.38 -0.02 2.17 16 Total: -1.00 -58.87 294.09 -0.33 -59.19 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -0.42 Total: 21.59 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 3.46 Total: -33.31 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -5.41 Total: -99.38 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 2.05 Total: 51.92 kcal Total: -58.87 -0.33 -59.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142812.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.696 kcal (2) G-P(sol) polarization free energy of solvation -58.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds