Wall clock time and date at job start Mon Mar 30 2020 03:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46991 * 2 1 4 4 C 1.52997 * 109.47169 * 239.99637 * 2 1 3 5 5 C 1.52998 * 109.46858 * 119.99822 * 2 1 3 6 6 H 1.08999 * 109.47334 * 293.72010 * 5 2 1 7 7 C 1.50697 * 109.47172 * 53.72324 * 5 2 1 8 8 H 1.07995 * 120.00424 * 89.15213 * 7 5 2 9 9 C 1.37882 * 120.00017 * 269.14784 * 7 5 2 10 10 N 1.31509 * 120.00060 * 343.37194 * 9 7 5 11 11 Si 1.86802 * 120.00221 * 163.37024 * 9 7 5 12 12 H 1.48501 * 109.46801 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47167 * 119.99970 * 11 9 7 14 14 H 1.48499 * 109.47344 * 240.00439 * 11 9 7 15 15 N 1.46902 * 109.47156 * 173.72093 * 5 2 1 16 16 C 1.46959 * 111.00009 * 80.62121 * 15 5 2 17 17 C 1.53045 * 109.36514 * 183.18883 * 16 15 5 18 18 N 1.46955 * 109.36551 * 301.59857 * 17 16 15 19 19 C 1.46959 * 110.87937 * 59.31973 * 18 17 16 20 20 C 1.46955 * 111.00170 * 204.42070 * 15 5 2 21 21 H 1.08998 * 109.47521 * 295.63475 * 1 2 3 22 22 H 1.09005 * 109.47320 * 55.63241 * 1 2 3 23 23 H 1.09000 * 109.47282 * 175.63637 * 1 2 3 24 24 H 1.09000 * 109.47357 * 203.85643 * 3 2 1 25 25 H 1.09001 * 109.47463 * 323.86282 * 3 2 1 26 26 H 1.09005 * 109.47493 * 83.85928 * 3 2 1 27 27 H 1.08997 * 109.47268 * 300.00143 * 4 2 1 28 28 H 1.09005 * 109.46765 * 60.00494 * 4 2 1 29 29 H 1.08999 * 109.47306 * 179.97438 * 4 2 1 30 30 H 0.97004 * 120.00572 * 180.02562 * 10 9 7 31 31 H 1.09005 * 109.48641 * 303.15719 * 16 15 5 32 32 H 1.09007 * 109.48713 * 63.21919 * 16 15 5 33 33 H 1.09001 * 109.48616 * 181.62864 * 17 16 15 34 34 H 1.09007 * 109.49056 * 61.57041 * 17 16 15 35 35 H 1.00895 * 110.99720 * 295.45224 * 18 17 16 36 36 H 1.08996 * 109.48700 * 180.71027 * 19 18 17 37 37 H 1.08999 * 109.48653 * 60.64641 * 19 18 17 38 38 H 1.09003 * 109.48683 * 296.77749 * 20 15 5 39 39 H 1.08998 * 109.48980 * 56.82208 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 1.7713 -0.1466 2.1357 7 6 1.4148 -2.0900 1.3294 8 1 1.8946 -2.9317 0.8522 9 6 0.2302 -2.2680 2.0122 10 7 -0.1867 -1.3497 2.8563 11 14 -0.7828 -3.8135 1.7382 12 1 -0.1002 -4.6834 0.7469 13 1 -0.9264 -4.5453 3.0223 14 1 -2.1266 -3.4406 1.2278 15 7 3.5011 -0.8538 1.1760 16 6 4.1641 0.3932 1.5821 17 6 5.6779 0.2405 1.4163 18 7 6.1456 -0.8904 2.2300 19 6 5.4825 -2.1375 1.8238 20 6 3.9688 -1.9847 1.9896 21 1 -0.3634 0.4446 0.9265 22 1 -0.3634 0.5801 -0.8483 23 1 -0.3634 -1.0247 -0.0782 24 1 3.0472 1.4718 -0.4156 25 1 1.3786 2.0617 -0.6060 26 1 2.0574 1.8217 1.0218 27 1 1.6767 -1.7489 -1.2491 28 1 1.6767 -0.2074 -2.1392 29 1 3.1300 -0.7209 -1.2494 30 1 -1.0199 -1.4750 3.3369 31 1 3.8107 1.2133 0.9570 32 1 3.9322 0.6052 2.6259 33 1 6.1736 1.1541 1.7443 34 1 5.9121 0.0556 0.3679 35 1 6.0065 -0.7105 3.2130 36 1 5.8360 -2.9574 2.4489 37 1 5.7145 -2.3493 0.7801 38 1 3.7347 -1.7997 3.0380 39 1 3.4727 -2.8982 1.6619 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261153914.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:46 Heat of formation + Delta-G solvation = 6.836258 kcal Electronic energy + Delta-G solvation = -17505.267846 eV Core-core repulsion = 15061.713744 eV Total energy + Delta-G solvation = -2443.554102 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.84604 -36.30531 -32.64119 -32.16446 -30.32219 -27.26263 -26.11358 -25.93272 -24.45874 -22.44962 -21.82218 -19.58707 -17.87046 -16.17521 -15.69496 -14.70667 -14.36864 -14.02207 -13.97944 -13.69098 -12.93826 -12.84271 -12.65245 -12.32782 -11.89512 -11.51736 -11.22038 -11.11581 -10.93920 -10.76090 -10.62855 -10.51746 -10.48418 -10.36808 -10.00253 -9.72336 -9.51903 -9.36373 -8.78903 -8.37996 -7.83281 -7.04912 -6.11689 -4.05809 3.24116 3.34499 3.38540 4.37138 4.73126 4.98308 5.19940 5.70683 5.78203 5.82194 5.93380 6.00804 6.02259 6.09435 6.11710 6.19124 6.33368 6.47461 6.54103 6.64554 6.73268 6.77812 6.81238 6.84745 6.93852 7.11387 7.18005 7.35846 7.44816 7.51329 7.65201 7.71955 7.74999 7.80910 8.02985 8.26268 8.65501 9.03079 9.54381 10.97346 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025737 B = 0.011599 C = 0.009262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.678997 B = 2413.419522 C = 3022.258019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.049 4.049 3 C -0.141 4.141 4 C -0.114 4.114 5 C 0.212 3.788 6 H 0.032 0.968 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.075 3.925 10 N -0.882 5.882 11 Si 0.876 3.124 12 H -0.271 1.271 13 H -0.287 1.287 14 H -0.282 1.282 15 N -0.528 5.528 16 C -0.004 4.004 17 C 0.061 3.939 18 N -0.692 5.692 19 C 0.054 3.946 20 C 0.037 3.963 21 H 0.053 0.947 22 H 0.018 0.982 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.034 0.966 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.019 0.981 29 H 0.052 0.948 30 H 0.260 0.740 31 H 0.090 0.910 32 H 0.016 0.984 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.332 0.668 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.020 0.980 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.188 2.502 -2.811 7.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.050 4.050 3 C -0.198 4.198 4 C -0.172 4.172 5 C 0.106 3.894 6 H 0.050 0.950 7 C -0.548 4.548 8 H 0.080 0.920 9 C -0.128 4.128 10 N -0.520 5.520 11 Si 0.704 3.296 12 H -0.195 1.195 13 H -0.213 1.213 14 H -0.208 1.208 15 N -0.252 5.252 16 C -0.134 4.134 17 C -0.069 4.069 18 N -0.320 5.320 19 C -0.075 4.075 20 C -0.093 4.093 21 H 0.072 0.928 22 H 0.037 0.963 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.035 0.965 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.148 0.852 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.038 0.962 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.741 2.336 -3.565 7.975 hybrid contribution -1.967 -0.465 1.216 2.359 sum 4.774 1.871 -2.348 5.640 Atomic orbital electron populations 1.21658 0.95347 1.01384 0.98996 1.20518 0.94791 0.92355 0.97313 1.22201 0.99569 0.98020 1.00031 1.21589 1.00513 1.00055 0.94999 1.19494 0.81123 0.96286 0.92455 0.94987 1.21006 1.06590 0.93995 1.33254 0.92034 1.24860 0.97949 0.96042 0.93968 1.69994 1.22083 1.35286 1.24643 0.86797 0.80798 0.83910 0.78136 1.19546 1.21312 1.20823 1.62193 1.09073 1.01315 1.52664 1.23278 0.95505 0.96047 0.98543 1.22056 0.93191 0.93017 0.98675 1.60857 1.59714 1.03590 1.07811 1.22195 0.92845 0.91313 1.01178 1.22560 0.94026 0.97456 0.95246 0.92767 0.96339 0.92260 0.93024 0.94663 0.93717 0.92822 0.96196 0.92856 0.93020 0.89201 0.96537 0.91761 0.90820 0.85224 0.91620 0.90936 0.96193 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 7.31 37.16 0.27 -2.31 16 2 C -0.05 -1.03 0.62 -154.51 -0.10 -1.13 16 3 C -0.14 -2.63 7.14 37.16 0.27 -2.37 16 4 C -0.11 -2.28 7.95 37.16 0.30 -1.99 16 5 C 0.21 4.97 1.35 -68.87 -0.09 4.88 16 6 H 0.03 0.88 6.90 -51.93 -0.36 0.52 16 7 C -0.51 -12.96 5.05 -34.44 -0.17 -13.13 16 8 H 0.06 1.60 6.57 -52.49 -0.35 1.26 16 9 C 0.07 1.96 3.79 -17.82 -0.07 1.89 16 10 N -0.88 -24.22 12.27 55.43 0.68 -23.54 16 11 Si 0.88 20.54 29.57 -169.99 -5.03 15.52 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 N -0.53 -10.83 3.52 -227.88 -0.80 -11.64 16 16 C 0.00 -0.07 5.01 -3.77 -0.02 -0.09 16 17 C 0.06 0.94 6.72 -3.77 -0.03 0.92 16 18 N -0.69 -10.85 6.91 -113.64 -0.79 -11.63 16 19 C 0.05 0.90 6.72 -3.77 -0.03 0.88 16 20 C 0.04 0.74 4.97 -3.77 -0.02 0.72 16 21 H 0.05 1.30 7.72 -51.93 -0.40 0.90 16 22 H 0.02 0.35 8.03 -51.93 -0.42 -0.06 16 23 H 0.06 1.41 6.51 -51.93 -0.34 1.07 16 24 H 0.05 0.89 6.38 -51.93 -0.33 0.56 16 25 H 0.03 0.61 7.85 -51.93 -0.41 0.20 16 26 H 0.04 0.85 7.05 -51.93 -0.37 0.49 16 27 H 0.05 1.15 7.42 -51.93 -0.39 0.76 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 1.05 7.42 -51.93 -0.39 0.66 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.09 1.59 3.70 -51.93 -0.19 1.40 16 32 H 0.02 0.33 8.13 -51.93 -0.42 -0.10 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 35 H 0.33 4.99 8.89 -39.29 -0.35 4.64 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.09 2.00 5.83 -51.93 -0.30 1.70 16 LS Contribution 285.76 15.07 4.31 4.31 Total: -1.00 -26.19 285.76 -7.99 -34.18 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.67 Total: 4.53 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 0.31 Total: -11.72 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.91 Total: -46.81 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.19 -7.99 -34.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261153914.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.013 kcal (2) G-P(sol) polarization free energy of solvation -26.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds