Wall clock time and date at job start Mon Mar 30 2020 03:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47129 * 2 1 4 4 C 1.52997 * 109.47173 * 120.00062 * 2 1 3 5 5 H 1.08999 * 109.46900 * 186.05994 * 4 2 1 6 6 C 1.50703 * 109.46780 * 66.06367 * 4 2 1 7 7 H 1.07999 * 119.99682 * 242.69846 * 6 4 2 8 8 C 1.37871 * 120.00286 * 62.70580 * 6 4 2 9 9 N 1.31515 * 120.00323 * 8.45038 * 8 6 4 10 10 Si 1.86802 * 120.00106 * 188.45518 * 8 6 4 11 11 H 1.48503 * 109.46882 * 59.99696 * 10 8 6 12 12 H 1.48501 * 109.46961 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46926 * 299.99715 * 10 8 6 14 14 N 1.46897 * 109.47314 * 306.06358 * 4 2 1 15 15 C 1.47848 * 110.99833 * 283.38797 * 14 4 2 16 16 C 1.54904 * 104.79820 * 213.63783 * 15 14 4 17 17 C 1.55145 * 101.65042 * 37.07134 * 16 15 14 18 18 H 1.09001 * 110.70365 * 82.73294 * 17 16 15 19 19 C 1.53005 * 110.70305 * 205.96496 * 17 16 15 20 20 N 1.46904 * 109.46778 * 288.59809 * 19 17 16 21 21 C 1.47441 * 110.99858 * 162.55091 * 14 4 2 22 22 H 1.09006 * 109.46863 * 304.89610 * 1 2 3 23 23 H 1.09006 * 109.47541 * 64.89442 * 1 2 3 24 24 H 1.08994 * 109.47666 * 184.89976 * 1 2 3 25 25 H 1.09001 * 109.46547 * 240.00518 * 2 1 3 26 26 H 1.08995 * 109.47318 * 163.22304 * 3 2 1 27 27 H 1.09002 * 109.47579 * 283.22858 * 3 2 1 28 28 H 1.09008 * 109.47198 * 43.22476 * 3 2 1 29 29 H 0.97001 * 119.99519 * 6.28629 * 9 8 6 30 30 H 1.09001 * 110.37535 * 332.47109 * 15 14 4 31 31 H 1.09001 * 110.37373 * 94.80630 * 15 14 4 32 32 H 1.09004 * 110.98977 * 278.98061 * 16 15 14 33 33 H 1.09000 * 111.02473 * 155.17426 * 16 15 14 34 34 H 1.08998 * 109.46854 * 48.60104 * 19 17 16 35 35 H 1.09001 * 109.47029 * 168.59807 * 19 17 16 36 36 H 1.00896 * 111.00208 * 56.05185 * 20 19 17 37 37 H 1.00899 * 110.99304 * 180.02562 * 20 19 17 38 38 H 1.09006 * 109.88455 * 242.66047 * 21 14 4 39 39 H 1.09005 * 109.88975 * 3.84631 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1246 -0.6282 1.3051 6 6 1.6639 -2.1788 1.1764 7 1 1.0025 -2.6034 1.9170 8 6 2.1643 -2.9702 0.1643 9 7 3.0956 -2.5017 -0.6375 10 14 1.5195 -4.7079 -0.0681 11 1 0.0597 -4.6623 -0.3367 12 1 2.2140 -5.3441 -1.2162 13 1 1.7718 -5.4983 1.1634 14 7 1.4346 -0.1184 2.4442 15 6 2.0800 1.1706 2.7722 16 6 2.0427 1.2495 4.3188 17 6 2.2940 -0.2295 4.7141 18 1 3.3603 -0.4556 4.7028 19 6 1.6897 -0.5327 6.0867 20 7 2.4833 0.1325 7.1287 21 6 1.5579 -1.0148 3.6083 22 1 -0.3633 0.5880 0.8429 23 1 -0.3634 0.4360 -0.9306 24 1 -0.3634 -1.0238 0.0878 25 1 1.8932 -0.5138 -0.8901 26 1 3.0887 1.4571 0.2966 27 1 1.9394 1.8635 -1.0004 28 1 1.4550 2.0347 0.7039 29 1 3.4953 -1.6354 -0.4624 30 1 3.1103 1.1806 2.4164 31 1 1.5193 1.9975 2.3364 32 1 1.0673 1.5870 4.6691 33 1 2.8358 1.8948 4.6967 34 1 0.6640 -0.1657 6.1211 35 1 1.6963 -1.6094 6.2567 36 1 2.5462 1.1248 6.9571 37 1 2.1043 -0.0529 8.0453 38 1 0.5676 -1.3072 3.9577 39 1 2.1335 -1.8995 3.3359 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261142816.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:59 Heat of formation + Delta-G solvation = -27.564244 kcal Electronic energy + Delta-G solvation = -17000.803410 eV Core-core repulsion = 14555.757590 eV Total energy + Delta-G solvation = -2445.045820 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.52582 -37.54303 -35.03906 -34.11035 -31.43118 -30.18102 -27.93588 -27.34028 -25.40776 -24.33613 -21.83177 -21.11417 -20.70399 -18.55477 -17.15586 -17.00195 -16.41612 -15.70382 -15.30856 -15.11003 -14.80924 -14.70567 -14.14690 -13.94080 -13.68894 -13.46289 -13.15876 -12.92395 -12.69465 -12.63884 -12.42780 -11.98134 -11.78817 -11.71768 -11.64004 -11.58749 -11.39939 -10.98540 -10.46067 -10.36414 -9.61654 -8.95874 -8.53058 -6.22445 1.52307 1.59013 1.77827 2.58047 3.20326 3.38054 3.55659 3.77258 3.82122 4.19167 4.31154 4.39315 4.40189 4.45323 4.47946 4.60063 4.76137 4.78999 4.86405 4.90313 4.94570 5.01240 5.10103 5.17203 5.18169 5.25852 5.32811 5.40460 5.49713 5.63513 5.75527 6.01090 6.12904 6.22641 6.46419 6.58416 6.63376 6.79201 7.52972 8.81810 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024580 B = 0.009598 C = 0.007592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.854099 B = 2916.642044 C = 3687.285204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.090 4.090 3 C -0.139 4.139 4 C 0.214 3.786 5 H -0.051 1.051 6 C -0.587 4.587 7 H 0.051 0.949 8 C -0.026 4.026 9 N -0.935 5.935 10 Si 1.103 2.897 11 H -0.273 1.273 12 H -0.288 1.288 13 H -0.274 1.274 14 N -0.517 5.517 15 C 0.036 3.964 16 C -0.112 4.112 17 C -0.103 4.103 18 H 0.056 0.944 19 C 0.084 3.916 20 N -0.856 5.856 21 C 0.056 3.944 22 H 0.059 0.941 23 H 0.038 0.962 24 H 0.032 0.968 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.256 0.744 30 H 0.020 0.980 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.346 0.654 37 H 0.351 0.649 38 H 0.063 0.937 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.298 7.563 10.669 13.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.110 4.110 3 C -0.196 4.196 4 C 0.106 3.894 5 H -0.034 1.034 6 C -0.626 4.626 7 H 0.069 0.931 8 C -0.224 4.224 9 N -0.573 5.573 10 Si 0.926 3.074 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.241 5.241 15 C -0.092 4.092 16 C -0.150 4.150 17 C -0.123 4.123 18 H 0.074 0.926 19 C -0.047 4.047 20 N -0.387 5.387 21 C -0.073 4.073 22 H 0.078 0.922 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.038 0.962 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.160 0.840 37 H 0.165 0.835 38 H 0.082 0.918 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.138 5.853 9.316 11.754 hybrid contribution 0.347 1.407 0.899 1.706 sum -3.791 7.261 10.215 13.093 Atomic orbital electron populations 1.21343 0.94525 1.00476 0.99558 1.21057 0.96988 0.94693 0.98246 1.22055 0.99632 0.96655 1.01229 1.19373 0.88794 0.93157 0.88045 1.03404 1.22237 1.30767 0.94861 1.14697 0.93089 1.26932 0.94835 1.07723 0.92960 1.70880 1.25871 1.21229 1.39281 0.83119 0.76158 0.71613 0.76531 1.19848 1.21330 1.19944 1.63514 1.54056 1.03080 1.03427 1.23339 0.96243 0.93491 0.96094 1.22754 1.02556 0.95506 0.94161 1.22359 0.99076 0.96125 0.94721 0.92577 1.21566 0.94300 0.99083 0.89786 1.58645 1.57826 1.16812 1.05458 1.22698 0.99148 0.95823 0.89597 0.92189 0.94256 0.94835 0.94463 0.94903 0.93233 0.90840 0.93332 0.96196 0.89522 0.89864 0.89702 0.94306 0.91745 0.84046 0.83502 0.91835 0.94275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.32 8.74 71.98 0.63 -3.69 16 2 C -0.09 -4.20 2.43 -10.80 -0.03 -4.23 16 3 C -0.14 -5.30 7.91 71.98 0.57 -4.73 16 4 C 0.21 10.73 1.03 44.17 0.05 10.78 16 5 H -0.05 -2.94 6.91 -2.39 -0.02 -2.96 16 6 C -0.59 -32.38 6.12 25.60 0.16 -32.23 16 7 H 0.05 2.82 6.55 -2.91 -0.02 2.80 16 8 C -0.03 -1.47 5.16 84.65 0.44 -1.04 16 9 N -0.93 -56.93 12.68 21.45 0.27 -56.66 16 10 Si 1.10 50.79 29.91 68.60 2.05 52.85 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 13 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 14 N -0.52 -21.57 4.10 -864.75 -3.54 -25.11 16 15 C 0.04 1.24 4.96 86.77 0.43 1.67 16 16 C -0.11 -3.03 5.92 31.98 0.19 -2.84 16 17 C -0.10 -3.20 3.16 -9.61 -0.03 -3.23 16 18 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 19 C 0.08 2.07 6.13 86.30 0.53 2.60 16 20 N -0.86 -17.54 9.62 -186.70 -1.80 -19.34 16 21 C 0.06 2.22 5.32 86.65 0.46 2.68 16 22 H 0.06 2.37 7.54 -2.38 -0.02 2.35 16 23 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 24 H 0.03 1.56 7.27 -2.39 -0.02 1.54 16 25 H 0.04 2.01 6.18 -2.39 -0.01 1.99 16 26 H 0.03 1.27 7.23 -2.39 -0.02 1.26 16 27 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 2.49 5.39 -2.38 -0.01 2.47 16 29 H 0.26 15.94 6.32 -92.71 -0.59 15.35 16 30 H 0.02 0.76 6.73 -2.39 -0.02 0.74 16 31 H 0.09 2.73 5.99 -2.39 -0.01 2.72 16 32 H 0.08 2.00 7.94 -2.39 -0.02 1.98 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.04 0.88 8.00 -2.39 -0.02 0.86 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.35 6.17 8.42 -89.70 -0.76 5.42 16 37 H 0.35 5.57 9.08 -89.69 -0.81 4.75 16 38 H 0.06 2.41 7.82 -2.38 -0.02 2.39 16 39 H 0.04 1.84 6.08 -2.38 -0.01 1.82 16 Total: -1.00 -63.28 288.67 0.03 -63.25 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -0.35 Total: 19.27 kcal Atomic # 6 Polarization: -37.65 SS G_CDS: 3.39 Total: -34.26 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -5.07 Total: -101.11 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 2.05 Total: 52.85 kcal Total: -63.28 0.03 -63.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142816.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.685 kcal (2) G-P(sol) polarization free energy of solvation -63.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds