Wall clock time and date at job start Mon Mar 30 2020 03:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46995 * 2 1 4 4 C 1.52994 * 109.47542 * 120.00016 * 2 1 3 5 5 H 1.09004 * 109.47261 * 300.43766 * 4 2 1 6 6 C 1.50695 * 109.47723 * 180.43181 * 4 2 1 7 7 H 1.08007 * 120.00005 * 275.55514 * 6 4 2 8 8 C 1.37871 * 120.00504 * 95.55140 * 6 4 2 9 9 N 1.31516 * 119.99526 * 10.06874 * 8 6 4 10 10 Si 1.86796 * 120.00368 * 190.07087 * 8 6 4 11 11 H 1.48500 * 109.47177 * 60.00020 * 10 8 6 12 12 H 1.48500 * 109.46968 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47205 * 299.99782 * 10 8 6 14 14 N 1.46906 * 109.47065 * 60.42992 * 4 2 1 15 15 C 1.46844 * 110.99739 * 64.62993 * 14 4 2 16 16 C 1.53039 * 109.51106 * 185.83473 * 15 14 4 17 17 C 1.53116 * 109.28007 * 300.82621 * 16 15 14 18 18 C 1.53123 * 109.16215 * 57.65770 * 17 16 15 19 19 H 1.08996 * 109.50042 * 62.28109 * 18 17 16 20 20 N 1.46897 * 109.50252 * 182.36609 * 18 17 16 21 21 C 1.46825 * 110.98552 * 188.84989 * 14 4 2 22 22 H 1.08994 * 109.47335 * 304.70770 * 1 2 3 23 23 H 1.09006 * 109.47373 * 64.71658 * 1 2 3 24 24 H 1.09003 * 109.46927 * 184.70914 * 1 2 3 25 25 H 1.09004 * 109.47387 * 240.00094 * 2 1 3 26 26 H 1.09005 * 109.46948 * 186.40798 * 3 2 1 27 27 H 1.09001 * 109.46838 * 306.40680 * 3 2 1 28 28 H 1.09001 * 109.46912 * 66.40678 * 3 2 1 29 29 H 0.97004 * 119.99801 * 180.02562 * 9 8 6 30 30 H 1.08994 * 109.46505 * 65.83192 * 15 14 4 31 31 H 1.08999 * 109.46270 * 305.84397 * 15 14 4 32 32 H 1.08997 * 109.50724 * 60.77144 * 16 15 14 33 33 H 1.09007 * 109.50312 * 180.88728 * 16 15 14 34 34 H 1.09000 * 109.52166 * 177.56082 * 17 16 15 35 35 H 1.08997 * 109.52589 * 297.75302 * 17 16 15 36 36 H 1.00898 * 110.99864 * 299.99210 * 20 18 17 37 37 H 1.00896 * 111.00056 * 63.95499 * 20 18 17 38 38 H 1.08993 * 109.47224 * 54.14055 * 21 14 4 39 39 H 1.09008 * 109.45265 * 294.15989 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6703 -0.2119 2.1392 6 6 3.5470 -0.7120 1.2546 7 1 4.0936 -1.4682 0.7107 8 6 4.2280 0.2619 1.9537 9 7 3.5777 1.0596 2.7725 10 14 6.0740 0.4483 1.7378 11 1 6.3783 0.7487 0.3157 12 1 6.5627 1.5594 2.5933 13 1 6.7486 -0.8144 2.1324 14 7 1.5589 -2.1092 1.2440 15 6 2.1266 -2.8587 0.1160 16 6 1.4941 -4.2511 0.0574 17 6 1.7674 -4.9862 1.3724 18 6 1.2089 -4.1611 2.5351 19 1 0.1286 -4.0647 2.4269 20 7 1.5169 -4.8319 3.8051 21 6 1.8496 -2.7713 2.5219 22 1 -0.3634 0.5851 0.8448 23 1 -0.3634 0.4389 -0.9293 24 1 -0.3633 -1.0242 0.0844 25 1 1.8933 -0.5138 -0.8900 26 1 3.1239 1.4447 -0.1147 27 1 1.5860 1.9884 -0.8271 28 1 1.7732 1.9222 0.9418 29 1 4.0568 1.7450 3.2641 30 1 3.2041 -2.9547 0.2492 31 1 1.9214 -2.3272 -0.8132 32 1 0.4183 -4.1562 -0.0897 33 1 1.9270 -4.8129 -0.7704 34 1 1.2819 -5.9619 1.3520 35 1 2.8420 -5.1157 1.5009 36 1 1.1066 -5.7532 3.8362 37 1 2.5131 -4.8744 3.9593 38 1 1.4435 -2.1764 3.3399 39 1 2.9286 -2.8676 2.6436 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261161700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:47 Heat of formation + Delta-G solvation = -15.486598 kcal Electronic energy + Delta-G solvation = -17172.596860 eV Core-core repulsion = 14728.074766 eV Total energy + Delta-G solvation = -2444.522094 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.65700 -35.80181 -32.95351 -32.09927 -31.16817 -27.61296 -26.57735 -25.70297 -23.77997 -21.83587 -21.50686 -19.26965 -18.39017 -16.31290 -15.59508 -15.38600 -14.43982 -14.10245 -13.48470 -13.44922 -13.21892 -13.01902 -12.80915 -12.31849 -11.93981 -11.67568 -11.22722 -11.02359 -10.95602 -10.85987 -10.63369 -10.47723 -10.35390 -10.16557 -9.94069 -9.72759 -9.39029 -9.19630 -9.03465 -8.40706 -8.32326 -7.01506 -5.99550 -4.06738 3.27374 3.33711 3.36539 4.41005 4.75095 5.13187 5.27686 5.30542 5.44194 5.66266 5.81984 6.00299 6.16288 6.17033 6.25941 6.28040 6.31325 6.42082 6.48829 6.62773 6.67937 6.75711 6.88159 6.95683 6.98612 7.02238 7.10252 7.38012 7.45508 7.48337 7.62647 7.72790 7.76310 7.90216 8.24105 8.33593 8.56555 9.06403 9.58105 11.02335 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022559 B = 0.010955 C = 0.008858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.880580 B = 2555.228758 C = 3160.129655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.076 4.076 3 C -0.120 4.120 4 C 0.204 3.796 5 H 0.071 0.929 6 C -0.543 4.543 7 H 0.053 0.947 8 C 0.080 3.920 9 N -0.881 5.881 10 Si 0.876 3.124 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.279 1.279 14 N -0.533 5.533 15 C 0.057 3.943 16 C -0.113 4.113 17 C -0.149 4.149 18 C 0.091 3.909 19 H 0.080 0.920 20 N -0.845 5.845 21 C 0.081 3.919 22 H 0.041 0.959 23 H 0.026 0.974 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.017 0.983 28 H 0.056 0.944 29 H 0.262 0.738 30 H 0.035 0.965 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.333 0.667 37 H 0.337 0.663 38 H 0.069 0.931 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.631 -7.750 -2.976 9.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.096 4.096 3 C -0.178 4.178 4 C 0.098 3.902 5 H 0.089 0.911 6 C -0.582 4.582 7 H 0.071 0.929 8 C -0.124 4.124 9 N -0.518 5.518 10 Si 0.704 3.296 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.205 1.205 14 N -0.257 5.257 15 C -0.072 4.072 16 C -0.151 4.151 17 C -0.188 4.188 18 C -0.021 4.021 19 H 0.098 0.902 20 N -0.372 5.372 21 C -0.048 4.048 22 H 0.061 0.939 23 H 0.045 0.955 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.087 0.913 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.535 -6.961 -2.533 8.685 hybrid contribution 2.630 -0.572 -0.660 2.772 sum -1.905 -7.533 -3.193 8.401 Atomic orbital electron populations 1.21788 0.97575 1.01158 0.98879 1.21157 0.92929 0.96120 0.99377 1.21548 1.01021 0.95796 0.99398 1.19519 0.92517 0.83117 0.95020 0.91069 1.21555 0.92536 1.12772 1.31369 0.92905 1.24862 0.97408 0.95993 0.94125 1.69911 1.35878 1.20297 1.25728 0.86919 0.86790 0.77660 0.78202 1.20265 1.21297 1.20522 1.62357 1.58280 1.04220 1.00853 1.21927 0.97002 0.92440 0.95786 1.21556 1.01126 0.96595 0.95868 1.22390 1.00548 0.98356 0.97540 1.21568 1.00298 0.94461 0.85744 0.90223 1.58857 1.17830 1.24784 1.35771 1.21640 0.98051 0.92010 0.93067 0.93943 0.95510 0.92408 0.93722 0.92692 0.96361 0.92529 0.92846 0.94685 0.91607 0.91921 0.92981 0.93278 0.92773 0.85542 0.85078 0.91256 0.94735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.11 37.16 0.34 -2.29 16 2 C -0.08 -1.66 2.27 -90.62 -0.21 -1.86 16 3 C -0.12 -2.66 8.29 37.16 0.31 -2.35 16 4 C 0.20 4.85 1.51 -68.87 -0.10 4.75 16 5 H 0.07 1.95 7.06 -51.93 -0.37 1.58 16 6 C -0.54 -14.05 6.26 -34.44 -0.22 -14.27 16 7 H 0.05 1.40 5.99 -52.48 -0.31 1.08 16 8 C 0.08 2.12 4.29 -17.82 -0.08 2.04 16 9 N -0.88 -24.27 12.39 55.43 0.69 -23.59 16 10 Si 0.88 20.88 29.55 -169.99 -5.02 15.85 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 N -0.53 -11.09 3.78 -228.10 -0.86 -11.95 16 15 C 0.06 1.09 4.76 -3.83 -0.02 1.07 16 16 C -0.11 -1.76 6.09 -26.65 -0.16 -1.92 16 17 C -0.15 -2.20 5.57 -26.61 -0.15 -2.34 16 18 C 0.09 1.48 3.41 -67.63 -0.23 1.25 16 19 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 20 N -0.84 -12.13 9.26 -4.60 -0.04 -12.17 16 21 C 0.08 1.65 4.72 -3.84 -0.02 1.64 16 22 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 23 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.06 1.09 7.47 -51.93 -0.39 0.71 16 25 H 0.04 0.97 6.37 -51.93 -0.33 0.64 16 26 H 0.05 1.31 6.88 -51.93 -0.36 0.96 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 1.34 7.98 -51.93 -0.41 0.93 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.03 0.74 6.30 -51.93 -0.33 0.41 16 31 H 0.07 1.27 6.16 -51.93 -0.32 0.95 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.33 3.93 9.04 -39.29 -0.36 3.58 16 37 H 0.34 4.70 8.98 -39.29 -0.35 4.35 16 38 H 0.07 1.55 8.03 -51.93 -0.42 1.13 16 39 H 0.03 0.78 7.56 -51.92 -0.39 0.38 16 LS Contribution 293.83 15.07 4.43 4.43 Total: -1.00 -26.33 293.83 -8.20 -34.53 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.85 Total: 7.19 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -0.53 Total: -14.29 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.22 Total: -47.71 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -26.33 -8.20 -34.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.043 kcal (2) G-P(sol) polarization free energy of solvation -26.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds