Wall clock time and date at job start Mon Mar 30 2020 02:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46487 * 2 1 4 4 C 1.52995 * 109.47154 * 240.00516 * 2 1 3 5 5 H 1.09004 * 109.82050 * 184.74015 * 4 2 1 6 6 C 1.54383 * 109.83542 * 63.76517 * 4 2 1 7 7 C 1.55302 * 102.25471 * 219.12939 * 6 4 2 8 8 C 1.54944 * 100.94237 * 34.12987 * 7 6 4 9 9 H 1.08998 * 110.31233 * 82.47087 * 8 7 6 10 10 C 1.50694 * 110.31072 * 204.64091 * 8 7 6 11 11 H 1.08001 * 119.99890 * 0.89439 * 10 8 7 12 12 C 1.37881 * 120.00107 * 180.89158 * 10 8 7 13 13 N 1.31518 * 119.99669 * 189.59418 * 12 10 8 14 14 Si 1.86794 * 120.00039 * 9.59353 * 12 10 8 15 15 H 1.48503 * 109.47015 * 94.79453 * 14 12 10 16 16 H 1.48499 * 109.47266 * 214.79547 * 14 12 10 17 17 H 1.48500 * 109.47248 * 334.79672 * 14 12 10 18 18 O 1.43236 * 109.83130 * 305.63000 * 4 2 1 19 19 C 1.52987 * 109.47183 * 119.99958 * 2 1 3 20 20 C 1.53004 * 109.47051 * 58.83745 * 19 2 1 21 21 C 1.52999 * 109.47242 * 178.83486 * 19 2 1 22 22 C 1.53000 * 109.47788 * 298.83491 * 19 2 1 23 23 H 1.09002 * 109.46565 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47022 * 60.00328 * 1 2 3 25 25 H 1.08990 * 109.47253 * 299.99669 * 1 2 3 26 26 H 1.09002 * 110.84203 * 337.32156 * 6 4 2 27 27 H 1.08999 * 110.84843 * 100.93484 * 6 4 2 28 28 H 1.08997 * 111.12181 * 276.20999 * 7 6 4 29 29 H 1.08996 * 111.16237 * 152.06449 * 7 6 4 30 30 H 0.97002 * 119.99643 * 180.02562 * 13 12 10 31 31 H 1.08998 * 109.47320 * 68.33686 * 20 19 2 32 32 H 1.09006 * 109.47337 * 188.33289 * 20 19 2 33 33 H 1.09002 * 109.47057 * 308.33616 * 20 19 2 34 34 H 1.08999 * 109.47247 * 60.00452 * 21 19 2 35 35 H 1.09000 * 109.47584 * 180.02562 * 21 19 2 36 36 H 1.09005 * 109.47400 * 300.00401 * 21 19 2 37 37 H 1.09008 * 109.46705 * 59.99936 * 22 19 2 38 38 H 1.09000 * 109.47619 * 179.97438 * 22 19 2 39 39 H 1.08998 * 109.47002 * 300.00569 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 1 3.1267 -0.7984 -1.2137 6 6 1.6094 0.0532 -2.5136 7 6 1.2431 -1.0942 -3.4940 8 6 0.6637 -2.1450 -2.5138 9 1 -0.3797 -1.9206 -2.2920 10 6 0.7898 -3.5291 -3.0961 11 1 1.2501 -3.6682 -4.0632 12 6 0.3177 -4.6180 -2.3943 13 7 0.5926 -5.8360 -2.8074 14 14 -0.7121 -4.3632 -0.8568 15 1 -2.1530 -4.4098 -1.2129 16 1 -0.4099 -5.4358 0.1247 17 1 -0.3921 -3.0416 -0.2601 18 8 1.4620 -2.0294 -1.3251 19 6 2.0400 -0.7212 1.2491 20 6 1.5062 -2.1550 1.2639 21 6 3.5697 -0.7466 1.2346 22 6 1.5542 0.0167 2.4983 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 0.5137 0.8899 26 1 0.7414 0.6796 -2.3078 27 1 2.4349 0.6484 -2.9039 28 1 2.1296 -1.4761 -4.0004 29 1 0.4909 -0.7716 -4.2138 30 1 0.2601 -6.6020 -2.3139 31 1 1.9690 -2.7233 0.4571 32 1 1.7442 -2.6216 2.2198 33 1 0.4252 -2.1417 1.1252 34 1 3.9500 0.2748 1.2241 35 1 3.9331 -1.2608 2.1243 36 1 3.9160 -1.2724 0.3447 37 1 0.4643 0.0348 2.5087 38 1 1.9172 -0.4974 3.3883 39 1 1.9344 1.0382 2.4878 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306788809.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:06 Heat of formation + Delta-G solvation = -81.121862 kcal Electronic energy + Delta-G solvation = -17534.326078 eV Core-core repulsion = 15054.665075 eV Total energy + Delta-G solvation = -2479.661004 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.91691 -38.07031 -34.71150 -32.93366 -32.04949 -30.15059 -28.22256 -28.01333 -26.20742 -24.18692 -21.97170 -21.57253 -19.05751 -18.90643 -17.28432 -17.06371 -16.02628 -15.82690 -15.35974 -14.96957 -14.68002 -14.47025 -14.02751 -13.88147 -13.20062 -13.17810 -12.84255 -12.80755 -12.69725 -12.45153 -12.25889 -12.20752 -12.11161 -11.78042 -11.51970 -11.45709 -11.21913 -11.14272 -11.07768 -10.81545 -10.61828 -9.71622 -8.32755 -6.42474 1.37378 1.41086 1.63499 2.42985 2.94391 3.55791 3.86840 3.91696 4.04979 4.10158 4.28963 4.36764 4.49572 4.59264 4.67019 4.70768 4.81883 4.89944 4.91663 4.97805 4.98882 5.04690 5.10086 5.18548 5.21319 5.22675 5.24172 5.37353 5.39273 5.48635 5.56703 5.58696 5.63554 5.80465 5.88616 6.25831 6.60009 6.90661 7.33747 8.81644 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.012069 C = 0.009986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.597163 B = 2319.390247 C = 2803.226688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.081 4.081 3 H 0.092 0.908 4 C 0.068 3.932 5 H 0.064 0.936 6 C -0.142 4.142 7 C -0.138 4.138 8 C 0.177 3.823 9 H 0.026 0.974 10 C -0.531 4.531 11 H 0.032 0.968 12 C 0.028 3.972 13 N -0.943 5.943 14 Si 0.923 3.077 15 H -0.285 1.285 16 H -0.298 1.298 17 H -0.190 1.190 18 O -0.380 6.380 19 C -0.060 4.060 20 C -0.144 4.144 21 C -0.139 4.139 22 C -0.135 4.135 23 H 0.044 0.956 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.264 0.736 31 H 0.052 0.948 32 H 0.039 0.961 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.490 15.915 9.402 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.100 4.100 3 H 0.110 0.890 4 C 0.010 3.990 5 H 0.082 0.918 6 C -0.179 4.179 7 C -0.175 4.175 8 C 0.121 3.879 9 H 0.043 0.957 10 C -0.568 4.568 11 H 0.051 0.949 12 C -0.171 4.171 13 N -0.583 5.583 14 Si 0.747 3.253 15 H -0.212 1.212 16 H -0.225 1.225 17 H -0.112 1.112 18 O -0.301 6.301 19 C -0.060 4.060 20 C -0.201 4.201 21 C -0.196 4.196 22 C -0.192 4.192 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.510 15.606 9.581 18.375 hybrid contribution -0.378 -0.939 -0.102 1.017 sum 1.132 14.667 9.478 17.500 Atomic orbital electron populations 1.22009 0.95566 1.01717 1.01680 1.21473 0.96075 0.98876 0.93567 0.89023 1.22874 0.97019 0.84430 0.94681 0.91814 1.23177 1.02579 0.97486 0.94643 1.23064 1.00496 0.95637 0.98350 1.20647 0.91025 0.93133 0.83128 0.95657 1.21419 1.39537 0.91995 1.03888 0.94937 1.25925 0.96275 0.94351 1.00504 1.70114 1.46254 0.99257 1.42686 0.86185 0.77628 0.81905 0.79551 1.21199 1.22505 1.11197 1.88721 1.66756 1.30695 1.43898 1.20463 0.95486 0.94795 0.95217 1.22184 1.01159 0.96824 0.99930 1.21894 0.94640 1.01926 1.01188 1.21873 1.01105 1.00189 0.96067 0.93681 0.92537 0.91359 0.89372 0.89348 0.93057 0.90629 0.92711 0.92914 0.94188 0.93134 0.91313 0.92827 0.93859 0.92652 0.92808 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 8.05 71.98 0.58 -3.62 16 2 C -0.08 -2.18 1.71 -10.80 -0.02 -2.20 16 3 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 4 C 0.07 2.24 2.88 31.06 0.09 2.33 16 5 H 0.06 2.12 6.18 -2.39 -0.01 2.10 16 6 C -0.14 -4.18 6.36 31.85 0.20 -3.98 16 7 C -0.14 -5.28 6.53 32.05 0.21 -5.07 16 8 C 0.18 8.22 2.53 30.51 0.08 8.30 16 9 H 0.03 1.19 7.15 -2.39 -0.02 1.17 16 10 C -0.53 -31.23 9.32 25.60 0.24 -30.99 16 11 H 0.03 2.11 8.00 -2.91 -0.02 2.08 16 12 C 0.03 1.71 5.47 84.66 0.46 2.18 16 13 N -0.94 -60.96 13.96 21.45 0.30 -60.66 16 14 Si 0.92 45.45 27.01 68.60 1.85 47.31 16 15 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 16 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 17 H -0.19 -8.40 2.49 99.48 0.25 -8.15 16 18 O -0.38 -16.47 4.66 -148.98 -0.69 -17.17 16 19 C -0.06 -1.60 0.57 -52.18 -0.03 -1.63 16 20 C -0.14 -4.90 6.76 71.98 0.49 -4.42 16 21 C -0.14 -3.47 8.09 71.98 0.58 -2.89 16 22 C -0.14 -2.88 8.14 71.98 0.59 -2.30 16 23 H 0.04 1.52 4.51 -2.39 -0.01 1.50 16 24 H 0.06 1.46 6.30 -2.38 -0.02 1.44 16 25 H 0.07 1.56 6.46 -2.39 -0.02 1.55 16 26 H 0.09 2.29 6.01 -2.39 -0.01 2.27 16 27 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.05 2.11 8.03 -2.39 -0.02 2.09 16 29 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 31 H 0.05 2.16 5.87 -2.39 -0.01 2.15 16 32 H 0.04 1.24 8.13 -2.38 -0.02 1.22 16 33 H 0.05 1.80 4.35 -2.39 -0.01 1.79 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.04 1.24 6.31 -2.38 -0.02 1.23 16 37 H 0.05 1.18 6.46 -2.38 -0.02 1.16 16 38 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -67.00 277.79 5.47 -61.53 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.55 Total: 13.28 kcal Atomic # 6 Polarization: -47.75 SS G_CDS: 3.47 Total: -44.28 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.30 Total: -60.66 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.69 Total: -17.17 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.85 Total: 47.31 kcal Total: -67.00 5.47 -61.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306788809.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.593 kcal (2) G-P(sol) polarization free energy of solvation -67.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds