Wall clock time and date at job start Mon Mar 30 2020 02:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47202 * 2 1 4 4 C 1.53001 * 109.47368 * 239.99855 * 2 1 3 5 5 C 1.52997 * 109.47162 * 179.97438 * 4 2 1 6 6 H 1.08998 * 109.47651 * 300.00294 * 5 4 2 7 7 O 1.42901 * 109.46856 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.46745 * 60.00613 * 5 4 2 9 9 C 1.53002 * 109.47129 * 299.99449 * 8 5 4 10 10 C 1.53001 * 109.47387 * 300.00384 * 9 8 5 11 11 C 1.53000 * 109.47454 * 180.02562 * 9 8 5 12 12 C 1.53004 * 109.46988 * 59.99952 * 11 9 8 13 13 C 1.50699 * 109.46843 * 180.02562 * 12 11 9 14 14 H 1.08002 * 120.00516 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99783 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99707 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99956 * 180.27458 * 15 13 12 18 18 H 1.48503 * 109.47407 * 269.72718 * 17 15 13 19 19 H 1.48505 * 109.47281 * 29.72474 * 17 15 13 20 20 H 1.48501 * 109.47274 * 149.72572 * 17 15 13 21 21 C 1.53000 * 109.46988 * 119.99796 * 2 1 3 22 22 H 1.09006 * 109.47053 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47419 * 300.00102 * 1 2 3 24 24 H 1.08998 * 109.46959 * 60.00380 * 1 2 3 25 25 H 1.09007 * 109.46685 * 60.00003 * 4 2 1 26 26 H 1.08998 * 109.47077 * 300.00221 * 4 2 1 27 27 H 0.96695 * 113.99772 * 60.01425 * 7 5 4 28 28 H 1.09001 * 109.47222 * 180.02562 * 8 5 4 29 29 H 1.08999 * 109.47781 * 59.99708 * 8 5 4 30 30 H 1.09001 * 109.46667 * 299.99775 * 10 9 8 31 31 H 1.08998 * 109.46846 * 59.99406 * 10 9 8 32 32 H 1.08997 * 109.47361 * 179.97438 * 10 9 8 33 33 H 1.09006 * 109.46826 * 300.00300 * 11 9 8 34 34 H 1.08997 * 109.47123 * 180.02562 * 11 9 8 35 35 H 1.09001 * 109.46361 * 60.00532 * 12 11 9 36 36 H 1.08997 * 109.46991 * 300.00423 * 12 11 9 37 37 H 0.97005 * 119.99656 * 179.97438 * 16 15 13 38 38 H 1.09006 * 109.46826 * 60.00348 * 21 2 1 39 39 H 1.08997 * 109.47123 * 300.00283 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 1 3.9331 0.3071 -1.2497 7 8 4.0464 -1.3949 -2.4160 8 6 4.0805 -1.4417 -0.0003 9 6 3.5705 -0.7204 1.2490 10 6 4.0800 0.7223 1.2488 11 6 4.0814 -1.4410 2.4983 12 6 5.6114 -1.4400 2.4977 13 6 6.1146 -2.1503 3.7279 14 1 5.4133 -2.5609 4.4392 15 6 7.4704 -2.2750 3.9459 16 7 8.3243 -1.7736 3.0804 17 14 8.0941 -3.1621 5.4668 18 1 8.2634 -2.1871 6.5741 19 1 7.1145 -4.2031 5.8694 20 1 9.4003 -3.8014 5.1662 21 6 2.0400 -0.7212 1.2493 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6767 -0.2074 -2.1392 26 1 1.6768 -1.7489 -1.2492 27 1 3.7609 -0.9918 -3.2473 28 1 5.1705 -1.4409 -0.0002 29 1 3.7175 -2.4695 0.0000 30 1 5.1700 0.7226 1.2486 31 1 3.7164 1.2358 0.3588 32 1 3.7163 1.2362 2.1385 33 1 3.7187 -2.4689 2.4986 34 1 3.7177 -0.9274 3.3882 35 1 5.9740 -0.4121 2.4974 36 1 5.9747 -1.9538 1.6077 37 1 9.2781 -1.8610 3.2339 38 1 1.6767 -1.7489 1.2492 39 1 1.6766 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306192830.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:36 Heat of formation + Delta-G solvation = -116.179647 kcal Electronic energy + Delta-G solvation = -16585.563794 eV Core-core repulsion = 14104.382571 eV Total energy + Delta-G solvation = -2481.181223 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.97105 -37.44519 -35.95554 -34.52042 -31.64844 -30.62533 -27.95429 -27.34401 -26.76575 -23.46529 -22.68565 -20.86015 -19.33673 -18.56601 -17.88481 -16.54546 -16.24140 -15.98673 -15.54712 -15.31161 -14.70244 -14.37060 -14.08869 -13.84518 -13.37523 -13.24878 -13.15496 -12.86058 -12.80258 -12.55087 -12.46073 -12.26937 -11.98962 -11.94451 -11.58812 -11.47816 -11.33227 -11.15592 -11.03793 -10.60248 -10.50930 -10.44748 -8.18658 -6.29279 1.37779 1.39577 1.50586 2.40737 3.13895 3.28781 3.69847 3.78088 4.07676 4.10603 4.20249 4.32694 4.38799 4.49496 4.57472 4.72086 4.77753 4.82901 4.89378 4.91649 5.03654 5.08455 5.11506 5.17795 5.19406 5.23965 5.30453 5.34842 5.43319 5.47305 5.52143 5.60969 5.68873 5.87533 5.90794 6.29542 6.89093 6.97186 7.39269 8.92898 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.038696 B = 0.006341 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.418864 B = 4414.849213 C = 4815.470618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 H 0.080 0.920 4 C -0.134 4.134 5 C 0.106 3.894 6 H 0.062 0.938 7 O -0.589 6.589 8 C -0.100 4.100 9 C -0.050 4.050 10 C -0.140 4.140 11 C -0.091 4.091 12 C 0.027 3.973 13 C -0.545 4.545 14 H 0.056 0.944 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.963 3.037 18 H -0.270 1.270 19 H -0.265 1.265 20 H -0.282 1.282 21 C -0.100 4.100 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.392 0.608 28 H 0.037 0.963 29 H 0.049 0.951 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.051 0.949 35 H -0.002 1.002 36 H -0.010 1.010 37 H 0.262 0.738 38 H 0.057 0.943 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.392 5.270 -8.483 18.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 H 0.098 0.902 4 C -0.172 4.172 5 C 0.047 3.953 6 H 0.079 0.921 7 O -0.398 6.398 8 C -0.138 4.138 9 C -0.050 4.050 10 C -0.197 4.197 11 C -0.128 4.128 12 C -0.010 4.010 13 C -0.583 4.583 14 H 0.074 0.926 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.787 3.213 18 H -0.196 1.196 19 H -0.189 1.189 20 H -0.208 1.208 21 C -0.137 4.137 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.241 0.759 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.016 0.984 36 H 0.008 0.992 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.953 4.897 -8.071 17.684 hybrid contribution 0.827 -0.301 0.404 0.968 sum -14.126 4.596 -7.667 16.717 Atomic orbital electron populations 1.21780 0.93654 1.01994 1.02404 1.21122 0.96493 0.99696 0.93346 0.90219 1.22239 0.94211 1.01513 0.99188 1.21867 0.93831 0.94980 0.84580 0.92062 1.86527 1.77635 1.58567 1.17046 1.21489 0.99701 0.98979 0.93583 1.20456 0.95864 0.95325 0.93331 1.21965 1.00194 0.95378 1.02115 1.21520 0.96289 0.98563 0.96450 1.19065 0.92134 0.95075 0.94731 1.21788 0.92177 1.36256 1.08095 0.92613 1.25970 0.97363 0.96561 0.99940 1.70109 1.02336 1.47280 1.37685 0.85486 0.77672 0.78883 0.79243 1.19588 1.18904 1.20753 1.21666 0.92672 1.00739 0.98625 0.92882 0.92142 0.91483 0.89532 0.92037 0.75857 0.94385 0.93181 0.94816 0.90672 0.92315 0.94044 0.92987 0.98364 0.99181 0.92884 0.92450 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.19 71.98 0.66 -1.60 16 2 C -0.09 -1.79 2.45 -10.79 -0.03 -1.82 16 3 H 0.08 1.55 6.43 -2.39 -0.02 1.53 16 4 C -0.13 -2.80 4.82 30.59 0.15 -2.66 16 5 C 0.11 2.91 3.20 30.59 0.10 3.01 16 6 H 0.06 1.61 6.43 -2.39 -0.02 1.59 16 7 O -0.59 -16.53 13.32 -148.98 -1.98 -18.51 16 8 C -0.10 -3.62 4.03 30.59 0.12 -3.49 16 9 C -0.05 -1.69 0.54 -52.16 -0.03 -1.71 16 10 C -0.14 -4.53 7.43 71.98 0.53 -4.00 16 11 C -0.09 -3.88 4.21 30.60 0.13 -3.75 16 12 C 0.03 1.47 4.27 29.85 0.13 1.59 16 13 C -0.55 -32.33 9.11 25.60 0.23 -32.10 16 14 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 15 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 16 N -0.93 -58.78 13.29 21.45 0.28 -58.50 16 17 Si 0.96 45.72 29.54 68.60 2.03 47.75 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 C -0.10 -2.61 4.02 30.61 0.12 -2.49 16 22 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.39 6.59 9.08 -74.06 -0.67 5.92 16 28 H 0.04 1.67 6.43 -2.39 -0.02 1.66 16 29 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.03 1.31 6.43 -2.39 -0.02 1.29 16 31 H 0.07 1.97 4.81 -2.39 -0.01 1.96 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.05 2.15 8.14 -2.39 -0.02 2.14 16 35 H 0.00 -0.11 6.43 -2.39 -0.02 -0.13 16 36 H -0.01 -0.61 6.43 -2.39 -0.02 -0.62 16 37 H 0.26 15.50 8.31 -92.70 -0.77 14.72 16 38 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -69.31 294.25 3.25 -66.06 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.34 Total: 11.80 kcal Atomic # 6 Polarization: -51.20 SS G_CDS: 2.58 Total: -48.61 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.28 Total: -58.50 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -1.98 Total: -18.51 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -69.31 3.25 -66.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306192830.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.118 kcal (2) G-P(sol) polarization free energy of solvation -69.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds