Wall clock time and date at job start Mon Mar 30 2020 03:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47071 * 2 1 4 4 C 1.52994 * 109.47463 * 120.00407 * 2 1 3 5 5 H 1.09005 * 109.46968 * 180.45670 * 4 2 1 6 6 C 1.50704 * 109.47167 * 300.45508 * 4 2 1 7 7 H 1.07999 * 120.00070 * 84.65685 * 6 4 2 8 8 C 1.37877 * 119.99651 * 264.66196 * 6 4 2 9 9 N 1.31513 * 120.00298 * 357.81217 * 8 6 4 10 10 Si 1.86809 * 119.99738 * 177.80846 * 8 6 4 11 11 H 1.48497 * 109.47201 * 89.99807 * 10 8 6 12 12 H 1.48498 * 109.46875 * 210.00169 * 10 8 6 13 13 H 1.48498 * 109.46885 * 329.99656 * 10 8 6 14 14 N 1.46897 * 109.47420 * 60.45446 * 4 2 1 15 15 C 1.46851 * 110.99688 * 65.35473 * 14 4 2 16 16 C 1.53043 * 109.51985 * 185.84009 * 15 14 4 17 17 C 1.53118 * 109.27859 * 300.82459 * 16 15 14 18 18 C 1.53121 * 109.16116 * 57.65597 * 17 16 15 19 19 H 1.09000 * 109.50078 * 62.28613 * 18 17 16 20 20 N 1.46905 * 109.49924 * 182.40409 * 18 17 16 21 21 C 1.46847 * 111.00332 * 189.56606 * 14 4 2 22 22 H 1.09007 * 109.47128 * 305.34657 * 1 2 3 23 23 H 1.08998 * 109.47303 * 65.34702 * 1 2 3 24 24 H 1.09005 * 109.47317 * 185.35240 * 1 2 3 25 25 H 1.09004 * 109.47239 * 240.01045 * 2 1 3 26 26 H 1.08995 * 109.47662 * 175.91297 * 3 2 1 27 27 H 1.09002 * 109.48003 * 295.91742 * 3 2 1 28 28 H 1.09004 * 109.47530 * 55.91392 * 3 2 1 29 29 H 0.97002 * 119.99939 * 180.02562 * 9 8 6 30 30 H 1.09000 * 109.46364 * 305.85860 * 15 14 4 31 31 H 1.08993 * 109.46252 * 65.82875 * 15 14 4 32 32 H 1.09002 * 109.49888 * 60.76353 * 16 15 14 33 33 H 1.09002 * 109.50187 * 180.87978 * 16 15 14 34 34 H 1.08997 * 109.52268 * 297.74311 * 17 16 15 35 35 H 1.09007 * 109.57199 * 177.59089 * 17 16 15 36 36 H 1.00900 * 110.99891 * 299.79920 * 20 18 17 37 37 H 1.00898 * 111.00129 * 63.75526 * 20 18 17 38 38 H 1.09000 * 109.46187 * 294.17678 * 21 14 4 39 39 H 1.08999 * 109.45984 * 54.15382 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 3.1300 -0.7142 1.2531 6 6 1.5285 -0.0175 2.4797 7 1 0.5472 -0.2500 2.8660 8 6 2.3134 0.9232 3.1121 9 7 3.5250 1.1753 2.6671 10 14 1.6558 1.8398 4.6011 11 1 1.9968 1.0880 5.8355 12 1 2.2672 3.1917 4.6599 13 1 0.1804 1.9681 4.4914 14 7 1.5594 -2.1094 1.2436 15 6 2.1410 -2.8632 0.1255 16 6 1.5098 -4.2560 0.0646 17 6 1.7673 -4.9861 1.3856 18 6 1.1943 -4.1566 2.5382 19 1 0.1154 -4.0612 2.4165 20 7 1.4879 -4.8221 3.8145 21 6 1.8348 -2.7668 2.5275 22 1 -0.3634 0.5946 0.8383 23 1 -0.3634 0.4286 -0.9340 24 1 -0.3634 -1.0232 0.0959 25 1 1.8933 -0.5137 -0.8901 26 1 3.1274 1.4435 0.0732 27 1 1.7376 1.9349 -0.9243 28 1 1.6181 1.9771 0.8511 29 1 4.0773 1.8369 3.1123 30 1 1.9472 -2.3353 -0.8082 31 1 3.2168 -2.9582 0.2723 32 1 0.4357 -4.1620 -0.0959 33 1 1.9528 -4.8208 -0.7558 34 1 2.8403 -5.1147 1.5276 35 1 1.2831 -5.9625 1.3637 36 1 1.0752 -5.7424 3.8457 37 1 2.4824 -4.8660 3.9791 38 1 2.9121 -2.8623 2.6629 39 1 1.4184 -2.1690 3.3383 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261161699.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:44 Heat of formation + Delta-G solvation = -32.003186 kcal Electronic energy + Delta-G solvation = -17165.222037 eV Core-core repulsion = 14719.983730 eV Total energy + Delta-G solvation = -2445.238307 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.21046 -37.47085 -34.61178 -33.85117 -32.69127 -29.00945 -28.30033 -27.57611 -25.68887 -23.28254 -23.08332 -20.72348 -20.18920 -18.07467 -17.14883 -16.88683 -16.16625 -15.58201 -15.46896 -15.04838 -14.67287 -14.48651 -14.41792 -13.92226 -13.60098 -13.30874 -13.01076 -12.84699 -12.66675 -12.48640 -12.10837 -12.02071 -11.88567 -11.80610 -11.73517 -11.51057 -11.22408 -10.92627 -10.55008 -10.44665 -9.50116 -8.81773 -8.04693 -6.10207 1.39893 1.42801 1.51213 2.45232 3.16279 3.35456 3.83392 3.98365 4.07511 4.23059 4.37633 4.45481 4.54741 4.62860 4.70039 4.73215 4.84915 4.94010 5.04895 5.06059 5.12589 5.20186 5.24079 5.32403 5.34156 5.43684 5.48083 5.59717 5.72589 5.78940 5.88817 5.91073 6.23985 6.32404 6.47279 6.69772 6.88768 7.07205 7.55071 9.01705 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024191 B = 0.010919 C = 0.008470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.153701 B = 2563.644946 C = 3304.879771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.074 4.074 3 C -0.107 4.107 4 C 0.212 3.788 5 H -0.016 1.016 6 C -0.490 4.490 7 H 0.048 0.952 8 C 0.024 3.976 9 N -0.917 5.917 10 Si 0.936 3.064 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.269 1.269 14 N -0.531 5.531 15 C 0.048 3.952 16 C -0.103 4.103 17 C -0.143 4.143 18 C 0.102 3.898 19 H 0.078 0.922 20 N -0.849 5.849 21 C 0.088 3.912 22 H 0.036 0.964 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.042 0.958 26 H 0.028 0.972 27 H 0.044 0.956 28 H 0.037 0.963 29 H 0.257 0.743 30 H 0.071 0.929 31 H 0.001 0.999 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.352 0.648 37 H 0.340 0.660 38 H -0.010 1.010 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 -10.011 -4.249 11.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.094 4.094 3 C -0.165 4.165 4 C 0.106 3.894 5 H 0.002 0.998 6 C -0.529 4.529 7 H 0.066 0.934 8 C -0.175 4.175 9 N -0.557 5.557 10 Si 0.763 3.237 11 H -0.208 1.208 12 H -0.212 1.212 13 H -0.193 1.193 14 N -0.256 5.256 15 C -0.080 4.080 16 C -0.141 4.141 17 C -0.182 4.182 18 C -0.010 4.010 19 H 0.096 0.904 20 N -0.379 5.379 21 C -0.041 4.041 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.020 0.980 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.166 0.834 37 H 0.152 0.848 38 H 0.008 0.992 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.474 -9.286 -3.924 11.029 hybrid contribution 1.652 0.225 0.551 1.756 sum -2.822 -9.060 -3.373 10.071 Atomic orbital electron populations 1.21442 0.94805 1.01167 0.99308 1.21062 0.96533 0.95399 0.96380 1.21420 0.99511 0.96651 0.98953 1.19276 0.92150 0.84052 0.93939 0.99802 1.21016 1.01052 1.20321 1.10506 0.93362 1.25468 0.94923 0.98017 0.99058 1.70064 1.09265 1.34477 1.41922 0.85885 0.78893 0.78105 0.80780 1.20847 1.21240 1.19341 1.61990 1.58862 1.02892 1.01837 1.22177 0.94854 0.95584 0.95404 1.21477 1.01578 0.93723 0.97346 1.22358 1.00467 0.99411 0.95981 1.21355 0.99823 0.92338 0.87513 0.90378 1.58729 1.18586 1.26400 1.34211 1.21647 0.95147 0.94328 0.92961 0.94524 0.93624 0.92645 0.94001 0.95249 0.93705 0.94380 0.93420 0.91053 0.98041 0.90952 0.90091 0.93160 0.89926 0.83370 0.84754 0.99180 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.35 8.76 71.98 0.63 -3.72 16 2 C -0.07 -3.26 2.54 -10.80 -0.03 -3.29 16 3 C -0.11 -4.87 8.04 71.98 0.58 -4.30 16 4 C 0.21 10.47 1.46 44.17 0.06 10.53 16 5 H -0.02 -0.92 7.25 -2.38 -0.02 -0.94 16 6 C -0.49 -26.20 4.76 25.60 0.12 -26.08 16 7 H 0.05 2.66 7.62 -2.91 -0.02 2.64 16 8 C 0.02 1.33 4.36 84.65 0.37 1.70 16 9 N -0.92 -52.62 11.75 21.45 0.25 -52.36 16 10 Si 0.94 44.22 29.54 68.60 2.03 46.25 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 14 N -0.53 -22.36 3.68 -875.51 -3.22 -25.58 16 15 C 0.05 1.71 5.29 86.33 0.46 2.17 16 16 C -0.10 -2.77 6.09 30.65 0.19 -2.58 16 17 C -0.14 -3.66 5.57 30.67 0.17 -3.49 16 18 C 0.10 3.18 3.41 44.97 0.15 3.33 16 19 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 20 N -0.85 -23.19 9.26 -168.46 -1.56 -24.75 16 21 C 0.09 3.68 4.70 86.32 0.41 4.08 16 22 H 0.04 1.57 7.40 -2.38 -0.02 1.55 16 23 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.05 2.14 7.46 -2.38 -0.02 2.13 16 25 H 0.04 1.72 6.39 -2.38 -0.02 1.70 16 26 H 0.03 1.43 7.80 -2.39 -0.02 1.41 16 27 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.04 1.88 6.72 -2.38 -0.02 1.86 16 29 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 30 H 0.07 2.49 6.19 -2.39 -0.01 2.47 16 31 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.35 7.39 9.04 -89.69 -0.81 6.57 16 37 H 0.34 8.96 8.98 -89.70 -0.81 8.16 16 38 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 39 H 0.06 2.91 6.47 -2.39 -0.02 2.90 16 Total: -1.00 -59.17 293.43 0.01 -59.16 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -0.60 Total: 18.92 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 3.11 Total: -21.63 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -4.53 Total: -102.69 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -59.17 0.01 -59.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161699.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.153 kcal (2) G-P(sol) polarization free energy of solvation -59.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds