Wall clock time and date at job start Mon Mar 30 2020 03:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47086 * 2 1 4 4 C 1.53007 * 109.47078 * 119.99727 * 2 1 3 5 5 H 1.09002 * 109.46602 * 297.85970 * 4 2 1 6 6 C 1.50692 * 109.47061 * 57.85640 * 4 2 1 7 7 H 1.08001 * 120.00391 * 84.54688 * 6 4 2 8 8 C 1.37882 * 120.00159 * 264.54504 * 6 4 2 9 9 N 1.31518 * 119.99970 * 148.59039 * 8 6 4 10 10 Si 1.86795 * 119.99881 * 328.59533 * 8 6 4 11 11 H 1.48499 * 109.47602 * 55.19185 * 10 8 6 12 12 H 1.48497 * 109.47177 * 295.18647 * 10 8 6 13 13 H 1.48502 * 109.47109 * 175.18782 * 10 8 6 14 14 N 1.46897 * 109.47226 * 177.85745 * 4 2 1 15 15 C 1.46843 * 110.99870 * 298.84615 * 14 4 2 16 16 C 1.53038 * 109.52411 * 174.16364 * 15 14 4 17 17 C 1.53110 * 109.28099 * 59.17142 * 16 15 14 18 18 C 1.53120 * 109.16613 * 302.34812 * 17 16 15 19 19 H 1.08994 * 109.53495 * 297.69569 * 18 17 16 20 20 N 1.46893 * 109.50544 * 177.59258 * 18 17 16 21 21 C 1.46840 * 111.00182 * 174.63254 * 14 4 2 22 22 H 1.08994 * 109.47354 * 66.41001 * 1 2 3 23 23 H 1.08997 * 109.47429 * 186.41451 * 1 2 3 24 24 H 1.09007 * 109.47308 * 306.41154 * 1 2 3 25 25 H 1.08998 * 109.46862 * 239.99581 * 2 1 3 26 26 H 1.09005 * 109.46860 * 185.00504 * 3 2 1 27 27 H 1.09003 * 109.46937 * 304.99350 * 3 2 1 28 28 H 1.08995 * 109.47381 * 65.00400 * 3 2 1 29 29 H 0.96996 * 119.99746 * 180.02562 * 9 8 6 30 30 H 1.09007 * 109.46021 * 294.17305 * 15 14 4 31 31 H 1.08997 * 109.46885 * 54.14073 * 15 14 4 32 32 H 1.09006 * 109.49958 * 299.23095 * 16 15 14 33 33 H 1.08999 * 109.50498 * 179.12051 * 16 15 14 34 34 H 1.09003 * 109.52721 * 182.44266 * 17 16 15 35 35 H 1.09001 * 109.57524 * 62.28646 * 17 16 15 36 36 H 1.00895 * 111.00052 * 60.20028 * 20 18 17 37 37 H 1.00898 * 111.00016 * 184.15384 * 20 18 17 38 38 H 1.09005 * 109.46303 * 305.85480 * 21 14 4 39 39 H 1.09002 * 109.46238 * 65.82373 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7083 -0.1856 2.1388 6 6 1.4947 -2.1258 1.2762 7 1 1.9998 -2.9117 0.7342 8 6 0.3510 -2.4078 1.9929 9 7 -0.4645 -3.3549 1.5838 10 14 -0.0401 -1.4444 3.5447 11 1 -0.0562 0.0079 3.2350 12 1 0.9956 -1.7199 4.5726 13 1 -1.3707 -1.8552 4.0602 14 7 3.5080 -0.7662 1.2238 15 6 3.9915 -1.5056 0.0507 16 6 5.5170 -1.4084 -0.0221 17 6 6.1224 -1.9918 1.2575 18 6 5.5658 -1.2359 2.4671 19 1 5.8602 -0.1880 2.4091 20 7 6.0974 -1.8272 3.7022 21 6 4.0388 -1.3382 2.4677 22 1 -0.3634 0.4112 -0.9417 23 1 -0.3634 -1.0212 0.1148 24 1 -0.3634 0.6100 0.8271 25 1 1.8933 -0.5139 -0.8899 26 1 3.1263 1.4438 -0.0897 27 1 1.6054 1.9815 -0.8419 28 1 1.7517 1.9298 0.9314 29 1 -1.2693 -3.5530 2.0877 30 1 3.6979 -2.5520 0.1347 31 1 3.5567 -1.0780 -0.8527 32 1 5.8108 -0.3632 -0.1200 33 1 5.8768 -1.9702 -0.8840 34 1 7.2069 -1.8852 1.2289 35 1 5.8622 -3.0474 1.3363 36 1 7.1046 -1.7716 3.7253 37 1 5.6924 -1.3895 4.5161 38 1 3.6384 -0.7889 3.3198 39 1 3.7450 -2.3853 2.5403 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261161704.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:52 Heat of formation + Delta-G solvation = -9.751008 kcal Electronic energy + Delta-G solvation = -17222.452711 eV Core-core repulsion = 14778.179331 eV Total energy + Delta-G solvation = -2444.273380 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.73136 -35.87923 -33.03860 -32.23628 -31.35662 -27.73536 -27.07544 -25.88739 -23.65682 -21.94452 -21.48175 -19.12842 -18.32205 -16.81433 -15.47527 -15.28003 -14.70660 -14.37128 -14.06534 -13.39134 -13.24942 -12.97786 -12.71850 -12.26099 -12.00305 -11.89540 -11.55073 -11.28974 -11.07625 -10.96853 -10.75543 -10.46160 -10.32585 -10.07404 -9.99817 -9.73039 -9.55795 -9.36465 -9.19795 -8.41806 -8.27342 -7.00246 -6.23767 -4.04130 3.28658 3.35907 3.40687 4.41075 4.59816 5.02087 5.15893 5.31061 5.44352 5.62977 5.81480 5.95225 6.03467 6.08381 6.10091 6.23112 6.28419 6.38871 6.45652 6.52762 6.57666 6.61449 6.71186 6.81537 6.84012 6.86873 6.96789 7.05859 7.22048 7.37507 7.45002 7.54548 7.65757 7.70785 8.20163 8.29706 8.45983 8.96745 9.53571 10.88637 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.011562 C = 0.009481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.357371 B = 2421.096158 C = 2952.462821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.137 4.137 4 C 0.190 3.810 5 H 0.039 0.961 6 C -0.559 4.559 7 H 0.074 0.926 8 C 0.099 3.901 9 N -0.867 5.867 10 Si 0.845 3.155 11 H -0.267 1.267 12 H -0.273 1.273 13 H -0.291 1.291 14 N -0.533 5.533 15 C 0.058 3.942 16 C -0.115 4.115 17 C -0.108 4.108 18 C 0.093 3.907 19 H 0.034 0.966 20 N -0.848 5.848 21 C 0.073 3.927 22 H 0.030 0.970 23 H 0.085 0.915 24 H 0.033 0.967 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.031 0.969 28 H 0.039 0.961 29 H 0.264 0.736 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.334 0.666 37 H 0.339 0.661 38 H 0.053 0.947 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.264 5.897 -0.232 10.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 C -0.194 4.194 4 C 0.083 3.917 5 H 0.056 0.944 6 C -0.596 4.596 7 H 0.092 0.908 8 C -0.107 4.107 9 N -0.501 5.501 10 Si 0.671 3.329 11 H -0.192 1.192 12 H -0.198 1.198 13 H -0.217 1.217 14 N -0.257 5.257 15 C -0.071 4.071 16 C -0.154 4.154 17 C -0.146 4.146 18 C -0.018 4.018 19 H 0.052 0.948 20 N -0.378 5.378 21 C -0.056 4.056 22 H 0.049 0.951 23 H 0.104 0.896 24 H 0.052 0.948 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.072 0.928 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.917 5.588 -0.506 10.535 hybrid contribution -0.306 0.548 1.277 1.423 sum 8.611 6.135 0.771 10.601 Atomic orbital electron populations 1.21829 0.96139 1.03684 0.98356 1.21185 0.95077 0.93858 0.99735 1.21798 1.00881 0.97318 0.99408 1.19661 0.82885 0.95202 0.93965 0.94360 1.21324 1.10689 0.94507 1.33080 0.90829 1.24874 0.94630 0.94330 0.96892 1.70200 1.10267 1.32949 1.36670 0.87372 0.77466 0.81659 0.86355 1.19242 1.19821 1.21700 1.62336 1.11409 1.51101 1.00858 1.21944 0.92636 0.97842 0.94636 1.21600 0.96797 1.00515 0.96454 1.21535 0.98361 1.00422 0.94280 1.21388 0.96092 0.95162 0.89200 0.94818 1.58646 1.10419 1.64289 1.04402 1.21722 0.91179 0.99798 0.92921 0.95136 0.89617 0.94761 0.92316 0.92645 0.94954 0.94141 0.92660 0.93974 0.91363 0.92165 0.92400 0.93309 0.91549 0.85404 0.84909 0.92839 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.85 37.16 0.33 -2.74 16 2 C -0.08 -1.66 2.24 -90.62 -0.20 -1.87 16 3 C -0.14 -2.48 8.99 37.16 0.33 -2.15 16 4 C 0.19 4.35 1.39 -68.87 -0.10 4.25 16 5 H 0.04 0.94 5.32 -51.93 -0.28 0.66 16 6 C -0.56 -14.74 6.42 -34.44 -0.22 -14.96 16 7 H 0.07 2.14 6.35 -52.49 -0.33 1.81 16 8 C 0.10 2.69 3.90 -17.82 -0.07 2.62 16 9 N -0.87 -25.07 13.96 55.43 0.77 -24.29 16 10 Si 0.85 20.84 27.37 -169.99 -4.65 16.19 16 11 H -0.27 -6.44 6.81 56.52 0.39 -6.05 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 14 N -0.53 -10.84 4.06 -228.08 -0.93 -11.76 16 15 C 0.06 1.10 4.79 -3.84 -0.02 1.08 16 16 C -0.12 -1.78 6.09 -26.65 -0.16 -1.95 16 17 C -0.11 -1.65 5.58 -26.61 -0.15 -1.80 16 18 C 0.09 1.49 3.41 -67.63 -0.23 1.26 16 19 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 20 N -0.85 -11.93 9.25 -4.60 -0.04 -11.97 16 21 C 0.07 1.45 4.67 -3.84 -0.02 1.43 16 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.08 2.11 5.97 -51.93 -0.31 1.80 16 24 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 25 H 0.06 1.25 6.20 -51.93 -0.32 0.93 16 26 H 0.05 0.98 7.82 -51.93 -0.41 0.57 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.04 0.91 6.39 -51.93 -0.33 0.58 16 31 H 0.07 1.29 6.00 -51.93 -0.31 0.98 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.33 3.85 9.04 -39.29 -0.36 3.50 16 37 H 0.34 4.43 8.99 -39.29 -0.35 4.08 16 38 H 0.05 1.09 8.07 -51.93 -0.42 0.67 16 39 H 0.05 1.21 7.45 -51.93 -0.39 0.83 16 LS Contribution 291.19 15.07 4.39 4.39 Total: -1.00 -27.61 291.19 -7.72 -35.34 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.76 Total: 6.92 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -0.50 Total: -14.81 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.20 Total: -48.03 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.65 Total: 16.19 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.61 -7.72 -35.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161704.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.586 kcal (2) G-P(sol) polarization free energy of solvation -27.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds