Wall clock time and date at job start Mon Mar 30 2020 03:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47071 * 2 1 4 4 C 1.52994 * 109.47463 * 120.00407 * 2 1 3 5 5 H 1.09005 * 109.46968 * 180.45670 * 4 2 1 6 6 C 1.50704 * 109.47167 * 300.45508 * 4 2 1 7 7 H 1.07999 * 120.00070 * 84.65685 * 6 4 2 8 8 C 1.37877 * 119.99651 * 264.66196 * 6 4 2 9 9 N 1.31513 * 120.00298 * 357.81217 * 8 6 4 10 10 Si 1.86809 * 119.99738 * 177.80846 * 8 6 4 11 11 H 1.48497 * 109.47201 * 89.99807 * 10 8 6 12 12 H 1.48498 * 109.46875 * 210.00169 * 10 8 6 13 13 H 1.48498 * 109.46885 * 329.99656 * 10 8 6 14 14 N 1.46897 * 109.47420 * 60.45446 * 4 2 1 15 15 C 1.46851 * 110.99688 * 65.35473 * 14 4 2 16 16 C 1.53043 * 109.51985 * 185.84009 * 15 14 4 17 17 C 1.53118 * 109.27859 * 300.82459 * 16 15 14 18 18 C 1.53121 * 109.16116 * 57.65597 * 17 16 15 19 19 H 1.09000 * 109.50078 * 62.28613 * 18 17 16 20 20 N 1.46905 * 109.49924 * 182.40409 * 18 17 16 21 21 C 1.46847 * 111.00332 * 189.56606 * 14 4 2 22 22 H 1.09007 * 109.47128 * 305.34657 * 1 2 3 23 23 H 1.08998 * 109.47303 * 65.34702 * 1 2 3 24 24 H 1.09005 * 109.47317 * 185.35240 * 1 2 3 25 25 H 1.09004 * 109.47239 * 240.01045 * 2 1 3 26 26 H 1.08995 * 109.47662 * 175.91297 * 3 2 1 27 27 H 1.09002 * 109.48003 * 295.91742 * 3 2 1 28 28 H 1.09004 * 109.47530 * 55.91392 * 3 2 1 29 29 H 0.97002 * 119.99939 * 180.02562 * 9 8 6 30 30 H 1.09000 * 109.46364 * 305.85860 * 15 14 4 31 31 H 1.08993 * 109.46252 * 65.82875 * 15 14 4 32 32 H 1.09002 * 109.49888 * 60.76353 * 16 15 14 33 33 H 1.09002 * 109.50187 * 180.87978 * 16 15 14 34 34 H 1.08997 * 109.52268 * 297.74311 * 17 16 15 35 35 H 1.09007 * 109.57199 * 177.59089 * 17 16 15 36 36 H 1.00900 * 110.99891 * 299.79920 * 20 18 17 37 37 H 1.00898 * 111.00129 * 63.75526 * 20 18 17 38 38 H 1.09000 * 109.46187 * 294.17678 * 21 14 4 39 39 H 1.08999 * 109.45984 * 54.15382 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 3.1300 -0.7142 1.2531 6 6 1.5285 -0.0175 2.4797 7 1 0.5472 -0.2500 2.8660 8 6 2.3134 0.9232 3.1121 9 7 3.5250 1.1753 2.6671 10 14 1.6558 1.8398 4.6011 11 1 1.9968 1.0880 5.8355 12 1 2.2672 3.1917 4.6599 13 1 0.1804 1.9681 4.4914 14 7 1.5594 -2.1094 1.2436 15 6 2.1410 -2.8632 0.1255 16 6 1.5098 -4.2560 0.0646 17 6 1.7673 -4.9861 1.3856 18 6 1.1943 -4.1566 2.5382 19 1 0.1154 -4.0612 2.4165 20 7 1.4879 -4.8221 3.8145 21 6 1.8348 -2.7668 2.5275 22 1 -0.3634 0.5946 0.8383 23 1 -0.3634 0.4286 -0.9340 24 1 -0.3634 -1.0232 0.0959 25 1 1.8933 -0.5137 -0.8901 26 1 3.1274 1.4435 0.0732 27 1 1.7376 1.9349 -0.9243 28 1 1.6181 1.9771 0.8511 29 1 4.0773 1.8369 3.1123 30 1 1.9472 -2.3353 -0.8082 31 1 3.2168 -2.9582 0.2723 32 1 0.4357 -4.1620 -0.0959 33 1 1.9528 -4.8208 -0.7558 34 1 2.8403 -5.1147 1.5276 35 1 1.2831 -5.9625 1.3637 36 1 1.0752 -5.7424 3.8457 37 1 2.4824 -4.8660 3.9791 38 1 2.9121 -2.8623 2.6629 39 1 1.4184 -2.1690 3.3383 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261161699.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:44 Heat of formation + Delta-G solvation = -14.165639 kcal Electronic energy + Delta-G solvation = -17164.448543 eV Core-core repulsion = 14719.983730 eV Total energy + Delta-G solvation = -2444.464813 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.65162 -35.82811 -33.08955 -31.89753 -31.21359 -27.59221 -26.39225 -25.81126 -23.95874 -21.71798 -21.54367 -19.30025 -18.37214 -16.07166 -15.63483 -15.39103 -14.32188 -14.16126 -13.72536 -13.51190 -13.15571 -13.08404 -12.73826 -12.29816 -11.91656 -11.74886 -11.19565 -11.01199 -10.82812 -10.70838 -10.68255 -10.48241 -10.34470 -10.15163 -9.86345 -9.76814 -9.41037 -9.31534 -8.65749 -8.39165 -8.30841 -7.03515 -5.98035 -3.99241 3.33316 3.40484 3.44651 4.44816 4.71426 5.11069 5.25465 5.29504 5.39217 5.60510 5.76625 5.94671 6.06488 6.16602 6.21094 6.25379 6.33925 6.40568 6.48839 6.56200 6.60535 6.75244 6.85967 6.96240 7.03959 7.20197 7.21696 7.45910 7.49623 7.55873 7.70857 7.73422 7.75214 7.92529 8.13308 8.34997 8.71311 9.12760 9.63735 11.09263 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024191 B = 0.010919 C = 0.008470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.153701 B = 2563.644946 C = 3304.879771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.074 4.074 3 C -0.118 4.118 4 C 0.207 3.793 5 H 0.030 0.970 6 C -0.493 4.493 7 H 0.060 0.940 8 C 0.066 3.934 9 N -0.891 5.891 10 Si 0.886 3.114 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.273 1.273 14 N -0.533 5.533 15 C 0.050 3.950 16 C -0.110 4.110 17 C -0.150 4.150 18 C 0.090 3.910 19 H 0.082 0.918 20 N -0.843 5.843 21 C 0.083 3.917 22 H 0.055 0.945 23 H 0.017 0.983 24 H 0.052 0.948 25 H 0.028 0.972 26 H 0.052 0.948 27 H 0.014 0.986 28 H 0.061 0.939 29 H 0.259 0.741 30 H 0.069 0.931 31 H 0.017 0.983 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.333 0.667 37 H 0.336 0.664 38 H 0.014 0.986 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.404 -8.465 -3.344 9.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.093 4.093 3 C -0.176 4.176 4 C 0.101 3.899 5 H 0.048 0.952 6 C -0.532 4.532 7 H 0.078 0.922 8 C -0.136 4.136 9 N -0.529 5.529 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.198 1.198 14 N -0.258 5.258 15 C -0.078 4.078 16 C -0.148 4.148 17 C -0.190 4.190 18 C -0.022 4.022 19 H 0.100 0.900 20 N -0.371 5.371 21 C -0.046 4.046 22 H 0.074 0.926 23 H 0.036 0.964 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.035 0.965 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.032 0.968 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.159 -7.714 -3.019 8.866 hybrid contribution 1.229 -0.227 0.277 1.281 sum -1.929 -7.941 -2.742 8.619 Atomic orbital electron populations 1.21580 0.96490 1.01160 0.98692 1.21091 0.95232 0.96000 0.97002 1.21547 1.01303 0.96156 0.98548 1.19463 0.94919 0.81943 0.93534 0.95225 1.20922 1.01812 1.20527 1.09937 0.92170 1.24903 0.94694 0.97132 0.96850 1.69942 1.08348 1.33829 1.40805 0.86689 0.79301 0.79171 0.83462 1.20763 1.21446 1.19804 1.61993 1.59167 1.03865 1.00759 1.22065 0.95515 0.93580 0.96673 1.21499 1.01422 0.95948 0.95962 1.22427 1.00412 0.98562 0.97599 1.21604 1.00605 0.94411 0.85546 0.89958 1.58836 1.17988 1.25083 1.35177 1.21745 0.96547 0.92122 0.94196 0.92595 0.96382 0.92883 0.95396 0.92849 0.96698 0.91965 0.93120 0.91314 0.96496 0.91526 0.92871 0.92958 0.93120 0.85529 0.85227 0.96822 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.51 8.76 37.15 0.33 -2.18 16 2 C -0.07 -1.63 2.54 -90.63 -0.23 -1.86 16 3 C -0.12 -2.67 8.04 37.16 0.30 -2.37 16 4 C 0.21 4.97 1.46 -68.87 -0.10 4.87 16 5 H 0.03 0.83 7.25 -51.93 -0.38 0.45 16 6 C -0.49 -12.81 4.76 -34.44 -0.16 -12.98 16 7 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 8 C 0.07 1.76 4.36 -17.82 -0.08 1.68 16 9 N -0.89 -24.65 11.75 55.43 0.65 -24.00 16 10 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 14 N -0.53 -11.17 3.68 -228.08 -0.84 -12.00 16 15 C 0.05 0.92 5.29 -3.83 -0.02 0.90 16 16 C -0.11 -1.65 6.09 -26.65 -0.16 -1.81 16 17 C -0.15 -2.16 5.57 -26.61 -0.15 -2.31 16 18 C 0.09 1.47 3.41 -67.63 -0.23 1.24 16 19 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 20 N -0.84 -12.20 9.26 -4.60 -0.04 -12.24 16 21 C 0.08 1.69 4.70 -3.84 -0.02 1.67 16 22 H 0.05 1.23 7.40 -51.93 -0.38 0.84 16 23 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 1.08 7.46 -51.93 -0.39 0.69 16 25 H 0.03 0.59 6.39 -51.93 -0.33 0.26 16 26 H 0.05 1.29 7.80 -51.93 -0.40 0.88 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 1.53 6.72 -51.93 -0.35 1.18 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.07 1.25 6.19 -51.93 -0.32 0.93 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.33 3.95 9.04 -39.29 -0.36 3.60 16 37 H 0.34 4.63 8.98 -39.29 -0.35 4.27 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.10 2.24 6.47 -51.93 -0.34 1.91 16 LS Contribution 293.43 15.07 4.42 4.42 Total: -1.00 -26.69 293.43 -8.30 -34.99 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.94 Total: 5.88 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -0.53 Total: -13.13 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.23 Total: -48.25 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -26.69 -8.30 -34.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161699.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.823 kcal (2) G-P(sol) polarization free energy of solvation -26.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds