Wall clock time and date at job start Mon Mar 30 2020 03:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.53326 * 2 1 4 4 C 1.53036 * 109.50614 * 120.10167 * 2 1 3 5 5 N 1.46846 * 109.52384 * 179.12259 * 4 2 1 6 6 C 1.46903 * 110.99717 * 174.15896 * 5 4 2 7 7 C 1.53006 * 109.46632 * 190.00023 * 6 5 4 8 8 C 1.50707 * 109.46465 * 180.02562 * 7 6 5 9 9 H 1.07995 * 120.00287 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99281 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00714 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99673 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.47437 * 89.99847 * 12 10 8 14 14 H 1.48501 * 109.47134 * 209.99980 * 12 10 8 15 15 H 1.48501 * 109.47052 * 329.99810 * 12 10 8 16 16 C 1.46842 * 111.19700 * 298.25435 * 5 4 2 17 17 C 1.53041 * 109.52407 * 61.74724 * 16 5 4 18 18 C 1.53123 * 109.50348 * 239.90602 * 2 1 3 19 19 H 1.09000 * 109.52181 * 302.30675 * 18 2 1 20 20 N 1.46898 * 109.52252 * 62.49853 * 18 2 1 21 21 H 1.08999 * 109.47150 * 299.89776 * 1 2 3 22 22 H 1.09001 * 109.47166 * 59.90364 * 1 2 3 23 23 H 1.08995 * 109.46878 * 179.89845 * 1 2 3 24 24 H 1.09001 * 109.47001 * 180.09832 * 3 2 1 25 25 H 1.09001 * 109.47537 * 300.09991 * 3 2 1 26 26 H 1.09001 * 109.47095 * 60.10055 * 3 2 1 27 27 H 1.08999 * 109.46075 * 299.13575 * 4 2 1 28 28 H 1.08994 * 109.46383 * 59.11304 * 4 2 1 29 29 H 1.08996 * 109.47208 * 309.99780 * 6 5 4 30 30 H 1.08994 * 109.47072 * 70.00301 * 6 5 4 31 31 H 1.09005 * 109.47148 * 299.99641 * 7 6 5 32 32 H 1.08994 * 109.47164 * 60.00335 * 7 6 5 33 33 H 0.96996 * 120.00561 * 180.02562 * 11 10 8 34 34 H 1.09006 * 109.46447 * 181.75636 * 16 5 4 35 35 H 1.08991 * 109.46739 * 301.74021 * 16 5 4 36 36 H 1.08997 * 109.50282 * 60.75542 * 17 16 5 37 37 H 1.08999 * 109.50511 * 180.87834 * 17 16 5 38 38 H 1.00906 * 111.00015 * 180.02562 * 20 18 2 39 39 H 1.00903 * 111.00234 * 303.95030 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4420 0.0000 4 6 2.0410 -0.7235 1.2480 5 7 3.5093 -0.7421 1.2378 6 6 4.0373 -1.3059 2.4874 7 6 5.5497 -1.0827 2.5485 8 6 6.0914 -1.6616 3.8301 9 1 5.4238 -2.1404 4.5310 10 6 7.4395 -1.5800 4.1077 11 7 8.2527 -0.9974 3.2539 12 14 8.1112 -2.2982 5.6959 13 1 8.4957 -3.7155 5.4747 14 1 9.3031 -1.5231 6.1246 15 1 7.0687 -2.2271 6.7511 16 6 4.0230 -1.4729 0.0723 17 6 3.5712 -0.7718 -1.2108 18 6 2.0412 -0.7237 -1.2488 19 1 1.6453 -1.7391 -1.2691 20 7 1.6025 -0.0002 -2.4496 21 1 -0.3633 0.5122 0.8909 22 1 -0.3633 0.5153 -0.8891 23 1 -0.3633 -1.0276 -0.0018 24 1 3.1316 1.4408 -0.0018 25 1 1.6774 1.9568 -0.8891 26 1 1.6803 1.9557 0.8909 27 1 1.6906 -0.2023 2.1389 28 1 1.6650 -1.7465 1.2542 29 1 3.5629 -0.8144 3.3367 30 1 3.8261 -2.3746 2.5215 31 1 6.0242 -1.5742 1.6991 32 1 5.7610 -0.0139 2.5143 33 1 9.2011 -0.9403 3.4490 34 1 5.1121 -1.4961 0.1093 35 1 3.6374 -2.4923 0.0840 36 1 3.9678 0.2433 -1.2298 37 1 3.9396 -1.3232 -2.0759 38 1 1.9276 -0.4593 -3.2874 39 1 0.5990 0.1053 -2.4618 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307036692.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:21 Heat of formation + Delta-G solvation = -15.608013 kcal Electronic energy + Delta-G solvation = -16522.978376 eV Core-core repulsion = 14078.451017 eV Total energy + Delta-G solvation = -2444.527359 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.63548 -35.67560 -33.01646 -32.77839 -30.63797 -28.77101 -27.00777 -25.96378 -24.40201 -22.31219 -21.83260 -19.72361 -18.02477 -16.48280 -15.91158 -15.27833 -14.94481 -14.56498 -14.40558 -14.10519 -13.53578 -12.97461 -12.90305 -12.68466 -12.16877 -11.89949 -11.78019 -11.56246 -11.22345 -10.99397 -10.93436 -10.77919 -10.66204 -10.49202 -10.14251 -10.04204 -9.72139 -9.26328 -9.08005 -8.64796 -8.29959 -7.61758 -5.96847 -3.99108 3.33533 3.39794 3.43154 4.38338 4.49406 4.59176 4.78549 4.94706 5.12308 5.38864 5.42326 5.53790 5.56102 5.64936 5.78432 5.84120 5.90296 5.98756 6.03563 6.07671 6.23923 6.28015 6.41215 6.44706 6.49206 6.57452 6.61869 6.87227 7.01638 7.17769 7.41799 7.57872 7.65389 7.85168 7.94816 8.12802 8.47068 9.08282 9.64346 11.14519 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.052447 B = 0.005626 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.743700 B = 4976.038753 C = 5196.830825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C -0.122 4.122 4 C 0.065 3.935 5 N -0.533 5.533 6 C 0.064 3.936 7 C 0.028 3.972 8 C -0.522 4.522 9 H 0.053 0.947 10 C 0.058 3.942 11 N -0.893 5.893 12 Si 0.891 3.109 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.056 3.944 17 C -0.110 4.110 18 C 0.102 3.898 19 H 0.026 0.974 20 N -0.842 5.842 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.021 0.979 29 H 0.060 0.940 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.025 0.975 33 H 0.260 0.740 34 H 0.089 0.911 35 H 0.021 0.979 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.336 0.664 39 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.060 0.820 -9.360 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.055 4.055 3 C -0.179 4.179 4 C -0.064 4.064 5 N -0.257 5.257 6 C -0.063 4.063 7 C -0.009 4.009 8 C -0.560 4.560 9 H 0.071 0.929 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.719 3.281 13 H -0.208 1.208 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.073 4.073 17 C -0.148 4.148 18 C -0.010 4.010 19 H 0.044 0.956 20 N -0.373 5.373 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.039 0.961 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.148 0.852 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.278 1.954 -9.127 16.230 hybrid contribution -0.383 -2.243 0.731 2.390 sum -13.661 -0.289 -8.396 16.038 Atomic orbital electron populations 1.21884 0.95357 1.01036 1.01865 1.20574 0.94020 0.97288 0.93644 1.21638 1.02665 0.93401 1.00175 1.22108 0.89241 0.97653 0.97369 1.61979 1.05846 1.54558 1.03337 1.22315 0.99744 0.95415 0.88833 1.19098 0.87444 0.97815 0.96543 1.21205 0.92846 1.37273 1.04722 0.92869 1.24985 0.97121 0.95411 0.96753 1.69971 1.03852 1.43726 1.35699 0.86611 0.78571 0.79021 0.83881 1.20752 1.21200 1.19912 1.22087 1.01534 0.93883 0.89781 1.21661 0.93859 1.02504 0.96787 1.21376 0.95930 0.93677 0.89980 0.95646 1.58768 1.17379 1.56957 1.04147 0.92393 0.92455 0.93405 0.91045 0.92677 0.94004 0.91016 0.96049 0.92173 0.96463 0.96513 0.95663 0.93022 0.89312 0.96063 0.89889 0.92446 0.85156 0.85068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.20 37.16 0.30 -1.22 16 2 C -0.05 -0.71 0.59 -154.43 -0.09 -0.80 16 3 C -0.12 -1.70 7.85 37.16 0.29 -1.40 16 4 C 0.07 1.01 4.18 -3.83 -0.02 1.00 16 5 N -0.53 -9.86 3.94 -234.68 -0.92 -10.79 16 6 C 0.06 1.37 4.90 -3.82 -0.02 1.36 16 7 C 0.03 0.75 4.90 -27.88 -0.14 0.61 16 8 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 9 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -27.11 13.29 55.43 0.74 -26.38 16 12 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 16 C 0.06 0.97 5.29 -3.83 -0.02 0.95 16 17 C -0.11 -1.59 5.32 -26.65 -0.14 -1.73 16 18 C 0.10 1.28 2.50 -67.59 -0.17 1.11 16 19 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 20 N -0.84 -8.77 8.39 -4.56 -0.04 -8.81 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.54 6.64 -51.93 -0.34 0.19 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 1.16 6.01 -51.93 -0.31 0.85 16 25 H 0.05 0.72 7.55 -51.93 -0.39 0.33 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 1.10 8.02 -51.93 -0.42 0.69 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 1.29 7.99 -51.93 -0.41 0.87 16 30 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 31 H 0.02 0.46 6.43 -51.93 -0.33 0.13 16 32 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.09 1.74 6.21 -51.93 -0.32 1.41 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 1.31 6.58 -51.93 -0.34 0.97 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.34 3.03 9.04 -39.29 -0.36 2.67 16 39 H 0.34 3.01 7.15 -39.29 -0.28 2.73 16 LS Contribution 295.70 15.07 4.46 4.46 Total: -1.00 -29.81 295.70 -8.06 -37.87 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.86 Total: 0.62 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -0.41 Total: -13.80 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -0.23 Total: -45.97 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.81 -8.06 -37.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307036692.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.264 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds