Wall clock time and date at job start Mon Mar 30 2020 03:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46991 * 2 1 4 4 C 1.52997 * 109.47169 * 239.99637 * 2 1 3 5 5 C 1.52998 * 109.46858 * 119.99822 * 2 1 3 6 6 H 1.08999 * 109.47334 * 293.72010 * 5 2 1 7 7 C 1.50697 * 109.47172 * 53.72324 * 5 2 1 8 8 H 1.07995 * 120.00424 * 89.15213 * 7 5 2 9 9 C 1.37882 * 120.00017 * 269.14784 * 7 5 2 10 10 N 1.31509 * 120.00060 * 343.37194 * 9 7 5 11 11 Si 1.86802 * 120.00221 * 163.37024 * 9 7 5 12 12 H 1.48501 * 109.46801 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47167 * 119.99970 * 11 9 7 14 14 H 1.48499 * 109.47344 * 240.00439 * 11 9 7 15 15 N 1.46902 * 109.47156 * 173.72093 * 5 2 1 16 16 C 1.46959 * 111.00009 * 80.62121 * 15 5 2 17 17 C 1.53045 * 109.36514 * 183.18883 * 16 15 5 18 18 N 1.46955 * 109.36551 * 301.59857 * 17 16 15 19 19 C 1.46959 * 110.87937 * 59.31973 * 18 17 16 20 20 C 1.46955 * 111.00170 * 204.42070 * 15 5 2 21 21 H 1.08998 * 109.47521 * 295.63475 * 1 2 3 22 22 H 1.09005 * 109.47320 * 55.63241 * 1 2 3 23 23 H 1.09000 * 109.47282 * 175.63637 * 1 2 3 24 24 H 1.09000 * 109.47357 * 203.85643 * 3 2 1 25 25 H 1.09001 * 109.47463 * 323.86282 * 3 2 1 26 26 H 1.09005 * 109.47493 * 83.85928 * 3 2 1 27 27 H 1.08997 * 109.47268 * 300.00143 * 4 2 1 28 28 H 1.09005 * 109.46765 * 60.00494 * 4 2 1 29 29 H 1.08999 * 109.47306 * 179.97438 * 4 2 1 30 30 H 0.97004 * 120.00572 * 180.02562 * 10 9 7 31 31 H 1.09005 * 109.48641 * 303.15719 * 16 15 5 32 32 H 1.09007 * 109.48713 * 63.21919 * 16 15 5 33 33 H 1.09001 * 109.48616 * 181.62864 * 17 16 15 34 34 H 1.09007 * 109.49056 * 61.57041 * 17 16 15 35 35 H 1.00895 * 110.99720 * 295.45224 * 18 17 16 36 36 H 1.08996 * 109.48700 * 180.71027 * 19 18 17 37 37 H 1.08999 * 109.48653 * 60.64641 * 19 18 17 38 38 H 1.09003 * 109.48683 * 296.77749 * 20 15 5 39 39 H 1.08998 * 109.48980 * 56.82208 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 1.7713 -0.1466 2.1357 7 6 1.4148 -2.0900 1.3294 8 1 1.8946 -2.9317 0.8522 9 6 0.2302 -2.2680 2.0122 10 7 -0.1867 -1.3497 2.8563 11 14 -0.7828 -3.8135 1.7382 12 1 -0.1002 -4.6834 0.7469 13 1 -0.9264 -4.5453 3.0223 14 1 -2.1266 -3.4406 1.2278 15 7 3.5011 -0.8538 1.1760 16 6 4.1641 0.3932 1.5821 17 6 5.6779 0.2405 1.4163 18 7 6.1456 -0.8904 2.2300 19 6 5.4825 -2.1375 1.8238 20 6 3.9688 -1.9847 1.9896 21 1 -0.3634 0.4446 0.9265 22 1 -0.3634 0.5801 -0.8483 23 1 -0.3634 -1.0247 -0.0782 24 1 3.0472 1.4718 -0.4156 25 1 1.3786 2.0617 -0.6060 26 1 2.0574 1.8217 1.0218 27 1 1.6767 -1.7489 -1.2491 28 1 1.6767 -0.2074 -2.1392 29 1 3.1300 -0.7209 -1.2494 30 1 -1.0199 -1.4750 3.3369 31 1 3.8107 1.2133 0.9570 32 1 3.9322 0.6052 2.6259 33 1 6.1736 1.1541 1.7443 34 1 5.9121 0.0556 0.3679 35 1 6.0065 -0.7105 3.2130 36 1 5.8360 -2.9574 2.4489 37 1 5.7145 -2.3493 0.7801 38 1 3.7347 -1.7997 3.0380 39 1 3.4727 -2.8982 1.6619 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261153914.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:45 Heat of formation + Delta-G solvation = -10.684372 kcal Electronic energy + Delta-G solvation = -17506.027597 eV Core-core repulsion = 15061.713744 eV Total energy + Delta-G solvation = -2444.313854 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.45051 -37.88197 -34.50363 -33.83422 -31.81480 -29.01142 -27.75692 -27.64665 -26.18384 -23.92859 -23.48501 -21.10363 -19.63069 -18.12062 -17.29888 -16.36574 -16.00436 -15.61396 -15.53282 -15.31331 -14.57724 -14.45857 -14.34252 -13.94398 -13.65810 -13.15805 -12.86391 -12.67212 -12.62690 -12.57454 -12.26160 -12.21400 -11.98712 -11.97222 -11.80070 -11.44718 -11.22717 -11.04970 -10.62769 -10.38945 -9.24425 -8.78533 -8.14797 -6.12391 1.33832 1.40045 1.48604 2.40861 3.13602 3.33470 3.52500 4.28338 4.32476 4.37955 4.41479 4.44646 4.50433 4.55850 4.58621 4.79233 4.84575 4.98451 5.00578 5.06840 5.11138 5.18073 5.20674 5.28336 5.29608 5.35938 5.43955 5.62501 5.69428 5.79648 5.88677 5.93726 6.07305 6.23164 6.39385 6.50135 6.86292 7.03450 7.50337 8.94284 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025737 B = 0.011599 C = 0.009262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.678997 B = 2413.419522 C = 3022.258019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.053 4.053 3 C -0.132 4.132 4 C -0.103 4.103 5 C 0.219 3.781 6 H -0.015 1.015 7 C -0.507 4.507 8 H 0.053 0.947 9 C 0.035 3.965 10 N -0.914 5.914 11 Si 0.926 3.074 12 H -0.266 1.266 13 H -0.288 1.288 14 H -0.281 1.281 15 N -0.524 5.524 16 C -0.003 4.003 17 C 0.068 3.932 18 N -0.685 5.685 19 C 0.067 3.933 20 C 0.041 3.959 21 H 0.027 0.973 22 H 0.045 0.955 23 H 0.036 0.964 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.031 0.969 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.258 0.742 31 H 0.098 0.902 32 H -0.005 1.005 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.336 0.664 36 H 0.084 0.916 37 H 0.076 0.924 38 H -0.009 1.009 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.646 2.894 -4.275 9.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.055 4.055 3 C -0.189 4.189 4 C -0.161 4.161 5 C 0.112 3.888 6 H 0.003 0.997 7 C -0.546 4.546 8 H 0.071 0.929 9 C -0.165 4.165 10 N -0.553 5.553 11 Si 0.753 3.247 12 H -0.190 1.190 13 H -0.215 1.215 14 H -0.207 1.207 15 N -0.249 5.249 16 C -0.133 4.133 17 C -0.062 4.062 18 N -0.313 5.313 19 C -0.063 4.063 20 C -0.089 4.089 21 H 0.046 0.954 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.116 0.884 32 H 0.014 0.986 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.153 0.847 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.009 0.991 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.217 2.723 -5.035 10.015 hybrid contribution -2.396 -0.571 1.693 2.989 sum 5.821 2.151 -3.342 7.049 Atomic orbital electron populations 1.21564 0.96231 1.00086 0.98706 1.20504 0.94108 0.94127 0.96718 1.22077 1.00906 0.96091 0.99838 1.21463 1.00625 0.98873 0.95088 1.19315 0.82943 0.94715 0.91819 0.99712 1.21175 1.06495 0.94732 1.32186 0.92887 1.25404 0.98907 0.98250 0.93959 1.70110 1.22379 1.37000 1.25821 0.86003 0.79549 0.81292 0.77865 1.19005 1.21457 1.20725 1.62234 1.07466 1.02612 1.52546 1.23375 0.97502 0.95030 0.97355 1.22084 0.90871 0.94126 0.99096 1.60882 1.58870 1.03290 1.08264 1.22092 0.89747 0.92514 1.01905 1.22537 0.96760 0.96379 0.93254 0.95429 0.93599 0.94524 0.91199 0.92854 0.94966 0.94837 0.93780 0.92428 0.93314 0.88375 0.98637 0.89026 0.90311 0.84694 0.89764 0.90532 0.99072 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.78 7.31 71.98 0.53 -4.25 16 2 C -0.05 -2.22 0.62 -52.18 -0.03 -2.26 16 3 C -0.13 -4.67 7.14 71.98 0.51 -4.15 16 4 C -0.10 -3.92 7.95 71.98 0.57 -3.35 16 5 C 0.22 10.43 1.35 44.17 0.06 10.49 16 6 H -0.01 -0.85 6.90 -2.39 -0.02 -0.87 16 7 C -0.51 -26.39 5.05 25.60 0.13 -26.26 16 8 H 0.05 2.82 6.57 -2.91 -0.02 2.80 16 9 C 0.03 1.86 3.79 84.66 0.32 2.18 16 10 N -0.91 -51.98 12.27 21.45 0.26 -51.72 16 11 Si 0.93 42.95 29.57 68.60 2.03 44.98 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 14 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 15 N -0.52 -21.39 3.52 -874.88 -3.08 -24.47 16 16 C 0.00 -0.11 5.01 86.31 0.43 0.33 16 17 C 0.07 1.92 6.72 86.31 0.58 2.50 16 18 N -0.69 -19.78 6.91 -513.45 -3.55 -23.33 16 19 C 0.07 2.11 6.72 86.31 0.58 2.69 16 20 C 0.04 1.64 4.97 86.31 0.43 2.07 16 21 H 0.03 1.33 7.72 -2.39 -0.02 1.31 16 22 H 0.05 1.72 8.03 -2.38 -0.02 1.70 16 23 H 0.04 1.74 6.51 -2.39 -0.02 1.73 16 24 H 0.07 2.20 6.38 -2.39 -0.02 2.19 16 25 H 0.05 1.69 7.85 -2.39 -0.02 1.67 16 26 H 0.03 1.20 7.05 -2.38 -0.02 1.18 16 27 H 0.03 1.38 7.42 -2.39 -0.02 1.36 16 28 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.06 2.12 7.42 -2.39 -0.02 2.10 16 30 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 31 H 0.10 3.29 3.70 -2.38 -0.01 3.28 16 32 H 0.00 -0.18 8.13 -2.38 -0.02 -0.20 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.34 9.44 8.89 -89.70 -0.80 8.65 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 38 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.07 3.11 5.83 -2.39 -0.01 3.10 16 Total: -1.00 -57.33 285.76 -0.01 -57.34 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.22 Total: 17.20 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: 4.11 Total: -20.00 kcal Atomic # 7 Polarization: -93.15 SS G_CDS: -6.37 Total: -99.52 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -57.33 -0.01 -57.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261153914.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.651 kcal (2) G-P(sol) polarization free energy of solvation -57.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds