Wall clock time and date at job start Mon Mar 30 2020 02:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46765 * 2 1 4 4 C 1.52999 * 109.47000 * 120.00585 * 2 1 3 5 5 C 1.53006 * 109.46626 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47127 * 299.99539 * 5 4 2 7 7 C 1.53002 * 109.46817 * 60.00361 * 6 5 4 8 8 H 1.08996 * 109.47407 * 60.00219 * 7 6 5 9 9 C 1.52997 * 109.46817 * 180.02562 * 7 6 5 10 10 O 1.42898 * 109.47175 * 294.99848 * 9 7 6 11 11 C 1.42909 * 114.00340 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47177 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46998 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00156 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00290 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99704 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00492 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46772 * 59.99457 * 17 15 13 19 19 H 1.48496 * 109.47293 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46974 * 300.00070 * 17 15 13 21 21 C 1.52996 * 109.46972 * 299.99733 * 7 6 5 22 22 H 1.09000 * 109.46866 * 299.99600 * 1 2 3 23 23 H 1.09001 * 109.47372 * 60.00008 * 1 2 3 24 24 H 1.09004 * 109.47107 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47839 * 60.00073 * 4 2 1 26 26 H 1.09000 * 109.47160 * 299.99635 * 4 2 1 27 27 H 1.09001 * 109.46801 * 59.99811 * 5 4 2 28 28 H 1.09001 * 109.46998 * 179.97438 * 5 4 2 29 29 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 30 30 H 1.08996 * 109.46952 * 300.00302 * 6 5 4 31 31 H 1.09001 * 109.47630 * 54.99872 * 9 7 6 32 32 H 1.09002 * 109.47196 * 174.99967 * 9 7 6 33 33 H 1.09004 * 109.46706 * 299.99996 * 11 10 9 34 34 H 1.09004 * 109.46828 * 59.99833 * 11 10 9 35 35 H 1.08998 * 109.47414 * 300.00134 * 12 11 10 36 36 H 1.09004 * 109.47331 * 60.00198 * 12 11 10 37 37 H 0.97003 * 119.99437 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.46993 * 180.02562 * 21 7 6 39 39 H 1.09000 * 109.47380 * 299.99696 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5701 -0.7208 1.2494 6 6 4.0806 -1.4416 0.0001 7 6 3.5705 -0.7202 -1.2490 8 1 3.9335 0.3075 -1.2488 9 6 4.0804 -1.4414 -2.4983 10 8 5.5046 -1.3406 -2.5585 11 6 6.0854 -1.9843 -3.6945 12 6 7.6052 -1.8128 -3.6563 13 6 8.2176 -2.4911 -4.8545 14 1 7.5861 -2.9946 -5.5715 15 6 9.5843 -2.4699 -5.0351 16 7 10.3535 -1.8571 -4.1618 17 14 10.3436 -3.3113 -6.5201 18 1 9.8078 -2.7001 -7.7630 19 1 11.8187 -3.1447 -6.4830 20 1 10.0075 -4.7575 -6.4951 21 6 2.0405 -0.7208 -1.2493 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6768 -1.7490 1.2492 26 1 1.6767 -0.2076 2.1392 27 1 3.9330 0.3071 1.2497 28 1 3.9335 -1.2343 2.1396 29 1 5.1706 -1.4416 0.0005 30 1 3.7176 -2.4693 -0.0001 31 1 3.7921 -2.4917 -2.4547 32 1 3.6458 -0.9819 -3.3860 33 1 5.8386 -3.0459 -3.6761 34 1 5.6923 -1.5356 -4.6068 35 1 7.8517 -0.7512 -3.6748 36 1 7.9987 -2.2612 -2.7440 37 1 11.3151 -1.8425 -4.2888 38 1 1.6772 -0.2073 -2.1394 39 1 1.6776 -1.7486 -1.2496 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300795998.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:42 Heat of formation + Delta-G solvation = -114.994863 kcal Electronic energy + Delta-G solvation = -15640.386111 eV Core-core repulsion = 13159.256264 eV Total energy + Delta-G solvation = -2481.129847 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.13813 -38.47396 -35.42978 -33.83858 -32.59992 -31.59470 -27.32483 -27.03658 -25.90486 -23.10445 -22.69161 -21.43473 -20.64558 -18.69936 -17.10155 -16.91310 -16.63015 -16.19210 -15.42152 -15.33762 -15.13027 -14.52523 -14.32659 -14.06935 -13.74524 -13.21146 -13.13795 -12.84309 -12.70448 -12.48778 -12.47144 -12.29226 -12.04774 -11.86394 -11.67502 -11.53266 -11.39674 -11.29423 -10.94127 -10.84949 -10.64497 -10.39219 -8.24521 -6.38340 1.40315 1.44827 1.52903 2.37180 2.89552 3.08979 3.72802 3.82324 3.89700 4.12508 4.29119 4.35439 4.40472 4.41146 4.51090 4.55244 4.59092 4.67759 4.72944 4.80913 4.87019 4.91694 4.98120 5.04722 5.10918 5.21167 5.27427 5.34890 5.36344 5.41612 5.47487 5.49664 5.55893 5.63788 5.72154 6.10519 6.45638 6.77401 7.31600 8.88460 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.066858 B = 0.004074 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.696406 B = 6870.511469 C = 7140.978376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.065 0.935 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.081 4.081 8 H 0.064 0.936 9 C 0.058 3.942 10 O -0.413 6.413 11 C 0.085 3.915 12 C 0.028 3.972 13 C -0.549 4.549 14 H 0.068 0.932 15 C -0.001 4.001 16 N -0.933 5.933 17 Si 0.977 3.023 18 H -0.264 1.264 19 H -0.282 1.282 20 H -0.264 1.264 21 C -0.101 4.101 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.044 0.956 35 H -0.007 1.007 36 H -0.007 1.007 37 H 0.266 0.734 38 H 0.068 0.932 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.595 1.860 8.164 21.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 H 0.084 0.916 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.149 4.149 7 C -0.099 4.099 8 H 0.082 0.918 9 C -0.019 4.019 10 O -0.333 6.333 11 C 0.009 3.991 12 C -0.009 4.009 13 C -0.586 4.586 14 H 0.086 0.914 15 C -0.199 4.199 16 N -0.572 5.572 17 Si 0.800 3.200 18 H -0.188 1.188 19 H -0.207 1.207 20 H -0.188 1.188 21 C -0.138 4.138 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.011 0.989 36 H 0.011 0.989 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.321 1.998 8.347 21.141 hybrid contribution 0.846 -0.369 -0.801 1.222 sum -18.475 1.628 7.546 20.023 Atomic orbital electron populations 1.21796 0.93955 1.02163 1.02121 1.21113 0.96266 0.99280 0.94259 0.91613 1.21588 0.94346 1.00977 0.97788 1.21531 0.96587 1.00348 0.97040 1.21493 0.99653 0.99262 0.94477 1.21127 0.96422 0.99310 0.93088 0.91789 1.22728 0.80714 0.99787 0.98624 1.87874 1.21125 1.77598 1.46687 1.22455 0.94455 0.95222 0.86967 1.18928 0.90164 0.95670 0.96141 1.21456 0.92859 1.35463 1.08859 0.91403 1.26080 0.97767 0.95958 1.00076 1.70131 1.05175 1.44138 1.37765 0.85334 0.76960 0.79130 0.78607 1.18830 1.20679 1.18826 1.21548 0.92135 1.01523 0.98643 0.91955 0.92436 0.92372 0.91665 0.90947 0.92501 0.91551 0.94014 0.91993 0.93172 0.93076 0.93817 0.93794 0.98897 0.98878 0.92502 0.91305 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.19 71.98 0.66 -1.22 16 2 C -0.09 -1.52 2.72 -10.79 -0.03 -1.54 16 3 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 4 C -0.11 -1.83 5.20 30.60 0.16 -1.67 16 5 C -0.12 -2.46 5.92 30.60 0.18 -2.28 16 6 C -0.11 -2.94 5.10 30.59 0.16 -2.78 16 7 C -0.08 -2.12 2.43 -10.79 -0.03 -2.15 16 8 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 9 C 0.06 1.81 5.32 71.98 0.38 2.19 16 10 O -0.41 -17.56 9.88 -148.98 -1.47 -19.03 16 11 C 0.09 3.90 5.88 71.98 0.42 4.32 16 12 C 0.03 1.61 5.34 29.85 0.16 1.77 16 13 C -0.55 -32.19 9.11 25.60 0.23 -31.96 16 14 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 15 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 16 N -0.93 -58.33 13.29 21.45 0.28 -58.04 16 17 Si 0.98 44.49 29.54 68.60 2.03 46.52 16 18 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 21 C -0.10 -1.97 4.48 30.59 0.14 -1.83 16 22 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 29 H 0.04 1.35 7.82 -2.39 -0.02 1.33 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 35 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 36 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -66.11 310.61 4.70 -61.41 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 0.96 Total: 5.86 kcal Atomic # 6 Polarization: -39.62 SS G_CDS: 2.90 Total: -36.72 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.28 Total: -58.04 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -1.47 Total: -19.03 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -66.11 4.70 -61.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300795998.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.588 kcal (2) G-P(sol) polarization free energy of solvation -66.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds