Wall clock time and date at job start Mon Mar 30 2020 02:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47286 * 2 1 4 4 C 1.52995 * 109.47033 * 119.99996 * 2 1 3 5 5 C 1.53001 * 109.47602 * 60.00061 * 4 2 1 6 6 C 1.52996 * 109.46880 * 59.99608 * 5 4 2 7 7 C 1.52998 * 109.47678 * 300.00537 * 6 5 4 8 8 H 1.09003 * 109.46822 * 299.99810 * 7 6 5 9 9 C 1.52996 * 109.47305 * 180.02562 * 7 6 5 10 10 O 1.42901 * 109.47091 * 65.00095 * 9 7 6 11 11 C 1.42905 * 114.00134 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47264 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47242 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99967 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00542 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00563 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99513 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47173 * 90.00033 * 17 15 13 19 19 H 1.48502 * 109.46811 * 209.99659 * 17 15 13 20 20 H 1.48495 * 109.47087 * 329.99741 * 17 15 13 21 21 C 1.52995 * 109.47096 * 59.99875 * 7 6 5 22 22 H 1.09001 * 109.46966 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.46827 * 300.00225 * 1 2 3 24 24 H 1.08996 * 109.46578 * 60.00402 * 1 2 3 25 25 H 1.09007 * 109.47433 * 180.02562 * 4 2 1 26 26 H 1.09003 * 109.47123 * 299.99555 * 4 2 1 27 27 H 1.08993 * 109.47783 * 180.02562 * 5 4 2 28 28 H 1.09007 * 109.46744 * 300.00443 * 5 4 2 29 29 H 1.09001 * 109.46880 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.47380 * 60.01106 * 6 5 4 31 31 H 1.08994 * 109.47303 * 305.00108 * 9 7 6 32 32 H 1.09002 * 109.47060 * 184.99638 * 9 7 6 33 33 H 1.09001 * 109.47103 * 300.00246 * 11 10 9 34 34 H 1.09004 * 109.47054 * 59.99750 * 11 10 9 35 35 H 1.09001 * 109.46832 * 299.99892 * 12 11 10 36 36 H 1.08992 * 109.47303 * 59.99596 * 12 11 10 37 37 H 0.96999 * 120.00061 * 180.02562 * 16 15 13 38 38 H 1.08994 * 109.47079 * 60.00247 * 21 7 6 39 39 H 1.09003 * 109.47162 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5300 -2.1638 1.2493 6 6 2.0400 -2.8850 0.0001 7 6 1.5301 -2.1638 -1.2492 8 1 0.4400 -2.1638 -1.2492 9 6 2.0396 -2.8854 -2.4984 10 8 1.4692 -4.1943 -2.5582 11 6 1.8821 -4.9569 -3.6941 12 6 1.2142 -6.3328 -3.6548 13 6 1.6501 -7.1372 -4.8523 14 1 2.3347 -6.7096 -5.5699 15 6 1.1750 -8.4190 -5.0319 16 7 1.5550 -9.1208 -6.0772 17 14 -0.0086 -9.1588 -3.7903 18 1 -1.4045 -8.8512 -4.1929 19 1 0.1800 -10.6311 -3.7432 20 1 0.2580 -8.5824 -2.4480 21 6 2.0401 -0.7213 -1.2493 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 3.1301 -0.7209 1.2495 26 1 1.6767 -0.2073 2.1392 27 1 1.8930 -2.6775 2.1395 28 1 0.4400 -2.1637 1.2492 29 1 1.6763 -3.9125 -0.0001 30 1 3.1300 -2.8851 0.0001 31 1 3.1258 -2.9641 -2.4549 32 1 1.7512 -2.3226 -3.3862 33 1 1.5902 -4.4368 -4.6065 34 1 2.9652 -5.0785 -3.6759 35 1 1.5066 -6.8527 -2.7424 36 1 0.1312 -6.2117 -3.6727 37 1 1.2204 -10.0224 -6.2037 38 1 3.1300 -0.7213 -1.2492 39 1 1.6764 -0.2074 -2.1391 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300796002.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:45 Heat of formation + Delta-G solvation = -90.807033 kcal Electronic energy + Delta-G solvation = -15860.584450 eV Core-core repulsion = 13380.503466 eV Total energy + Delta-G solvation = -2480.080984 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.43491 -37.13216 -33.34623 -32.31730 -31.47015 -30.16540 -26.88250 -25.72503 -24.19017 -22.34423 -21.13473 -20.45082 -18.68257 -16.98025 -15.85235 -15.62691 -15.40119 -14.60265 -14.35792 -14.15467 -13.86117 -13.39319 -13.21345 -12.68785 -12.41450 -12.29377 -11.96024 -11.61262 -11.50033 -11.23766 -11.10702 -10.95056 -10.84900 -10.34684 -10.23218 -10.10888 -9.93979 -9.80936 -9.78104 -9.23647 -8.91670 -8.54244 -6.06351 -4.05715 3.33358 3.40067 3.46995 4.18229 4.45835 4.60306 4.65081 4.73860 5.03686 5.17821 5.28317 5.28954 5.37238 5.41224 5.47146 5.56730 5.57376 5.69447 5.73754 5.80817 5.87648 5.91679 5.96183 6.13258 6.16470 6.18274 6.20576 6.23964 6.29969 6.45759 6.53644 6.70488 7.14757 7.40303 7.70966 7.96168 8.48999 8.95926 9.55301 11.06616 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.048926 B = 0.004710 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.153032 B = 5943.099857 C = 6182.124078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 H 0.066 0.934 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.111 4.111 7 C -0.086 4.086 8 H 0.079 0.921 9 C 0.066 3.934 10 O -0.394 6.394 11 C 0.077 3.923 12 C -0.009 4.009 13 C -0.524 4.524 14 H 0.072 0.928 15 C 0.070 3.930 16 N -0.902 5.902 17 Si 0.881 3.119 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.263 1.263 21 C -0.108 4.108 22 H 0.064 0.936 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.024 0.976 36 H 0.019 0.981 37 H 0.264 0.736 38 H 0.062 0.938 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.053 17.926 13.653 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.149 4.149 7 C -0.104 4.104 8 H 0.098 0.902 9 C -0.012 4.012 10 O -0.314 6.314 11 C 0.001 3.999 12 C -0.046 4.046 13 C -0.562 4.562 14 H 0.090 0.910 15 C -0.132 4.132 16 N -0.541 5.541 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.188 1.188 21 C -0.146 4.146 22 H 0.083 0.917 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.042 0.958 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.194 17.673 13.697 22.360 hybrid contribution -0.358 -0.392 0.209 0.570 sum -0.553 17.281 13.905 22.188 Atomic orbital electron populations 1.21960 0.95356 1.02451 1.01223 1.21062 0.95993 0.98736 0.94985 0.91517 1.21574 1.00428 0.95991 0.97196 1.21587 1.01028 0.95262 0.98027 1.21516 1.00318 0.99822 0.93199 1.21161 1.01425 0.93659 0.94195 0.90225 1.22418 0.96711 0.85116 0.96911 1.87863 1.70549 1.25529 1.47459 1.22612 0.98030 0.93134 0.86137 1.19527 0.96263 0.90780 0.98072 1.20954 1.28912 0.98745 1.07557 0.90962 1.24957 0.96113 0.96793 0.95318 1.69905 1.44807 1.11008 1.28347 0.86746 0.81595 0.78119 0.82723 1.20158 1.21308 1.18767 1.21547 1.00574 0.94878 0.97568 0.91696 0.93078 0.92870 0.92159 0.92394 0.92313 0.91757 0.90893 0.92379 0.94068 0.94078 0.94232 0.94200 0.95804 0.96242 0.92602 0.91924 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.50 37.16 0.32 -1.04 16 2 C -0.09 -0.80 3.20 -90.62 -0.29 -1.09 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.11 -1.02 5.45 -26.73 -0.15 -1.17 16 5 C -0.12 -1.24 5.65 -26.73 -0.15 -1.39 16 6 C -0.11 -1.37 5.10 -26.73 -0.14 -1.51 16 7 C -0.09 -1.08 2.15 -90.63 -0.19 -1.27 16 8 H 0.08 1.05 6.43 -51.93 -0.33 0.72 16 9 C 0.07 0.99 5.32 37.16 0.20 1.19 16 10 O -0.39 -7.72 9.88 -35.23 -0.35 -8.07 16 11 C 0.08 1.66 5.88 37.16 0.22 1.88 16 12 C -0.01 -0.23 4.41 -27.89 -0.12 -0.35 16 13 C -0.52 -15.32 9.66 -34.44 -0.33 -15.65 16 14 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 15 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -28.08 13.96 55.43 0.77 -27.30 16 17 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 20 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 21 C -0.11 -1.09 4.73 -26.73 -0.13 -1.22 16 22 H 0.06 0.64 4.81 -51.93 -0.25 0.39 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 29 H 0.07 1.05 7.82 -51.93 -0.41 0.65 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 36 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 299.97 15.07 4.52 4.52 Total: -1.00 -30.60 299.97 -7.76 -38.36 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -7.17 Total: -5.40 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -0.87 Total: -19.65 kcal Atomic # 7 Polarization: -28.08 SS G_CDS: 0.77 Total: -27.30 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.35 Total: -8.07 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.60 -7.76 -38.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300796002.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.443 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds