Wall clock time and date at job start Mon Mar 30 2020 03:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47086 * 2 1 4 4 C 1.53007 * 109.47078 * 119.99727 * 2 1 3 5 5 H 1.09002 * 109.46602 * 297.85970 * 4 2 1 6 6 C 1.50692 * 109.47061 * 57.85640 * 4 2 1 7 7 H 1.08001 * 120.00391 * 84.54688 * 6 4 2 8 8 C 1.37882 * 120.00159 * 264.54504 * 6 4 2 9 9 N 1.31518 * 119.99970 * 148.59039 * 8 6 4 10 10 Si 1.86795 * 119.99881 * 328.59533 * 8 6 4 11 11 H 1.48499 * 109.47602 * 55.19185 * 10 8 6 12 12 H 1.48497 * 109.47177 * 295.18647 * 10 8 6 13 13 H 1.48502 * 109.47109 * 175.18782 * 10 8 6 14 14 N 1.46897 * 109.47226 * 177.85745 * 4 2 1 15 15 C 1.46843 * 110.99870 * 298.84615 * 14 4 2 16 16 C 1.53038 * 109.52411 * 174.16364 * 15 14 4 17 17 C 1.53110 * 109.28099 * 59.17142 * 16 15 14 18 18 C 1.53120 * 109.16613 * 302.34812 * 17 16 15 19 19 H 1.08994 * 109.53495 * 297.69569 * 18 17 16 20 20 N 1.46893 * 109.50544 * 177.59258 * 18 17 16 21 21 C 1.46840 * 111.00182 * 174.63254 * 14 4 2 22 22 H 1.08994 * 109.47354 * 66.41001 * 1 2 3 23 23 H 1.08997 * 109.47429 * 186.41451 * 1 2 3 24 24 H 1.09007 * 109.47308 * 306.41154 * 1 2 3 25 25 H 1.08998 * 109.46862 * 239.99581 * 2 1 3 26 26 H 1.09005 * 109.46860 * 185.00504 * 3 2 1 27 27 H 1.09003 * 109.46937 * 304.99350 * 3 2 1 28 28 H 1.08995 * 109.47381 * 65.00400 * 3 2 1 29 29 H 0.96996 * 119.99746 * 180.02562 * 9 8 6 30 30 H 1.09007 * 109.46021 * 294.17305 * 15 14 4 31 31 H 1.08997 * 109.46885 * 54.14073 * 15 14 4 32 32 H 1.09006 * 109.49958 * 299.23095 * 16 15 14 33 33 H 1.08999 * 109.50498 * 179.12051 * 16 15 14 34 34 H 1.09003 * 109.52721 * 182.44266 * 17 16 15 35 35 H 1.09001 * 109.57524 * 62.28646 * 17 16 15 36 36 H 1.00895 * 111.00052 * 60.20028 * 20 18 17 37 37 H 1.00898 * 111.00016 * 184.15384 * 20 18 17 38 38 H 1.09005 * 109.46303 * 305.85480 * 21 14 4 39 39 H 1.09002 * 109.46238 * 65.82373 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7083 -0.1856 2.1388 6 6 1.4947 -2.1258 1.2762 7 1 1.9998 -2.9117 0.7342 8 6 0.3510 -2.4078 1.9929 9 7 -0.4645 -3.3549 1.5838 10 14 -0.0401 -1.4444 3.5447 11 1 -0.0562 0.0079 3.2350 12 1 0.9956 -1.7199 4.5726 13 1 -1.3707 -1.8552 4.0602 14 7 3.5080 -0.7662 1.2238 15 6 3.9915 -1.5056 0.0507 16 6 5.5170 -1.4084 -0.0221 17 6 6.1224 -1.9918 1.2575 18 6 5.5658 -1.2359 2.4671 19 1 5.8602 -0.1880 2.4091 20 7 6.0974 -1.8272 3.7022 21 6 4.0388 -1.3382 2.4677 22 1 -0.3634 0.4112 -0.9417 23 1 -0.3634 -1.0212 0.1148 24 1 -0.3634 0.6100 0.8271 25 1 1.8933 -0.5139 -0.8899 26 1 3.1263 1.4438 -0.0897 27 1 1.6054 1.9815 -0.8419 28 1 1.7517 1.9298 0.9314 29 1 -1.2693 -3.5530 2.0877 30 1 3.6979 -2.5520 0.1347 31 1 3.5567 -1.0780 -0.8527 32 1 5.8108 -0.3632 -0.1200 33 1 5.8768 -1.9702 -0.8840 34 1 7.2069 -1.8852 1.2289 35 1 5.8622 -3.0474 1.3363 36 1 7.1046 -1.7716 3.7253 37 1 5.6924 -1.3895 4.5161 38 1 3.6384 -0.7889 3.3198 39 1 3.7450 -2.3853 2.5403 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261161704.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:52 Heat of formation + Delta-G solvation = -29.576466 kcal Electronic energy + Delta-G solvation = -17223.312408 eV Core-core repulsion = 14778.179331 eV Total energy + Delta-G solvation = -2445.133076 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.30218 -37.43981 -34.52395 -34.22519 -32.83148 -29.21330 -28.84240 -27.53052 -25.40349 -23.37690 -23.11880 -20.58906 -20.10571 -18.80762 -17.05055 -16.56723 -16.33428 -16.01010 -15.56211 -15.04484 -14.94765 -14.60244 -14.40170 -14.01624 -13.51827 -13.37833 -13.17661 -12.95856 -12.71778 -12.63741 -12.47443 -12.15243 -11.91286 -11.66646 -11.61129 -11.54922 -11.28314 -10.97036 -10.89551 -10.35593 -9.55334 -8.80425 -8.38427 -6.19184 1.28182 1.34014 1.38377 2.32916 2.92815 3.22947 3.78066 3.96245 4.11499 4.24771 4.32331 4.44346 4.50881 4.61674 4.63787 4.69984 4.90861 4.94539 4.98431 5.03231 5.10166 5.11205 5.14060 5.19417 5.25414 5.31946 5.41318 5.49439 5.55442 5.62894 5.69880 5.86950 6.22314 6.32073 6.44668 6.61830 6.69701 6.82723 7.39877 8.78100 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.011562 C = 0.009481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.357371 B = 2421.096158 C = 2952.462821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 C -0.125 4.125 4 C 0.192 3.808 5 H 0.028 0.972 6 C -0.550 4.550 7 H 0.033 0.967 8 C 0.056 3.944 9 N -0.911 5.911 10 Si 0.896 3.104 11 H -0.253 1.253 12 H -0.271 1.271 13 H -0.290 1.290 14 N -0.522 5.522 15 C 0.059 3.941 16 C -0.106 4.106 17 C -0.106 4.106 18 C 0.103 3.897 19 H 0.048 0.952 20 N -0.854 5.854 21 C 0.074 3.926 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.035 0.965 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.039 0.961 29 H 0.264 0.736 30 H 0.004 0.996 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.353 0.647 37 H 0.345 0.655 38 H 0.046 0.954 39 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.103 8.241 -0.177 13.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.099 4.099 3 C -0.183 4.183 4 C 0.084 3.916 5 H 0.046 0.954 6 C -0.588 4.588 7 H 0.051 0.949 8 C -0.146 4.146 9 N -0.548 5.548 10 Si 0.721 3.279 11 H -0.177 1.177 12 H -0.197 1.197 13 H -0.216 1.216 14 N -0.245 5.245 15 C -0.069 4.069 16 C -0.144 4.144 17 C -0.144 4.144 18 C -0.008 4.008 19 H 0.066 0.934 20 N -0.387 5.387 21 C -0.055 4.055 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.022 0.978 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.167 0.833 37 H 0.158 0.842 38 H 0.065 0.935 39 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 10.787 7.947 -0.443 13.405 hybrid contribution -0.854 -0.255 1.210 1.503 sum 9.932 7.691 0.767 12.586 Atomic orbital electron populations 1.21756 0.96515 1.01472 0.99872 1.21136 0.94772 0.95857 0.98142 1.21669 1.01350 0.94819 1.00431 1.19607 0.84570 0.92831 0.94574 0.95411 1.21455 1.10041 0.95543 1.31748 0.94872 1.25450 0.94719 0.95394 0.99065 1.70287 1.11134 1.35361 1.37984 0.86543 0.77155 0.81211 0.82982 1.17701 1.19684 1.21581 1.62377 1.09627 1.50918 1.01587 1.21976 0.95697 0.95243 0.93978 1.21555 0.93390 1.01998 0.97491 1.21528 1.00281 0.98860 0.93703 1.21217 0.92926 0.96205 0.90500 0.93415 1.58557 1.11882 1.64328 1.03897 1.21740 0.94417 0.96896 0.92464 0.92481 0.93420 0.94585 0.92962 0.91905 0.92608 0.94159 0.92683 0.97819 0.91345 0.90395 0.90409 0.90010 0.93765 0.83308 0.84210 0.93516 0.97075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.84 8.85 71.98 0.64 -5.21 16 2 C -0.08 -3.27 2.24 -10.79 -0.02 -3.29 16 3 C -0.13 -4.17 8.99 71.98 0.65 -3.53 16 4 C 0.19 8.82 1.39 44.17 0.06 8.88 16 5 H 0.03 1.35 5.32 -2.39 -0.01 1.33 16 6 C -0.55 -30.21 6.42 25.60 0.16 -30.05 16 7 H 0.03 2.06 6.35 -2.91 -0.02 2.05 16 8 C 0.06 3.15 3.90 84.66 0.33 3.48 16 9 N -0.91 -54.89 13.96 21.45 0.30 -54.59 16 10 Si 0.90 43.58 27.37 68.60 1.88 45.46 16 11 H -0.25 -11.63 6.81 99.48 0.68 -10.95 16 12 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 13 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 14 N -0.52 -20.96 4.06 -875.52 -3.56 -24.52 16 15 C 0.06 2.25 4.79 86.33 0.41 2.66 16 16 C -0.11 -3.02 6.09 30.64 0.19 -2.83 16 17 C -0.11 -2.98 5.58 30.67 0.17 -2.81 16 18 C 0.10 3.09 3.41 44.97 0.15 3.24 16 19 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 20 N -0.85 -22.25 9.25 -168.47 -1.56 -23.81 16 21 C 0.07 2.94 4.67 86.33 0.40 3.34 16 22 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 23 H 0.05 2.38 5.97 -2.39 -0.01 2.36 16 24 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.05 2.20 6.20 -2.39 -0.01 2.18 16 26 H 0.06 2.00 7.82 -2.38 -0.02 1.98 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 28 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.00 0.16 6.39 -2.38 -0.02 0.15 16 31 H 0.07 2.56 6.00 -2.39 -0.01 2.55 16 32 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.35 7.04 9.04 -89.70 -0.81 6.23 16 37 H 0.34 8.35 8.99 -89.70 -0.81 7.54 16 38 H 0.05 1.88 8.07 -2.38 -0.02 1.86 16 39 H 0.01 0.52 7.45 -2.39 -0.02 0.50 16 Total: -1.00 -61.81 291.19 -0.41 -62.22 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -0.62 Total: 21.34 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 3.14 Total: -26.11 kcal Atomic # 7 Polarization: -98.10 SS G_CDS: -4.82 Total: -102.92 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.46 kcal Total: -61.81 -0.41 -62.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161704.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.647 kcal (2) G-P(sol) polarization free energy of solvation -61.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds