Wall clock time and date at job start Mon Mar 30 2020 02:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47278 * 2 1 4 4 C 1.53003 * 109.46974 * 240.00055 * 2 1 3 5 5 C 1.52998 * 109.47157 * 179.97438 * 4 2 1 6 6 H 1.08998 * 109.47292 * 179.97438 * 5 4 2 7 7 O 1.42895 * 109.47453 * 299.99998 * 5 4 2 8 8 C 1.53003 * 109.46869 * 60.00097 * 5 4 2 9 9 C 1.52994 * 109.47169 * 299.99745 * 8 5 4 10 10 C 1.52996 * 109.47208 * 300.00374 * 9 8 5 11 11 C 1.53003 * 109.47169 * 180.02562 * 9 8 5 12 12 C 1.52998 * 109.46869 * 60.00255 * 11 9 8 13 13 C 1.50708 * 109.46875 * 180.02562 * 12 11 9 14 14 H 1.07997 * 120.00048 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99799 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00125 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99871 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47203 * 60.00014 * 17 15 13 19 19 H 1.48500 * 109.46963 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47156 * 299.99610 * 17 15 13 21 21 C 1.53003 * 109.47137 * 120.00100 * 2 1 3 22 22 H 1.09002 * 109.46900 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46686 * 299.99823 * 1 2 3 24 24 H 1.08994 * 109.46940 * 59.99558 * 1 2 3 25 25 H 1.09000 * 109.47185 * 59.99718 * 4 2 1 26 26 H 1.09002 * 109.47073 * 300.00070 * 4 2 1 27 27 H 0.96701 * 114.00246 * 300.00469 * 7 5 4 28 28 H 1.09002 * 109.47119 * 59.99862 * 8 5 4 29 29 H 1.08997 * 109.47053 * 179.97438 * 8 5 4 30 30 H 1.09001 * 109.47165 * 191.51780 * 10 9 8 31 31 H 1.09001 * 109.47244 * 311.51136 * 10 9 8 32 32 H 1.08998 * 109.47622 * 71.51834 * 10 9 8 33 33 H 1.08998 * 109.46936 * 180.02562 * 11 9 8 34 34 H 1.09002 * 109.47119 * 300.00117 * 11 9 8 35 35 H 1.08998 * 109.47292 * 299.99722 * 12 11 9 36 36 H 1.09002 * 109.47363 * 60.00012 * 12 11 9 37 37 H 0.97001 * 119.99996 * 180.02562 * 16 15 13 38 38 H 1.08998 * 109.46936 * 299.99880 * 21 2 1 39 39 H 1.09002 * 109.46974 * 60.00338 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 1 3.9333 -1.2349 -2.1394 7 8 4.0459 0.6266 -1.2500 8 6 4.0805 -1.4417 -0.0004 9 6 3.5706 -0.7204 1.2488 10 6 4.0801 0.7222 1.2485 11 6 4.0816 -1.4410 2.4981 12 6 5.6116 -1.4399 2.4974 13 6 6.1150 -2.1502 3.7276 14 1 5.4137 -2.5609 4.4389 15 6 7.4707 -2.2748 3.9454 16 7 8.3246 -1.7743 3.0795 17 14 8.0946 -3.1546 5.4706 18 1 7.6010 -4.5552 5.4709 19 1 9.5796 -3.1536 5.4698 20 1 7.5993 -2.4549 6.6830 21 6 2.0401 -0.7213 1.2493 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.6766 -0.2075 -2.1393 26 1 1.6767 -1.7489 -1.2493 27 1 3.7602 1.1446 -2.0150 28 1 3.7175 -2.4695 -0.0002 29 1 5.1705 -1.4417 -0.0009 30 1 3.8941 1.1734 2.2231 31 1 5.1505 0.7295 1.0431 32 1 3.5586 1.2916 0.4791 33 1 3.7179 -0.9274 3.3880 34 1 3.7190 -2.4689 2.4985 35 1 5.9749 -1.9538 1.6074 36 1 5.9742 -0.4120 2.4969 37 1 9.2784 -1.8622 3.2325 38 1 1.6767 -0.2074 2.1392 39 1 1.6768 -1.7490 1.2492 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306192835.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:39 Heat of formation + Delta-G solvation = -88.993615 kcal Electronic energy + Delta-G solvation = -16788.179388 eV Core-core repulsion = 14308.177040 eV Total energy + Delta-G solvation = -2480.002348 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.79898 -35.73198 -34.39347 -32.52983 -30.35651 -29.08831 -26.29275 -26.23388 -24.79164 -21.65143 -21.49847 -19.51156 -17.93098 -16.66414 -16.31077 -15.13628 -14.76941 -14.42232 -14.09476 -13.63548 -13.24375 -12.77227 -12.59005 -12.26908 -12.03237 -11.88413 -11.68177 -11.38593 -11.18240 -10.95027 -10.84007 -10.67412 -10.54035 -10.40449 -10.05310 -9.90242 -9.79663 -9.44598 -9.16235 -8.88281 -8.74662 -8.21818 -5.89869 -3.91286 3.38393 3.42444 3.45193 4.50542 4.53470 4.89435 4.93696 4.99031 5.36219 5.44402 5.45423 5.55956 5.67997 5.74496 5.80126 5.84730 5.90832 5.94068 6.06702 6.20319 6.36409 6.36709 6.48633 6.55507 6.57299 6.72551 6.78638 6.95577 7.00406 7.09493 7.27661 7.37823 7.82155 7.91384 8.02449 8.13791 8.56622 9.16676 9.71654 11.21234 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.045098 B = 0.006381 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.722482 B = 4386.925778 C = 4691.127341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.079 0.921 4 C -0.143 4.143 5 C 0.104 3.896 6 H 0.046 0.954 7 O -0.546 6.546 8 C -0.103 4.103 9 C -0.053 4.053 10 C -0.132 4.132 11 C -0.101 4.101 12 C 0.022 3.978 13 C -0.519 4.519 14 H 0.051 0.949 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.888 3.112 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.102 4.102 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.359 0.641 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.033 0.967 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.041 0.959 35 H 0.017 0.983 36 H 0.019 0.981 37 H 0.259 0.741 38 H 0.057 0.943 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.333 3.604 -9.546 16.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.097 0.903 4 C -0.181 4.181 5 C 0.046 3.954 6 H 0.064 0.936 7 O -0.351 6.351 8 C -0.140 4.140 9 C -0.053 4.053 10 C -0.189 4.189 11 C -0.139 4.139 12 C -0.015 4.015 13 C -0.558 4.558 14 H 0.070 0.930 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.717 3.283 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.140 4.140 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.205 0.795 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.868 3.414 -9.009 16.075 hybrid contribution 0.157 -0.471 0.336 0.600 sum -12.710 2.943 -8.674 15.667 Atomic orbital electron populations 1.21854 0.96133 1.01336 1.01083 1.21127 0.94185 1.00634 0.94934 0.90281 1.22278 0.96800 1.01118 0.97869 1.21832 0.91933 0.83392 0.98284 0.93606 1.86876 1.77063 1.23555 1.47598 1.21697 1.02433 0.97487 0.92428 1.20502 0.92986 0.96515 0.95327 1.22012 1.02033 0.95056 0.99768 1.21706 0.99953 0.97807 0.94436 1.19162 0.88618 0.97203 0.96496 1.21308 0.91466 1.35779 1.07227 0.93050 1.25006 0.97120 0.95867 0.96433 1.69961 1.01928 1.45997 1.35691 0.86720 0.77565 0.80249 0.83812 1.20367 1.21355 1.20345 1.21677 0.96142 0.99586 0.96582 0.93082 0.92879 0.93326 0.92586 0.91492 0.79517 0.91469 0.90094 0.94812 0.92413 0.91017 0.93683 0.93974 0.96487 0.96225 0.93111 0.92452 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.19 37.16 0.34 -1.18 16 2 C -0.09 -1.11 2.38 -90.61 -0.22 -1.32 16 3 H 0.08 1.02 5.94 -51.93 -0.31 0.71 16 4 C -0.14 -1.63 4.92 -26.73 -0.13 -1.76 16 5 C 0.10 1.40 3.77 -26.73 -0.10 1.30 16 6 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 7 O -0.55 -7.40 9.11 -35.23 -0.32 -7.72 16 8 C -0.10 -1.75 4.23 -26.73 -0.11 -1.87 16 9 C -0.05 -0.94 0.54 -154.48 -0.08 -1.03 16 10 C -0.13 -2.41 6.40 37.16 0.24 -2.17 16 11 C -0.10 -2.19 4.18 -26.73 -0.11 -2.30 16 12 C 0.02 0.59 4.28 -27.88 -0.12 0.47 16 13 C -0.52 -15.22 9.11 -34.44 -0.31 -15.54 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.90 -27.68 13.29 55.43 0.74 -26.94 16 17 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 C -0.10 -1.51 4.02 -26.70 -0.11 -1.62 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.36 3.25 9.08 45.56 0.41 3.67 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.62 6.43 -51.93 -0.33 1.29 16 30 H 0.03 0.62 8.10 -51.93 -0.42 0.20 16 31 H 0.06 1.20 7.03 -51.93 -0.36 0.84 16 32 H 0.07 1.16 3.80 -51.93 -0.20 0.96 16 33 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.02 0.47 6.43 -51.93 -0.33 0.14 16 36 H 0.02 0.56 6.70 -51.93 -0.35 0.21 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 290.86 15.07 4.38 4.38 Total: -1.00 -31.33 290.86 -7.12 -38.45 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.08 Total: 0.05 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -0.82 Total: -25.45 kcal Atomic # 7 Polarization: -27.68 SS G_CDS: 0.74 Total: -26.94 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.32 Total: -7.72 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.33 -7.12 -38.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306192835.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.547 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds