Wall clock time and date at job start Mon Mar 30 2020 02:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47005 * 2 1 4 4 C 1.53000 * 109.47442 * 239.99817 * 2 1 3 5 5 C 1.53007 * 109.46838 * 300.00074 * 4 2 1 6 6 C 1.53001 * 109.47062 * 299.99643 * 5 4 2 7 7 C 1.53000 * 109.46695 * 60.00231 * 6 5 4 8 8 H 1.08999 * 109.47524 * 60.00148 * 7 6 5 9 9 C 1.53009 * 109.46595 * 179.97438 * 7 6 5 10 10 O 1.42899 * 109.47113 * 294.99956 * 9 7 6 11 11 C 1.42903 * 113.99629 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46999 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46979 * 120.00025 * 17 15 13 20 20 H 1.48498 * 109.46942 * 239.99938 * 17 15 13 21 21 C 1.52999 * 109.47292 * 299.99530 * 7 6 5 22 22 H 1.09001 * 109.47457 * 300.00090 * 1 2 3 23 23 H 1.09000 * 109.47278 * 59.99840 * 1 2 3 24 24 H 1.09001 * 109.47228 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47235 * 59.99584 * 4 2 1 26 26 H 1.08995 * 109.47063 * 180.02562 * 4 2 1 27 27 H 1.08998 * 109.46800 * 59.99825 * 5 4 2 28 28 H 1.09000 * 109.46977 * 179.97438 * 5 4 2 29 29 H 1.08996 * 109.47265 * 300.00530 * 6 5 4 30 30 H 1.08993 * 109.46882 * 179.97438 * 6 5 4 31 31 H 1.09007 * 109.46516 * 174.99889 * 9 7 6 32 32 H 1.09004 * 109.47113 * 55.00358 * 9 7 6 33 33 H 1.09002 * 109.47382 * 59.99956 * 11 10 9 34 34 H 1.09001 * 109.46938 * 299.99942 * 11 10 9 35 35 H 1.09001 * 109.47194 * 299.99575 * 12 11 10 36 36 H 1.08992 * 109.47399 * 59.99748 * 12 11 10 37 37 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.46869 * 180.02562 * 21 7 6 39 39 H 1.08996 * 109.47593 * 300.00267 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -2.1638 -1.2491 6 6 2.0400 -2.8850 0.0002 7 6 1.5299 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2493 9 6 2.0395 -2.8853 2.4986 10 8 1.4692 -4.1942 2.5586 11 6 1.8822 -4.9566 3.6945 12 6 1.2144 -6.3326 3.6553 13 6 1.6494 -7.1363 4.8536 14 1 2.3340 -6.7087 5.5710 15 6 1.1733 -8.4177 5.0338 16 7 0.3392 -8.9383 4.1604 17 14 1.7130 -9.4143 6.5188 18 1 2.6473 -8.6069 7.3437 19 1 0.5235 -9.7768 7.3305 20 1 2.3968 -10.6511 6.0628 21 6 2.0400 -0.7212 1.2493 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6767 -0.2076 -2.1392 26 1 3.1300 -0.7216 -1.2489 27 1 0.4400 -2.1638 -1.2491 28 1 1.8930 -2.6776 -2.1393 29 1 3.1300 -2.8850 0.0002 30 1 1.6763 -3.9125 0.0004 31 1 1.7511 -2.3222 3.3864 32 1 3.1258 -2.9638 2.4552 33 1 1.5903 -4.4364 4.6069 34 1 2.9653 -5.0781 3.6763 35 1 0.1313 -6.2114 3.6733 36 1 1.5067 -6.8524 2.7430 37 1 0.0040 -9.8396 4.2874 38 1 1.6769 -0.2075 2.1395 39 1 3.1299 -0.7211 1.2493 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300796005.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:48 Heat of formation + Delta-G solvation = -94.156087 kcal Electronic energy + Delta-G solvation = -15803.401588 eV Core-core repulsion = 13323.175378 eV Total energy + Delta-G solvation = -2480.226210 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.36745 -37.00729 -33.34357 -32.26454 -31.39625 -29.65918 -26.82431 -25.57215 -24.16149 -22.28707 -21.10089 -20.65277 -18.62091 -16.58201 -15.78762 -15.45226 -15.26122 -14.53742 -14.52444 -14.22089 -13.79263 -13.21146 -13.11678 -12.54721 -12.20212 -12.12132 -11.87608 -11.54480 -11.39080 -11.08511 -11.04498 -10.90235 -10.75917 -10.47242 -10.31111 -10.09646 -9.95919 -9.86975 -9.42217 -9.16015 -8.83035 -8.34344 -6.01681 -4.05106 3.30917 3.37827 3.41987 4.24281 4.48856 4.65989 4.70893 4.82367 5.10009 5.24117 5.34406 5.34748 5.44349 5.47844 5.54178 5.62511 5.63265 5.75594 5.79581 5.87231 5.93258 5.97805 6.01813 6.20475 6.23172 6.26311 6.30107 6.34034 6.37832 6.54725 6.60856 6.92765 7.58767 7.82031 7.86727 8.15815 8.38798 9.01829 9.58564 11.10060 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.061866 B = 0.004239 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.481872 B = 6604.274650 C = 6746.672225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 H 0.066 0.934 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.111 4.111 7 C -0.086 4.086 8 H 0.080 0.920 9 C 0.065 3.935 10 O -0.390 6.390 11 C 0.069 3.931 12 C 0.025 3.975 13 C -0.523 4.523 14 H 0.056 0.944 15 C 0.059 3.941 16 N -0.891 5.891 17 Si 0.896 3.104 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.108 4.108 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.261 0.739 38 H 0.061 0.939 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.854 17.195 -8.819 19.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.108 4.108 3 H 0.084 0.916 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.148 4.148 7 C -0.104 4.104 8 H 0.098 0.902 9 C -0.012 4.012 10 O -0.310 6.310 11 C -0.006 4.006 12 C -0.012 4.012 13 C -0.561 4.561 14 H 0.075 0.925 15 C -0.143 4.143 16 N -0.530 5.530 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.146 4.146 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.629 16.959 -8.991 19.375 hybrid contribution 0.476 -0.513 1.065 1.274 sum 3.104 16.447 -7.926 18.519 Atomic orbital electron populations 1.21961 0.95339 1.02514 1.01180 1.21060 0.96012 0.98677 0.95012 0.91583 1.21573 1.00381 0.96048 0.97160 1.21591 1.01068 0.95195 0.98062 1.21513 1.00225 0.99948 0.93150 1.21156 1.01444 0.93553 0.94250 0.90208 1.22410 0.96575 0.85442 0.96788 1.87906 1.70396 1.25234 1.47476 1.22849 0.97769 0.94183 0.85840 1.19068 0.96514 0.88030 0.97613 1.21110 1.27874 0.98993 1.08162 0.92531 1.24997 0.95022 0.97694 0.96592 1.69992 1.31830 1.15738 1.35451 0.86478 0.78472 0.80054 0.82649 1.19710 1.20912 1.20907 1.21547 1.00513 0.94983 0.97520 0.92907 0.93089 0.91626 0.92416 0.92205 0.91720 0.92310 0.92469 0.90752 0.94296 0.94283 0.94874 0.94871 0.95790 0.95777 0.92925 0.92007 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.50 37.15 0.32 -1.12 16 2 C -0.09 -0.84 3.19 -90.62 -0.29 -1.13 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.11 -1.07 5.45 -26.73 -0.15 -1.22 16 5 C -0.12 -1.32 5.65 -26.73 -0.15 -1.47 16 6 C -0.11 -1.46 5.10 -26.73 -0.14 -1.59 16 7 C -0.09 -1.14 2.15 -90.62 -0.19 -1.33 16 8 H 0.08 1.12 6.43 -51.93 -0.33 0.79 16 9 C 0.07 1.04 5.32 37.16 0.20 1.24 16 10 O -0.39 -8.13 9.88 -35.23 -0.35 -8.48 16 11 C 0.07 1.57 5.88 37.16 0.22 1.79 16 12 C 0.02 0.68 5.34 -27.88 -0.15 0.54 16 13 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 17 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 C -0.11 -1.15 4.73 -26.73 -0.13 -1.28 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.68 4.81 -51.93 -0.25 0.43 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.71 6.43 -51.93 -0.33 0.37 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.15 7.82 -51.93 -0.41 0.74 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 303.58 15.07 4.57 4.57 Total: -1.00 -30.40 303.58 -8.14 -38.53 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -7.21 Total: -5.42 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -0.87 Total: -19.46 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.74 Total: -26.52 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.35 Total: -8.48 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.40 -8.14 -38.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300796005.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.622 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds