Wall clock time and date at job start Mon Mar 30 2020 02:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47486 * 2 1 4 4 C 1.52997 * 109.47269 * 239.99665 * 2 1 3 5 5 H 1.08995 * 110.33204 * 187.25613 * 4 2 1 6 6 C 1.54483 * 110.37058 * 65.00176 * 4 2 1 7 7 C 1.54507 * 104.06148 * 217.19018 * 6 4 2 8 8 C 1.54484 * 104.06556 * 0.02562 * 7 6 4 9 9 H 1.08995 * 110.37369 * 265.03713 * 8 7 6 10 10 C 1.50701 * 110.37146 * 142.80638 * 8 7 6 11 11 H 1.07999 * 120.00016 * 0.02562 * 10 8 7 12 12 C 1.37877 * 120.00113 * 179.97438 * 10 8 7 13 13 N 1.31517 * 119.99581 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 120.00302 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46970 * 90.00203 * 14 12 10 16 16 H 1.48498 * 109.47544 * 210.00302 * 14 12 10 17 17 H 1.48503 * 109.47219 * 330.00408 * 14 12 10 18 18 O 1.44423 * 104.79971 * 23.97823 * 8 7 6 19 19 C 1.53006 * 109.46623 * 119.99829 * 2 1 3 20 20 C 1.52999 * 109.46626 * 179.97438 * 19 2 1 21 21 C 1.52997 * 109.47164 * 299.99900 * 19 2 1 22 22 C 1.52997 * 109.47127 * 60.00064 * 19 2 1 23 23 H 1.09001 * 109.47362 * 300.00723 * 1 2 3 24 24 H 1.09002 * 109.46716 * 60.00082 * 1 2 3 25 25 H 1.09000 * 109.47486 * 179.97438 * 1 2 3 26 26 H 1.08998 * 110.50960 * 335.83482 * 6 4 2 27 27 H 1.09001 * 110.50571 * 98.41168 * 6 4 2 28 28 H 1.09003 * 110.51441 * 118.64551 * 7 6 4 29 29 H 1.09002 * 110.51447 * 241.21733 * 7 6 4 30 30 H 0.97000 * 119.99865 * 179.97438 * 13 12 10 31 31 H 1.09000 * 109.47160 * 60.00369 * 20 19 2 32 32 H 1.09002 * 109.46719 * 180.02562 * 20 19 2 33 33 H 1.08993 * 109.47839 * 299.99931 * 20 19 2 34 34 H 1.09001 * 109.47375 * 59.99966 * 21 19 2 35 35 H 1.09002 * 109.46777 * 180.02562 * 21 19 2 36 36 H 1.09000 * 109.47140 * 299.99948 * 21 19 2 37 37 H 1.09004 * 109.47261 * 59.99697 * 22 19 2 38 38 H 1.09002 * 109.47153 * 179.97438 * 22 19 2 39 39 H 1.09001 * 109.47289 * 299.99953 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 3.1221 -0.8426 -1.2011 6 6 1.6423 0.0598 -2.5212 7 6 1.3102 -1.0434 -3.5507 8 6 1.5460 -2.3606 -2.7787 9 1 2.5515 -2.7363 -2.9675 10 6 0.5193 -3.3908 -3.1733 11 1 -0.2371 -3.1469 -3.9045 12 6 0.5464 -4.6452 -2.6016 13 7 1.4679 -4.9424 -1.7116 14 14 -0.7257 -5.9225 -3.0911 15 1 -0.2189 -6.7091 -4.2442 16 1 -0.9805 -6.8319 -1.9452 17 1 -1.9890 -5.2418 -3.4733 18 8 1.3926 -2.0052 -1.3873 19 6 2.0399 -0.7213 1.2494 20 6 3.5699 -0.7218 1.2490 21 6 1.5299 0.0000 2.4985 22 6 1.5298 -2.1637 1.2493 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7666 0.6801 -2.3303 27 1 2.4743 0.6719 -2.8692 28 1 0.2703 -0.9685 -3.8689 29 1 1.9772 -0.9770 -4.4103 30 1 1.4868 -5.8247 -1.3091 31 1 3.9336 0.3057 1.2488 32 1 3.9331 -1.2360 2.1388 33 1 3.9329 -1.2359 0.3592 34 1 0.4398 0.0001 2.4985 35 1 1.8935 -0.5136 3.3885 36 1 1.8933 1.0277 2.4985 37 1 1.8932 -2.6776 0.3594 38 1 1.8935 -2.6777 2.1392 39 1 0.4398 -2.1637 1.2493 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306788807.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:01 Heat of formation + Delta-G solvation = -70.479873 kcal Electronic energy + Delta-G solvation = -17299.796376 eV Core-core repulsion = 14820.596844 eV Total energy + Delta-G solvation = -2479.199532 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.11869 -36.50981 -32.60022 -31.11730 -30.38294 -28.11409 -26.64301 -26.45679 -24.50303 -22.78269 -20.45533 -19.68003 -17.64081 -16.58478 -15.49521 -14.67559 -14.43271 -14.11738 -13.88733 -13.54779 -13.12268 -12.73967 -12.35993 -12.02176 -11.79124 -11.55911 -11.40588 -11.13168 -11.06757 -10.90845 -10.75937 -10.63250 -10.49271 -10.25766 -9.93868 -9.86960 -9.81959 -9.37435 -9.25270 -9.00695 -8.50553 -7.93356 -5.98108 -4.08909 3.32203 3.39331 3.42624 4.45093 5.01323 5.17324 5.34432 5.34927 5.60800 5.65755 5.75382 5.87363 5.90241 5.96790 6.03294 6.10003 6.18453 6.26723 6.28267 6.36076 6.39204 6.50622 6.57113 6.63365 6.69966 6.75416 6.75838 6.90045 6.92267 6.93087 7.00869 7.21911 7.56455 7.68642 7.92886 8.32063 8.63961 9.02559 9.60784 11.09615 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029416 B = 0.009487 C = 0.008302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.627503 B = 2950.715391 C = 3371.709514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.068 4.068 3 H 0.060 0.940 4 C 0.068 3.932 5 H 0.050 0.950 6 C -0.153 4.153 7 C -0.146 4.146 8 C 0.202 3.798 9 H 0.023 0.977 10 C -0.526 4.526 11 H 0.060 0.940 12 C 0.078 3.922 13 N -0.863 5.863 14 Si 0.889 3.111 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 O -0.334 6.334 19 C -0.060 4.060 20 C -0.141 4.141 21 C -0.140 4.140 22 C -0.146 4.146 23 H 0.042 0.958 24 H 0.047 0.953 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.260 0.740 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.044 0.956 37 H 0.107 0.893 38 H 0.029 0.971 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.455 9.005 4.541 10.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 H 0.079 0.921 4 C 0.009 3.991 5 H 0.067 0.933 6 C -0.191 4.191 7 C -0.184 4.184 8 C 0.147 3.853 9 H 0.041 0.959 10 C -0.563 4.563 11 H 0.078 0.922 12 C -0.127 4.127 13 N -0.500 5.500 14 Si 0.716 3.284 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 O -0.253 6.253 19 C -0.060 4.060 20 C -0.198 4.198 21 C -0.197 4.197 22 C -0.203 4.203 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.125 0.875 38 H 0.048 0.952 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.416 8.738 4.830 10.084 hybrid contribution -0.525 -0.513 -0.374 0.824 sum 0.891 8.225 4.456 9.397 Atomic orbital electron populations 1.21848 0.95153 1.03328 0.99715 1.21136 0.96364 0.97317 0.93856 0.92130 1.22817 0.96100 0.87503 0.92723 0.93265 1.23016 1.00323 0.98536 0.97204 1.23013 1.00772 0.96915 0.97662 1.20483 0.96557 0.89841 0.78426 0.95921 1.21023 1.15361 0.95699 1.24225 0.92152 1.25034 0.95236 0.98173 0.94288 1.70011 1.32778 1.20821 1.26392 0.86667 0.82176 0.81497 0.78024 1.20676 1.21160 1.19857 1.89504 1.76066 1.30611 1.29138 1.20478 0.94746 0.96963 0.93838 1.21914 0.95569 1.00495 1.01835 1.21934 1.01037 0.99311 0.97457 1.22108 1.00883 0.94179 1.03094 0.93941 0.93394 0.90597 0.91834 0.92908 0.92089 0.93187 0.93038 0.93724 0.93372 0.91958 0.92623 0.93399 0.93642 0.87510 0.95232 0.93219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.06 37.16 0.30 -2.14 16 2 C -0.07 -1.15 1.72 -90.62 -0.16 -1.30 16 3 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.07 1.32 2.59 -25.95 -0.07 1.26 16 5 H 0.05 0.98 6.13 -51.93 -0.32 0.66 16 6 C -0.15 -2.81 6.47 -25.16 -0.16 -2.97 16 7 C -0.15 -3.08 6.62 -25.16 -0.17 -3.25 16 8 C 0.20 5.17 3.06 -27.10 -0.08 5.08 16 9 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 10 C -0.53 -14.66 8.77 -34.44 -0.30 -14.97 16 11 H 0.06 1.66 7.57 -52.49 -0.40 1.26 16 12 C 0.08 2.19 5.43 -17.82 -0.10 2.09 16 13 N -0.86 -25.05 13.07 55.43 0.72 -24.32 16 14 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 O -0.33 -8.10 6.53 -35.23 -0.23 -8.33 16 19 C -0.06 -0.98 0.57 -154.51 -0.09 -1.07 16 20 C -0.14 -2.16 8.14 37.16 0.30 -1.85 16 21 C -0.14 -1.95 8.12 37.16 0.30 -1.65 16 22 C -0.15 -2.83 7.32 37.16 0.27 -2.56 16 23 H 0.04 0.62 6.43 -51.93 -0.33 0.29 16 24 H 0.05 0.80 6.39 -51.93 -0.33 0.46 16 25 H 0.08 1.51 5.79 -51.93 -0.30 1.21 16 26 H 0.06 1.10 6.11 -51.93 -0.32 0.78 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 1.30 7.70 -51.93 -0.40 0.90 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.05 6.29 -51.93 -0.33 0.72 16 34 H 0.05 0.77 6.43 -51.93 -0.33 0.43 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.11 2.51 5.44 -51.93 -0.28 2.23 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.99 6.43 -51.93 -0.33 0.66 16 LS Contribution 289.64 15.07 4.36 4.36 Total: -1.00 -28.29 289.64 -6.72 -35.02 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.62 Total: 0.21 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: 0.05 Total: -23.33 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.72 Total: -24.32 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.23 Total: -8.33 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.29 -6.72 -35.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306788807.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.461 kcal (2) G-P(sol) polarization free energy of solvation -28.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds