Wall clock time and date at job start Mon Mar 30 2020 03:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 110.99989 * 2 1 4 4 C 1.50697 * 109.47088 * 72.68815 * 3 2 1 5 5 H 1.07997 * 120.00425 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99779 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99854 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00156 * 0.02562 * 6 4 3 9 9 H 1.48502 * 109.46975 * 89.99867 * 8 6 4 10 10 H 1.48499 * 109.47080 * 210.00022 * 8 6 4 11 11 H 1.48500 * 109.46849 * 329.99922 * 8 6 4 12 12 C 1.46898 * 111.00198 * 236.04217 * 2 1 3 13 13 H 1.09001 * 109.51862 * 88.73870 * 12 2 1 14 14 C 1.53124 * 109.52475 * 328.61828 * 12 2 1 15 15 C 1.53032 * 109.31221 * 182.35160 * 14 12 2 16 16 N 1.46932 * 109.47646 * 59.16171 * 15 14 12 17 17 C 1.46852 * 111.21767 * 298.28107 * 16 15 14 18 18 C 1.53036 * 109.52429 * 61.74448 * 17 16 15 19 19 C 1.52996 * 109.50459 * 180.87854 * 18 17 16 20 20 C 1.53005 * 109.50302 * 60.76077 * 18 17 16 21 21 H 1.09007 * 109.47156 * 190.13301 * 1 2 3 22 22 H 1.09003 * 109.47375 * 310.13434 * 1 2 3 23 23 H 1.09001 * 109.47105 * 70.13703 * 1 2 3 24 24 H 1.08993 * 109.47143 * 192.69331 * 3 2 1 25 25 H 1.09003 * 109.47252 * 312.69217 * 3 2 1 26 26 H 0.97001 * 120.00027 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.50123 * 302.32001 * 14 12 2 28 28 H 1.09005 * 109.50179 * 62.39210 * 14 12 2 29 29 H 1.08999 * 109.46383 * 179.21292 * 15 14 12 30 30 H 1.08996 * 109.46676 * 299.18576 * 15 14 12 31 31 H 1.00903 * 110.99292 * 62.38187 * 16 15 14 32 32 H 1.09001 * 109.46550 * 301.72633 * 17 16 15 33 33 H 1.09002 * 109.46055 * 181.76206 * 17 16 15 34 34 H 1.09005 * 109.47404 * 191.26957 * 19 18 17 35 35 H 1.09000 * 109.46988 * 311.26734 * 19 18 17 36 36 H 1.08997 * 109.47149 * 71.26356 * 19 18 17 37 37 H 1.09000 * 109.46734 * 304.00541 * 20 18 17 38 38 H 1.09004 * 109.47058 * 64.00156 * 20 18 17 39 39 H 1.08996 * 109.46784 * 184.00267 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7807 1.9919 1.3564 5 1 1.3016 1.4241 2.1403 6 6 2.1961 3.2845 1.5968 7 7 2.0092 3.8258 2.7807 8 14 3.0243 4.2668 0.2408 9 1 1.9953 5.0055 -0.5343 10 1 3.9793 5.2323 0.8417 11 1 3.7565 3.3434 -0.6627 12 6 1.9955 -0.7660 -1.1375 13 1 2.1049 -0.1085 -2.0000 14 6 1.0287 -1.9029 -1.4803 15 6 1.6097 -2.7329 -2.6271 16 7 2.9136 -3.2785 -2.2254 17 6 3.8729 -2.2047 -1.9370 18 6 3.3584 -1.3590 -0.7699 19 6 4.3475 -0.2273 -0.4840 20 6 3.2141 -2.2387 0.4737 21 1 -0.3634 -1.0117 0.1808 22 1 -0.3634 0.6624 0.7857 23 1 -0.3633 0.3492 -0.9665 24 1 3.0615 1.3513 -0.2258 25 1 1.4751 1.9604 -0.7554 26 1 2.3017 4.7351 2.9499 27 1 0.8892 -2.5381 -0.6055 28 1 0.0686 -1.4852 -1.7835 29 1 0.9299 -3.5514 -2.8638 30 1 1.7361 -2.1003 -3.5057 31 1 2.8179 -3.8995 -1.4359 32 1 3.9887 -1.5745 -2.8188 33 1 4.8367 -2.6400 -1.6730 34 1 4.0904 0.2498 0.4617 35 1 5.3570 -0.6339 -0.4232 36 1 4.2999 0.5083 -1.2869 37 1 2.5635 -3.0834 0.2475 38 1 4.1952 -2.6061 0.7746 39 1 2.7809 -1.6531 1.2845 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300778122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:18 Heat of formation + Delta-G solvation = 8.848221 kcal Electronic energy + Delta-G solvation = -17264.956905 eV Core-core repulsion = 14821.490048 eV Total energy + Delta-G solvation = -2443.466857 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.95116 -35.90051 -33.39157 -32.54740 -30.31211 -28.03764 -26.88563 -25.97036 -25.15535 -22.51354 -21.33620 -20.20662 -18.35254 -16.77372 -15.86247 -15.36269 -14.73157 -14.64994 -14.27783 -13.84478 -13.08256 -13.01832 -12.78345 -12.54749 -12.24012 -12.03137 -11.81402 -11.59253 -11.24893 -11.21232 -11.00680 -10.99009 -10.64559 -10.44702 -10.25566 -10.10285 -9.76771 -9.72613 -9.17762 -8.55466 -8.20188 -7.30771 -6.04756 -4.00557 3.26611 3.34746 3.35972 4.39272 4.41581 4.69196 4.96266 5.05666 5.22788 5.27630 5.41246 5.48420 5.54576 5.66973 5.84009 5.91557 5.95557 5.98180 6.04819 6.06206 6.15905 6.21755 6.30494 6.39272 6.50753 6.58595 6.68319 6.81328 6.89565 6.94951 7.02126 7.11407 7.44675 7.66595 7.94985 8.08659 8.68609 9.05409 9.57856 11.08666 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.036253 B = 0.008649 C = 0.008082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.173379 B = 3236.718523 C = 3463.662100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.520 5.520 3 C 0.143 3.857 4 C -0.503 4.503 5 H 0.079 0.921 6 C 0.067 3.933 7 N -0.902 5.902 8 Si 0.871 3.129 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.093 3.907 13 H 0.033 0.967 14 C -0.159 4.159 15 C 0.058 3.942 16 N -0.687 5.687 17 C 0.066 3.934 18 C -0.084 4.084 19 C -0.144 4.144 20 C -0.132 4.132 21 H 0.051 0.949 22 H 0.075 0.925 23 H 0.008 0.992 24 H 0.050 0.950 25 H -0.022 1.022 26 H 0.263 0.737 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.340 0.660 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.294 -11.751 -9.292 15.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.243 5.243 3 C 0.017 3.983 4 C -0.541 4.541 5 H 0.097 0.903 6 C -0.134 4.134 7 N -0.541 5.541 8 Si 0.699 3.301 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.192 1.192 12 C -0.016 4.016 13 H 0.051 0.949 14 C -0.199 4.199 15 C -0.072 4.072 16 N -0.316 5.316 17 C -0.064 4.064 18 C -0.087 4.087 19 C -0.201 4.201 20 C -0.189 4.189 21 H 0.069 0.931 22 H 0.094 0.906 23 H 0.026 0.974 24 H 0.068 0.932 25 H -0.005 1.005 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.158 0.842 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.701 -11.905 -9.418 15.275 hybrid contribution -0.264 1.589 -0.540 1.699 sum 1.437 -10.316 -9.958 14.410 Atomic orbital electron populations 1.22305 0.88888 1.00547 0.99652 1.61984 1.06626 1.16187 1.39520 1.20665 0.96469 0.83948 0.97236 1.21034 1.38792 0.97866 0.96425 0.90292 1.24889 0.95797 0.97472 0.95220 1.69894 1.47925 1.14912 1.21386 0.86922 0.79962 0.80464 0.82761 1.20497 1.21174 1.19169 1.21621 0.93773 0.93843 0.92354 0.94945 1.22576 0.99332 0.98433 0.99528 1.22025 0.90179 0.97769 0.97250 1.60762 1.09651 1.18979 1.42190 1.22132 0.95257 0.92181 0.96860 1.21149 0.95230 0.96233 0.96068 1.22060 0.97151 0.97434 1.03475 1.21770 1.00091 0.98571 0.98455 0.93069 0.90586 0.97365 0.93231 1.00479 0.92749 0.90960 0.91523 0.91074 0.91401 0.84211 0.91484 0.90905 0.89579 0.93771 0.93448 0.94024 0.93882 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 8.17 60.07 0.49 1.14 16 2 N -0.52 -10.51 3.58 -236.18 -0.85 -11.36 16 3 C 0.14 3.40 2.98 -4.98 -0.01 3.39 16 4 C -0.50 -14.11 9.02 -34.44 -0.31 -14.43 16 5 H 0.08 2.43 7.87 -52.49 -0.41 2.02 16 6 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 7 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 8 Si 0.87 21.55 27.47 -169.99 -4.67 16.88 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 12 C 0.09 1.57 1.57 -67.59 -0.11 1.46 16 13 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 14 C -0.16 -2.20 3.78 -26.65 -0.10 -2.30 16 15 C 0.06 0.70 6.56 -3.79 -0.02 0.67 16 16 N -0.69 -8.37 6.80 -113.75 -0.77 -9.14 16 17 C 0.07 0.86 5.31 -3.83 -0.02 0.84 16 18 C -0.08 -1.29 0.59 -154.43 -0.09 -1.38 16 19 C -0.14 -2.44 6.86 37.16 0.25 -2.18 16 20 C -0.13 -1.96 7.72 37.16 0.29 -1.67 16 21 H 0.05 0.84 6.73 -51.93 -0.35 0.49 16 22 H 0.08 1.61 7.16 -51.93 -0.37 1.24 16 23 H 0.01 0.14 7.63 -51.93 -0.40 -0.25 16 24 H 0.05 1.17 2.98 -51.93 -0.15 1.02 16 25 H -0.02 -0.56 7.47 -51.93 -0.39 -0.94 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.07 1.01 6.35 -51.93 -0.33 0.68 16 28 H 0.07 0.91 6.55 -51.93 -0.34 0.57 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.34 3.87 7.06 -39.29 -0.28 3.59 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.74 6.39 -51.93 -0.33 1.41 16 35 H 0.04 0.65 8.10 -51.93 -0.42 0.22 16 36 H 0.05 0.82 7.39 -51.93 -0.38 0.44 16 37 H 0.04 0.55 5.13 -51.93 -0.27 0.28 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 1.46 7.43 -51.93 -0.39 1.07 16 LS Contribution 281.73 15.07 4.25 4.25 Total: -1.00 -29.25 281.73 -7.50 -36.75 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.50 Total: 2.06 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 0.27 Total: -12.61 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -0.85 Total: -47.32 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.25 -7.50 -36.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300778122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.595 kcal (2) G-P(sol) polarization free energy of solvation -29.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds