Wall clock time and date at job start Mon Mar 30 2020 03:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 110.99726 * 2 1 4 4 C 1.50693 * 109.47114 * 287.54759 * 3 2 1 5 5 H 1.07997 * 120.00260 * 0.27602 * 4 3 2 6 6 C 1.37879 * 119.99996 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00150 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00074 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47135 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47030 * 120.00318 * 8 6 4 11 11 H 1.48501 * 109.47281 * 240.00182 * 8 6 4 12 12 C 1.46897 * 110.99752 * 123.95077 * 2 1 3 13 13 H 1.08997 * 109.52784 * 270.92089 * 12 2 1 14 14 C 1.53118 * 109.52502 * 31.11221 * 12 2 1 15 15 C 1.53041 * 109.28061 * 177.55759 * 14 12 2 16 16 N 1.46845 * 109.52274 * 300.81908 * 15 14 12 17 17 C 1.46850 * 111.19835 * 61.74211 * 16 15 14 18 18 C 1.53040 * 109.52228 * 298.25690 * 17 16 15 19 19 C 1.52997 * 109.50440 * 299.23729 * 18 17 16 20 20 C 1.53001 * 109.50252 * 179.11547 * 18 17 16 21 21 H 1.09000 * 109.46919 * 53.54154 * 1 2 3 22 22 H 1.09002 * 109.46789 * 173.53986 * 1 2 3 23 23 H 1.08996 * 109.47442 * 293.53924 * 1 2 3 24 24 H 1.08999 * 109.46955 * 167.54484 * 3 2 1 25 25 H 1.09005 * 109.47216 * 47.55242 * 3 2 1 26 26 H 0.96996 * 119.99729 * 180.02562 * 7 6 4 27 27 H 1.09005 * 109.50425 * 297.49934 * 14 12 2 28 28 H 1.08998 * 109.50337 * 57.61393 * 14 12 2 29 29 H 1.09002 * 109.45995 * 180.80199 * 15 14 12 30 30 H 1.08997 * 109.45181 * 60.83256 * 15 14 12 31 31 H 1.00900 * 110.99701 * 185.84172 * 16 15 14 32 32 H 1.08999 * 109.46252 * 178.23881 * 17 16 15 33 33 H 1.09004 * 109.46015 * 58.26978 * 17 16 15 34 34 H 1.09001 * 109.46991 * 173.83913 * 19 18 17 35 35 H 1.09002 * 109.47425 * 293.84085 * 19 18 17 36 36 H 1.09003 * 109.47263 * 53.84436 * 19 18 17 37 37 H 1.08992 * 109.47533 * 290.99789 * 20 18 17 38 38 H 1.09000 * 109.46760 * 51.00168 * 20 18 17 39 39 H 1.08998 * 109.46629 * 170.99199 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7755 1.9939 -1.3546 5 1 1.2890 1.4290 -2.1360 6 6 2.1908 3.2865 -1.5950 7 7 2.7793 3.9761 -0.6422 8 14 1.9188 4.0579 -3.2745 9 1 1.2416 3.0807 -4.1642 10 1 1.0699 5.2679 -3.1318 11 1 3.2284 4.4385 -3.8623 12 6 1.9954 -0.7659 1.1376 13 1 2.1106 -0.1071 1.9983 14 6 1.0253 -1.8986 1.4847 15 6 1.6078 -2.7295 2.6303 16 7 2.9072 -3.2808 2.2252 17 6 3.8698 -2.2112 1.9325 18 6 3.3549 -1.3648 0.7661 19 6 3.2030 -2.2452 -0.4759 20 6 4.3475 -0.2373 0.4759 21 1 -0.3633 0.6107 -0.8265 22 1 -0.3633 -1.0212 -0.1156 23 1 -0.3634 0.4104 0.9421 24 1 3.0625 1.3511 0.2216 25 1 1.4781 1.9592 0.7583 26 1 3.0711 4.8855 -0.8113 27 1 0.0681 -1.4767 1.7913 28 1 0.8804 -2.5341 0.6112 29 1 0.9260 -3.5454 2.8703 30 1 1.7395 -2.0963 3.5076 31 1 3.2677 -3.9098 2.9271 32 1 4.8310 -2.6507 1.6658 33 1 3.9909 -1.5805 2.8133 34 1 2.7342 -1.6696 -1.2741 35 1 4.1857 -2.5857 -0.8024 36 1 2.5808 -3.1074 -0.2363 37 1 4.3345 0.4788 1.2975 38 1 5.3497 -0.6533 0.3723 39 1 4.0656 0.2657 -0.4491 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300778121.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:16 Heat of formation + Delta-G solvation = 7.199786 kcal Electronic energy + Delta-G solvation = -17166.812425 eV Core-core repulsion = 14723.274087 eV Total energy + Delta-G solvation = -2443.538338 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.57692 -35.69485 -33.29814 -32.59048 -30.28564 -27.50090 -26.48972 -25.78924 -25.10010 -22.58706 -21.17828 -20.20427 -17.83602 -16.28166 -16.11408 -15.06547 -14.72348 -14.40546 -14.11504 -13.75989 -13.46384 -12.83007 -12.57790 -12.37081 -11.98146 -11.70977 -11.55882 -11.26758 -11.11097 -10.94836 -10.91473 -10.75656 -10.51580 -10.25745 -10.03239 -9.89481 -9.78624 -9.45958 -8.96144 -8.33490 -8.26321 -7.09266 -5.97499 -3.97393 3.33270 3.40875 3.46012 4.36571 4.46370 4.93444 5.13206 5.14631 5.37711 5.43800 5.52897 5.61815 5.81723 5.88467 5.95843 6.02076 6.05462 6.16935 6.20764 6.27746 6.37025 6.42658 6.55907 6.72086 6.77051 6.81574 6.86513 7.05259 7.15048 7.24424 7.38868 7.46852 7.53705 7.89348 8.21213 8.31030 8.64653 9.11281 9.66124 11.13065 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.041047 B = 0.007732 C = 0.007252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.988496 B = 3620.382049 C = 3860.113566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.529 5.529 3 C 0.172 3.828 4 C -0.499 4.499 5 H 0.062 0.938 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 C 0.094 3.906 13 H 0.028 0.972 14 C -0.119 4.119 15 C 0.060 3.940 16 N -0.686 5.686 17 C 0.067 3.933 18 C -0.044 4.044 19 C -0.121 4.121 20 C -0.144 4.144 21 H 0.069 0.931 22 H 0.049 0.951 23 H 0.006 0.994 24 H 0.055 0.945 25 H -0.016 1.016 26 H 0.259 0.741 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.024 0.976 31 H 0.335 0.665 32 H 0.071 0.929 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.033 0.967 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.038 0.962 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.139 -12.017 5.593 13.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.252 5.252 3 C 0.047 3.953 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.211 1.211 12 C -0.016 4.016 13 H 0.046 0.954 14 C -0.157 4.157 15 C -0.069 4.069 16 N -0.316 5.316 17 C -0.062 4.062 18 C -0.045 4.045 19 C -0.179 4.179 20 C -0.202 4.202 21 H 0.088 0.912 22 H 0.068 0.932 23 H 0.025 0.975 24 H 0.073 0.927 25 H 0.002 0.998 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.152 0.848 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.098 -12.135 4.531 12.953 hybrid contribution -0.162 1.409 0.944 1.704 sum -0.260 -10.726 5.474 12.045 Atomic orbital electron populations 1.22283 0.89556 0.99798 0.99688 1.62135 1.06171 1.17523 1.39412 1.20231 0.96949 0.81534 0.96550 1.21218 1.37601 0.97431 0.97571 0.91971 1.24977 0.95619 0.97221 0.96921 1.69970 1.41038 1.10646 1.32408 0.86499 0.77781 0.79089 0.84393 1.19709 1.21277 1.21098 1.21606 0.94016 0.93562 0.92390 0.95368 1.21920 0.98012 0.97236 0.98571 1.21919 0.91211 0.97526 0.96293 1.60265 1.03797 1.19361 1.48186 1.22054 0.94806 0.92148 0.97227 1.20437 0.94577 0.94630 0.94862 1.21640 1.00083 0.98962 0.97174 1.22104 0.96878 0.97456 1.03729 0.91204 0.93201 0.97535 0.92741 0.99826 0.93144 0.91885 0.90227 0.91271 0.95797 0.84830 0.91100 0.95798 0.91064 0.94738 0.92514 0.93435 0.94250 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 8.16 60.07 0.49 1.18 16 2 N -0.53 -11.30 3.53 -236.18 -0.83 -12.14 16 3 C 0.17 4.44 3.88 -4.98 -0.02 4.42 16 4 C -0.50 -13.98 8.52 -34.44 -0.29 -14.27 16 5 H 0.06 1.74 7.56 -52.49 -0.40 1.35 16 6 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 7 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 8 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 C 0.09 1.72 1.61 -67.59 -0.11 1.61 16 13 H 0.03 0.57 7.86 -51.93 -0.41 0.16 16 14 C -0.12 -1.82 3.76 -26.65 -0.10 -1.92 16 15 C 0.06 0.78 6.55 -3.83 -0.03 0.75 16 16 N -0.69 -8.73 6.03 -113.81 -0.69 -9.41 16 17 C 0.07 0.95 5.26 -3.83 -0.02 0.93 16 18 C -0.04 -0.75 0.59 -154.42 -0.09 -0.84 16 19 C -0.12 -2.04 7.85 37.16 0.29 -1.75 16 20 C -0.14 -2.68 6.85 37.16 0.25 -2.43 16 21 H 0.07 1.47 7.19 -51.93 -0.37 1.10 16 22 H 0.05 0.84 6.47 -51.93 -0.34 0.51 16 23 H 0.01 0.12 7.82 -51.93 -0.41 -0.29 16 24 H 0.05 1.44 3.99 -51.93 -0.21 1.24 16 25 H -0.02 -0.46 8.05 -51.93 -0.42 -0.88 16 26 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 27 H 0.06 0.94 6.61 -51.93 -0.34 0.59 16 28 H 0.08 1.26 6.37 -51.93 -0.33 0.93 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.33 3.45 8.90 -39.29 -0.35 3.10 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 1.36 7.36 -51.93 -0.38 0.98 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.92 6.16 -51.93 -0.32 0.60 16 37 H 0.05 0.92 7.54 -51.93 -0.39 0.53 16 38 H 0.04 0.64 8.12 -51.93 -0.42 0.21 16 39 H 0.09 1.98 6.22 -51.93 -0.32 1.66 16 LS Contribution 287.42 15.07 4.33 4.33 Total: -1.00 -29.15 287.42 -7.85 -37.00 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.66 Total: 0.37 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 0.28 Total: -10.89 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.78 Total: -47.57 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.15 -7.85 -37.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300778121.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.198 kcal (2) G-P(sol) polarization free energy of solvation -29.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds